Wall clock time and date at job start Wed Apr 1 2020 00:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91134 * 2 1 4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3 5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1 6 6 C 1.34783 * 125.64363 * 204.09303 * 5 4 2 7 7 O 1.21543 * 120.00106 * 0.02562 * 6 5 4 8 8 C 1.47927 * 119.99614 * 180.02562 * 6 5 4 9 9 C 1.38253 * 119.24099 * 180.02562 * 8 6 5 10 10 C 1.40695 * 118.65526 * 179.97438 * 9 8 6 11 11 C 1.40236 * 122.06038 * 180.02562 * 10 9 8 12 12 C 1.36309 * 119.48173 * 179.97438 * 11 10 9 13 13 C 1.39248 * 120.94534 * 359.97438 * 12 11 10 14 14 C 1.36368 * 121.05961 * 359.97438 * 13 12 11 15 15 C 1.40042 * 119.58664 * 0.02562 * 14 13 12 16 16 C 1.41351 * 121.85236 * 180.02562 * 15 14 13 17 17 O 1.35493 * 119.95048 * 0.02562 * 16 15 14 18 18 N 1.31383 * 120.09453 * 179.72193 * 16 15 14 19 19 C 1.47017 * 108.70563 * 24.12485 * 5 4 2 20 20 C 1.54324 * 107.27321 * 358.94388 * 19 5 4 21 21 H 1.08995 * 110.72617 * 96.34448 * 20 19 5 22 22 N 1.46499 * 110.72129 * 219.44397 * 20 19 5 23 23 C 1.36931 * 120.00122 * 273.54344 * 22 20 19 24 24 H 1.08002 * 120.00098 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00429 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99535 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 180.27849 * 25 23 22 28 28 H 1.48501 * 109.46922 * 269.71949 * 27 25 23 29 29 H 1.48496 * 109.47354 * 29.72145 * 27 25 23 30 30 H 1.48501 * 109.47428 * 149.72253 * 27 25 23 31 31 H 1.09000 * 109.47369 * 296.10135 * 1 2 3 32 32 H 1.08999 * 109.47009 * 56.10715 * 1 2 3 33 33 H 1.09002 * 109.46507 * 176.10181 * 1 2 3 34 34 H 1.09001 * 110.36963 * 86.07513 * 4 2 1 35 35 H 1.09000 * 110.45879 * 323.79471 * 4 2 1 36 36 H 1.08007 * 120.67557 * 359.97438 * 9 8 6 37 37 H 1.08000 * 120.25568 * 359.97438 * 11 10 9 38 38 H 1.08004 * 119.53064 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.47416 * 180.02562 * 13 12 11 40 40 H 1.07993 * 120.20315 * 180.02562 * 14 13 12 41 41 H 0.96699 * 114.00681 * 89.99843 * 17 16 15 42 42 H 1.09000 * 109.88283 * 239.52716 * 19 5 4 43 43 H 1.09004 * 110.01221 * 118.43143 * 19 5 4 44 44 H 0.97001 * 119.99790 * 93.53861 * 22 20 19 45 45 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4478 -1.5615 -1.5938 7 8 4.3007 -1.4997 -2.7987 8 6 5.7469 -1.9863 -1.0280 9 6 6.7833 -2.3089 -1.8842 10 6 8.0137 -2.7109 -1.3328 11 6 9.1122 -3.0535 -2.1344 12 6 10.2801 -3.4354 -1.5443 13 6 10.3976 -3.4893 -0.1579 14 6 9.3493 -3.1617 0.6504 15 6 8.1337 -2.7648 0.0794 16 6 7.0167 -2.4144 0.8715 17 8 7.1056 -2.4571 2.2229 18 7 5.8942 -2.0417 0.2994 19 6 3.4675 -1.2739 0.6962 20 6 2.0862 -0.8078 1.2024 21 1 1.4479 -1.6630 1.4241 22 7 2.2286 0.0498 2.3816 23 6 2.3033 -0.5088 3.6295 24 1 2.2576 -1.5817 3.7445 25 6 2.4377 0.3038 4.7469 26 7 2.4938 1.6113 4.6067 27 14 2.5474 -0.4588 6.4485 28 1 1.1836 -0.5885 7.0217 29 1 3.1726 -1.8021 6.3497 30 1 3.3732 0.4080 7.3272 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8530 33 1 -0.3632 -1.0253 -0.0699 34 1 2.1560 -0.1721 -2.0837 35 1 1.4526 -1.6705 -1.4041 36 1 6.6512 -2.2535 -2.9548 37 1 9.0334 -3.0152 -3.2109 38 1 11.1265 -3.6998 -2.1609 39 1 11.3343 -3.7948 0.2845 40 1 9.4559 -3.2081 1.7240 41 1 7.4015 -1.6286 2.6241 42 1 4.2426 -0.5994 1.0601 43 1 3.6663 -2.2881 1.0427 44 1 2.2700 1.0134 2.2783 45 1 2.5881 2.1792 5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054734731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:57 Heat of formation + Delta-G solvation = -17.163624 kcal Electronic energy + Delta-G solvation = -29471.486021 eV Core-core repulsion = 25453.829406 eV Total energy + Delta-G solvation = -4017.656615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.24680 -40.99145 -39.08290 -38.92121 -37.60333 -35.87257 -34.03230 -33.30764 -32.55208 -32.14348 -30.65082 -29.11826 -27.79408 -25.95433 -25.19958 -25.06400 -23.19020 -23.01340 -21.43196 -21.28280 -19.57051 -19.12237 -19.00370 -18.66318 -17.57639 -17.31678 -17.08763 -16.61640 -16.47583 -16.15407 -15.71473 -15.34457 -15.24783 -14.98307 -14.68114 -14.66570 -14.43231 -14.27194 -14.01489 -13.76062 -13.45267 -13.03807 -13.00790 -12.90438 -12.83091 -12.81432 -12.76163 -12.25219 -12.17560 -12.14173 -12.02726 -11.67935 -11.56682 -11.34126 -11.16442 -10.98796 -10.38859 -10.20169 -9.73851 -9.07929 -9.01739 -7.91892 -5.21115 -0.93207 -0.39454 0.74510 1.27486 1.50150 1.50350 1.59470 1.84671 2.18819 2.41231 2.58439 2.92256 3.15264 3.39390 3.49559 3.56883 3.66886 3.79169 3.81858 3.91913 3.97374 4.20077 4.23807 4.24795 4.37056 4.40397 4.47691 4.58357 4.62145 4.65587 4.66920 4.88047 4.92259 4.99274 5.00915 5.14472 5.20014 5.23882 5.33350 5.35403 5.36658 5.43015 5.50007 5.57128 5.82345 6.28138 6.36529 6.45184 6.65299 6.99786 7.36272 8.06794 8.32642 9.31018 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010227 B = 0.003753 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.249763 B = 7458.731375 C = 9931.419825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 H 0.072 0.928 4 C 0.114 3.886 5 N -0.597 5.597 6 C 0.576 3.424 7 O -0.569 6.569 8 C 0.049 3.951 9 C -0.085 4.085 10 C -0.041 4.041 11 C -0.108 4.108 12 C -0.088 4.088 13 C -0.101 4.101 14 C -0.096 4.096 15 C -0.116 4.116 16 C 0.343 3.657 17 O -0.481 6.481 18 N -0.505 5.505 19 C 0.120 3.880 20 C 0.166 3.834 21 H 0.064 0.936 22 N -0.719 5.719 23 C -0.236 4.236 24 H 0.073 0.927 25 C -0.067 4.067 26 N -0.967 5.967 27 Si 0.968 3.032 28 H -0.288 1.288 29 H -0.272 1.272 30 H -0.296 1.296 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.421 0.579 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.375 0.625 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.612 -10.017 -13.844 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.090 0.910 4 C -0.008 4.008 5 N -0.327 5.327 6 C 0.365 3.635 7 O -0.450 6.450 8 C -0.075 4.075 9 C -0.107 4.107 10 C -0.046 4.046 11 C -0.126 4.126 12 C -0.107 4.107 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.119 4.119 16 C 0.148 3.852 17 O -0.291 6.291 18 N -0.227 5.227 19 C -0.006 4.006 20 C 0.055 3.945 21 H 0.082 0.918 22 N -0.357 5.357 23 C -0.368 4.368 24 H 0.091 0.909 25 C -0.260 4.260 26 N -0.617 5.617 27 Si 0.797 3.203 28 H -0.215 1.215 29 H -0.197 1.197 30 H -0.222 1.222 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.182 0.818 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.181 0.819 40 H 0.167 0.833 41 H 0.282 0.718 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.208 0.792 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.604 -10.432 -13.964 22.740 hybrid contribution 0.586 0.591 1.076 1.360 sum 15.189 -9.841 -12.889 22.219 Atomic orbital electron populations 1.21562 0.91919 1.02718 1.02164 1.22528 0.97776 0.98667 0.93254 0.90971 1.22436 0.81843 0.98878 0.97597 1.48414 1.12265 1.63688 1.08299 1.17815 0.83052 0.77506 0.85134 1.90713 1.83304 1.56751 1.14252 1.20378 0.95037 1.03857 0.88241 1.22307 0.91259 0.95245 1.01860 1.18285 0.94839 0.99051 0.92382 1.21349 0.91479 0.98681 1.01054 1.21523 0.98126 0.95683 0.95380 1.21496 0.99571 0.96946 0.93856 1.21218 0.90905 0.97546 1.01875 1.19257 0.95581 1.03549 0.93555 1.19513 0.87445 0.93201 0.85068 1.84672 1.89777 1.40770 1.13879 1.67155 1.27355 1.15565 1.12584 1.22821 1.00088 1.00636 0.77075 1.21537 0.92684 0.93627 0.86646 0.91815 1.42399 1.87106 1.05050 1.01185 1.19544 1.40538 0.92000 0.84722 0.90898 1.25445 1.03564 0.95758 1.01221 1.69815 1.59017 1.03425 1.29470 0.85223 0.77243 0.77483 0.80311 1.21532 1.19708 1.22245 0.93304 0.90595 0.91487 0.89958 0.89655 0.81842 0.82229 0.81479 0.81887 0.83263 0.71770 0.92579 0.92959 0.79229 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.31 71.98 0.67 -2.84 16 2 C -0.10 -3.38 3.25 -9.40 -0.03 -3.41 16 3 H 0.07 2.56 8.00 -2.38 -0.02 2.54 16 4 C 0.11 3.55 6.37 86.85 0.55 4.10 16 5 N -0.60 -21.71 3.33 -815.10 -2.71 -24.42 16 6 C 0.58 21.29 7.83 86.81 0.68 21.97 16 7 O -0.57 -22.05 16.52 -3.85 -0.06 -22.11 16 8 C 0.05 1.67 6.71 41.44 0.28 1.95 16 9 C -0.09 -2.31 9.40 22.87 0.22 -2.09 16 10 C -0.04 -0.93 5.74 -21.30 -0.12 -1.05 16 11 C -0.11 -1.56 9.81 22.31 0.22 -1.34 16 12 C -0.09 -0.88 9.95 22.06 0.22 -0.67 16 13 C -0.10 -1.11 9.95 22.08 0.22 -0.89 16 14 C -0.10 -1.61 9.58 22.27 0.21 -1.40 16 15 C -0.12 -2.77 5.76 -21.19 -0.12 -2.89 16 16 C 0.34 10.23 7.80 85.53 0.67 10.89 16 17 O -0.48 -13.18 12.83 -87.93 -1.13 -14.31 16 18 N -0.51 -17.81 6.73 -297.69 -2.00 -19.81 16 19 C 0.12 4.79 5.13 86.73 0.45 5.23 16 20 C 0.17 6.66 3.06 46.18 0.14 6.80 16 21 H 0.06 2.57 8.02 -2.39 -0.02 2.55 16 22 N -0.72 -35.73 5.18 -317.33 -1.64 -37.37 16 23 C -0.24 -12.92 9.98 84.03 0.84 -12.08 16 24 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 25 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 26 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 27 Si 0.97 45.77 29.55 68.60 2.03 47.79 16 28 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 29 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 30 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 34 H 0.08 2.44 8.04 -2.39 -0.02 2.42 16 35 H 0.09 2.37 7.99 -2.39 -0.02 2.35 16 36 H 0.16 3.89 7.59 -2.91 -0.02 3.87 16 37 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 38 H 0.17 0.48 8.06 -2.91 -0.02 0.45 16 39 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.15 2.10 7.65 -2.91 -0.02 2.07 16 41 H 0.42 8.12 9.06 -74.06 -0.67 7.45 16 42 H 0.06 2.54 7.26 -2.39 -0.02 2.52 16 43 H 0.05 2.20 7.52 -2.38 -0.02 2.19 16 44 H 0.38 20.10 7.71 -92.71 -0.72 19.38 16 45 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -74.15 377.17 -0.03 -74.18 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.34 Total: 34.96 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 5.55 Total: 18.95 kcal Atomic # 7 Polarization: -133.40 SS G_CDS: -6.07 Total: -139.47 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -1.19 Total: -36.41 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.15 -0.03 -74.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054734731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.020 kcal (2) G-P(sol) polarization free energy of solvation -74.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds