Wall clock time and date at job start Wed Apr 1 2020 00:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.63980 * 2 1 4 4 C 1.54324 * 110.71738 * 236.85755 * 2 1 3 5 5 N 1.47020 * 107.26910 * 219.44134 * 4 2 1 6 6 C 1.34782 * 125.64562 * 178.90327 * 5 4 2 7 7 O 1.21593 * 119.99932 * 174.74014 * 6 5 4 8 8 C 1.47584 * 120.00058 * 354.74477 * 6 5 4 9 9 C 1.39810 * 120.00513 * 7.74158 * 8 6 5 10 10 C 1.36578 * 120.00373 * 179.72110 * 9 8 6 11 11 C 1.39811 * 119.99823 * 0.57302 * 10 9 8 12 12 C 1.47584 * 119.99865 * 179.72111 * 11 10 9 13 13 C 1.35947 * 126.59964 * 359.69042 * 12 11 10 14 14 N 1.34026 * 107.49814 * 179.87887 * 13 12 11 15 15 C 1.30425 * 108.92759 * 0.39260 * 14 13 12 16 16 O 1.33942 * 109.06717 * 359.75800 * 15 14 13 17 17 C 1.39808 * 119.99953 * 359.70226 * 11 10 9 18 18 C 1.36580 * 120.00204 * 359.97438 * 17 11 10 19 19 C 1.47420 * 108.70525 * 358.94387 * 5 4 2 20 20 C 1.55122 * 104.94241 * 23.99981 * 19 5 4 21 21 H 1.09001 * 110.93409 * 81.21633 * 20 19 5 22 22 N 1.46502 * 111.16101 * 205.12975 * 20 19 5 23 23 C 1.36932 * 119.99944 * 267.16939 * 22 20 19 24 24 H 1.08001 * 120.00381 * 0.02562 * 23 22 20 25 25 C 1.38819 * 119.99670 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00020 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99677 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47713 * 59.99680 * 27 25 23 29 29 H 1.48511 * 109.46854 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47085 * 299.99000 * 27 25 23 31 31 H 1.08997 * 109.47570 * 179.30032 * 1 2 3 32 32 H 1.09000 * 109.46920 * 299.30290 * 1 2 3 33 33 H 1.09009 * 109.47287 * 59.29681 * 1 2 3 34 34 H 1.08995 * 109.88411 * 338.86109 * 4 2 1 35 35 H 1.09006 * 109.87976 * 99.87709 * 4 2 1 36 36 H 1.08010 * 119.99867 * 0.02562 * 9 8 6 37 37 H 1.07997 * 120.00428 * 180.32094 * 10 9 8 38 38 H 1.08000 * 126.24860 * 0.02562 * 13 12 11 39 39 H 1.07993 * 125.47218 * 179.73360 * 15 14 13 40 40 H 1.07998 * 119.99458 * 180.02562 * 17 11 10 41 41 H 1.07998 * 120.00215 * 180.02562 * 18 17 11 42 42 H 1.09004 * 110.36688 * 142.96279 * 19 5 4 43 43 H 1.08999 * 110.36567 * 265.28668 * 19 5 4 44 44 H 0.96999 * 119.99969 * 87.17227 * 22 20 19 45 45 H 0.97006 * 119.99777 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7892 -1.2086 5 7 3.2444 -1.5495 -0.7417 6 6 3.9914 -2.3822 -1.4935 7 8 4.9947 -2.8869 -1.0276 8 6 3.5915 -2.6813 -2.8823 9 6 2.5349 -1.9808 -3.4720 10 6 2.1686 -2.2537 -4.7591 11 6 2.8425 -3.2418 -5.4831 12 6 2.4426 -3.5409 -6.8719 13 6 1.4411 -2.9462 -7.5730 14 7 1.4139 -3.5060 -8.7904 15 6 2.3450 -4.4169 -8.8582 16 8 2.9978 -4.4630 -7.6895 17 6 3.8953 -3.9463 -4.8916 18 6 4.2659 -3.6689 -3.6067 19 6 3.4632 -1.2510 0.6853 20 6 2.0789 -0.7934 1.2151 21 1 1.4452 -1.6511 1.4402 22 7 2.2215 0.0737 2.3874 23 6 2.1868 -0.4652 3.6457 24 1 2.0547 -1.5294 3.7741 25 6 2.3214 0.3565 4.7565 26 7 2.4829 1.6533 4.6001 27 14 2.2747 -0.3787 6.4731 28 1 3.3762 -1.3637 6.6200 29 1 2.4399 0.7015 7.4788 30 1 0.9714 -1.0581 6.6854 31 1 -0.3634 -1.0275 -0.0125 32 1 -0.3633 0.5030 0.8962 33 1 -0.3634 0.5248 -0.8837 34 1 1.3129 -1.4731 -1.5800 35 1 2.3715 -0.0991 -1.9990 36 1 2.0115 -1.2204 -2.9112 37 1 1.3558 -1.7090 -5.2163 38 1 0.7883 -2.1638 -7.2151 39 1 2.5556 -5.0351 -9.7182 40 1 4.4160 -4.7093 -5.4511 41 1 5.0795 -4.2128 -3.1499 42 1 3.7959 -2.1447 1.2132 43 1 4.1931 -0.4492 0.7976 44 1 2.3405 1.0294 2.2721 45 1 2.5773 2.2274 5.3763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054801011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:30 Heat of formation + Delta-G solvation = 56.857489 kcal Electronic energy + Delta-G solvation = -28399.924461 eV Core-core repulsion = 24385.477643 eV Total energy + Delta-G solvation = -4014.446819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.71760 -40.64224 -38.86430 -37.55435 -35.23739 -34.39932 -33.05309 -32.41536 -31.65925 -30.71466 -29.35217 -27.61337 -26.62131 -24.84051 -23.82802 -23.64545 -22.32283 -21.99192 -21.18779 -20.18169 -19.82141 -18.40421 -17.51065 -17.17189 -17.01988 -16.54954 -16.21806 -15.82061 -15.17180 -14.70800 -14.60346 -14.46431 -14.12184 -13.98070 -13.78413 -13.64354 -13.31594 -13.16330 -13.04689 -12.93092 -12.68678 -12.42468 -11.85534 -11.83076 -11.70292 -11.44987 -11.11891 -11.04318 -10.99474 -10.74046 -10.59172 -10.32431 -10.24307 -10.00400 -9.83643 -9.76364 -9.45598 -9.04052 -8.57378 -8.38583 -7.12202 -5.87618 -3.18448 -0.01646 1.05477 1.34520 2.20425 2.24583 2.85467 3.05427 3.39724 3.44761 3.45306 3.63783 3.75990 4.14506 4.40925 4.42005 4.50703 4.53099 4.58060 4.70795 4.93923 4.97252 5.00203 5.13321 5.18227 5.34030 5.38968 5.41551 5.44656 5.58925 5.62635 5.73872 5.79345 5.81489 5.91921 5.94400 6.02898 6.03939 6.09978 6.18879 6.32326 6.38582 6.44583 6.52520 6.55844 6.82522 7.20715 7.61696 7.64185 8.22121 8.29854 9.41879 9.94162 10.29073 11.34055 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026597 B = 0.002055 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.501570 B =13619.910594 C =14352.131256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.087 0.913 4 C 0.095 3.905 5 N -0.604 5.604 6 C 0.563 3.437 7 O -0.539 6.539 8 C -0.112 4.112 9 C -0.121 4.121 10 C -0.101 4.101 11 C -0.002 4.002 12 C -0.002 4.002 13 C -0.019 4.019 14 N -0.486 5.486 15 C 0.173 3.827 16 O -0.198 6.198 17 C -0.108 4.108 18 C -0.059 4.059 19 C 0.080 3.920 20 C 0.178 3.822 21 H 0.069 0.931 22 N -0.707 5.707 23 C -0.250 4.250 24 H 0.072 0.928 25 C -0.007 4.007 26 N -0.929 5.929 27 Si 0.909 3.091 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.172 0.828 37 H 0.135 0.865 38 H 0.189 0.811 39 H 0.252 0.748 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 -8.552 -25.700 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 H 0.105 0.895 4 C -0.028 4.028 5 N -0.337 5.337 6 C 0.353 3.647 7 O -0.418 6.418 8 C -0.115 4.115 9 C -0.138 4.138 10 C -0.119 4.119 11 C -0.003 4.003 12 C -0.055 4.055 13 C -0.159 4.159 14 N -0.214 5.214 15 C -0.052 4.052 16 O -0.084 6.084 17 C -0.126 4.126 18 C -0.078 4.078 19 C -0.045 4.045 20 C 0.065 3.935 21 H 0.087 0.913 22 N -0.347 5.347 23 C -0.381 4.381 24 H 0.090 0.910 25 C -0.204 4.204 26 N -0.576 5.576 27 Si 0.739 3.261 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.188 0.812 37 H 0.153 0.847 38 H 0.205 0.795 39 H 0.268 0.732 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.222 0.778 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.625 -8.823 -25.761 27.356 hybrid contribution 0.598 -0.276 1.193 1.363 sum -2.027 -9.099 -24.568 26.277 Atomic orbital electron populations 1.21681 0.93735 1.01726 1.02142 1.22597 0.96593 1.00041 0.94536 0.89494 1.22623 0.87997 0.94570 0.97622 1.48381 1.29409 1.43241 1.12640 1.17875 0.82996 0.78936 0.84941 1.90791 1.25200 1.52485 1.73320 1.20192 0.97862 0.98830 0.94611 1.22567 0.95961 1.00011 0.95267 1.20787 0.99981 0.96882 0.94274 1.17852 0.97213 0.97664 0.87606 1.21513 0.97546 0.93842 0.92609 1.23396 0.99758 1.03077 0.89678 1.70357 1.20950 1.09309 1.20805 1.28193 0.89892 0.98718 0.88369 1.84486 1.52026 1.48607 1.23255 1.20957 0.96556 0.99820 0.95264 1.20990 0.98338 0.95293 0.93156 1.23552 1.02052 1.01191 0.77738 1.21411 0.91838 0.93619 0.86634 0.91279 1.42263 1.86085 1.06189 1.00125 1.19204 1.43068 0.92715 0.83070 0.90992 1.24766 1.02131 0.95447 0.98042 1.69646 1.55773 1.02676 1.29539 0.86252 0.77942 0.77813 0.84066 1.21102 1.21631 1.21131 0.92806 0.91157 0.93147 0.90444 0.90804 0.81167 0.84728 0.79451 0.73219 0.84906 0.84081 0.90873 0.91244 0.77832 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.14 37.16 0.34 -1.30 16 2 C -0.12 -1.62 3.19 -88.79 -0.28 -1.90 16 3 H 0.09 1.24 8.00 -51.93 -0.42 0.83 16 4 C 0.09 1.09 4.47 -3.06 -0.01 1.08 16 5 N -0.60 -9.15 3.33 -176.45 -0.59 -9.74 16 6 C 0.56 8.96 7.80 -12.45 -0.10 8.86 16 7 O -0.54 -10.52 16.66 5.28 0.09 -10.43 16 8 C -0.11 -1.38 5.88 -104.91 -0.62 -2.00 16 9 C -0.12 -1.16 8.53 -39.59 -0.34 -1.49 16 10 C -0.10 -0.83 9.51 -39.59 -0.38 -1.20 16 11 C 0.00 -0.02 5.88 -104.91 -0.62 -0.64 16 12 C 0.00 -0.02 7.06 -36.59 -0.26 -0.28 16 13 C -0.02 -0.16 11.29 -17.42 -0.20 -0.36 16 14 N -0.49 -4.40 11.27 -14.66 -0.17 -4.56 16 15 C 0.17 1.13 13.21 52.17 0.69 1.82 16 16 O -0.20 -1.67 10.57 4.24 0.04 -1.63 16 17 C -0.11 -1.04 9.67 -39.59 -0.38 -1.42 16 18 C -0.06 -0.67 9.53 -39.59 -0.38 -1.04 16 19 C 0.08 1.44 6.59 -2.42 -0.02 1.43 16 20 C 0.18 3.22 3.17 -65.67 -0.21 3.01 16 21 H 0.07 1.28 8.00 -51.93 -0.42 0.87 16 22 N -0.71 -16.33 5.25 -51.24 -0.27 -16.60 16 23 C -0.25 -6.56 9.96 -15.06 -0.15 -6.71 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -26.85 13.06 55.49 0.72 -26.12 16 27 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 31 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.08 0.74 6.31 -51.93 -0.33 0.42 16 35 H 0.07 0.70 6.81 -51.93 -0.35 0.34 16 36 H 0.17 1.39 2.74 -58.76 -0.16 1.23 16 37 H 0.13 0.71 7.02 -52.49 -0.37 0.34 16 38 H 0.19 1.09 7.29 -52.49 -0.38 0.71 16 39 H 0.25 0.35 8.06 -52.49 -0.42 -0.07 16 40 H 0.13 1.08 7.93 -52.49 -0.42 0.66 16 41 H 0.14 1.60 7.66 -52.49 -0.40 1.20 16 42 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.39 9.49 7.76 -40.82 -0.32 9.17 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -33.42 375.73 -8.16 -41.58 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.64 Total: 7.56 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.00 Total: -2.44 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.30 Total: -57.02 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.13 Total: -12.06 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.42 -8.16 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054801011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.440 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds