Wall clock time and date at job start Wed Apr 1 2020 00:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.63980 * 2 1 4 4 C 1.54324 * 110.71738 * 236.85755 * 2 1 3 5 5 N 1.47020 * 107.26910 * 219.44134 * 4 2 1 6 6 C 1.34782 * 125.64562 * 178.90327 * 5 4 2 7 7 O 1.21593 * 119.99932 * 174.74014 * 6 5 4 8 8 C 1.47584 * 120.00058 * 354.74477 * 6 5 4 9 9 C 1.39810 * 120.00513 * 7.74158 * 8 6 5 10 10 C 1.36578 * 120.00373 * 179.72110 * 9 8 6 11 11 C 1.39811 * 119.99823 * 0.57302 * 10 9 8 12 12 C 1.47584 * 119.99865 * 179.72111 * 11 10 9 13 13 C 1.35947 * 126.59964 * 359.69042 * 12 11 10 14 14 N 1.34026 * 107.49814 * 179.87887 * 13 12 11 15 15 C 1.30425 * 108.92759 * 0.39260 * 14 13 12 16 16 O 1.33942 * 109.06717 * 359.75800 * 15 14 13 17 17 C 1.39808 * 119.99953 * 359.70226 * 11 10 9 18 18 C 1.36580 * 120.00204 * 359.97438 * 17 11 10 19 19 C 1.47420 * 108.70525 * 358.94387 * 5 4 2 20 20 C 1.55122 * 104.94241 * 23.99981 * 19 5 4 21 21 H 1.09001 * 110.93409 * 81.21633 * 20 19 5 22 22 N 1.46502 * 111.16101 * 205.12975 * 20 19 5 23 23 C 1.36932 * 119.99944 * 267.16939 * 22 20 19 24 24 H 1.08001 * 120.00381 * 0.02562 * 23 22 20 25 25 C 1.38819 * 119.99670 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00020 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99677 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47713 * 59.99680 * 27 25 23 29 29 H 1.48511 * 109.46854 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47085 * 299.99000 * 27 25 23 31 31 H 1.08997 * 109.47570 * 179.30032 * 1 2 3 32 32 H 1.09000 * 109.46920 * 299.30290 * 1 2 3 33 33 H 1.09009 * 109.47287 * 59.29681 * 1 2 3 34 34 H 1.08995 * 109.88411 * 338.86109 * 4 2 1 35 35 H 1.09006 * 109.87976 * 99.87709 * 4 2 1 36 36 H 1.08010 * 119.99867 * 0.02562 * 9 8 6 37 37 H 1.07997 * 120.00428 * 180.32094 * 10 9 8 38 38 H 1.08000 * 126.24860 * 0.02562 * 13 12 11 39 39 H 1.07993 * 125.47218 * 179.73360 * 15 14 13 40 40 H 1.07998 * 119.99458 * 180.02562 * 17 11 10 41 41 H 1.07998 * 120.00215 * 180.02562 * 18 17 11 42 42 H 1.09004 * 110.36688 * 142.96279 * 19 5 4 43 43 H 1.08999 * 110.36567 * 265.28668 * 19 5 4 44 44 H 0.96999 * 119.99969 * 87.17227 * 22 20 19 45 45 H 0.97006 * 119.99777 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7892 -1.2086 5 7 3.2444 -1.5495 -0.7417 6 6 3.9914 -2.3822 -1.4935 7 8 4.9947 -2.8869 -1.0276 8 6 3.5915 -2.6813 -2.8823 9 6 2.5349 -1.9808 -3.4720 10 6 2.1686 -2.2537 -4.7591 11 6 2.8425 -3.2418 -5.4831 12 6 2.4426 -3.5409 -6.8719 13 6 1.4411 -2.9462 -7.5730 14 7 1.4139 -3.5060 -8.7904 15 6 2.3450 -4.4169 -8.8582 16 8 2.9978 -4.4630 -7.6895 17 6 3.8953 -3.9463 -4.8916 18 6 4.2659 -3.6689 -3.6067 19 6 3.4632 -1.2510 0.6853 20 6 2.0789 -0.7934 1.2151 21 1 1.4452 -1.6511 1.4402 22 7 2.2215 0.0737 2.3874 23 6 2.1868 -0.4652 3.6457 24 1 2.0547 -1.5294 3.7741 25 6 2.3214 0.3565 4.7565 26 7 2.4829 1.6533 4.6001 27 14 2.2747 -0.3787 6.4731 28 1 3.3762 -1.3637 6.6200 29 1 2.4399 0.7015 7.4788 30 1 0.9714 -1.0581 6.6854 31 1 -0.3634 -1.0275 -0.0125 32 1 -0.3633 0.5030 0.8962 33 1 -0.3634 0.5248 -0.8837 34 1 1.3129 -1.4731 -1.5800 35 1 2.3715 -0.0991 -1.9990 36 1 2.0115 -1.2204 -2.9112 37 1 1.3558 -1.7090 -5.2163 38 1 0.7883 -2.1638 -7.2151 39 1 2.5556 -5.0351 -9.7182 40 1 4.4160 -4.7093 -5.4511 41 1 5.0795 -4.2128 -3.1499 42 1 3.7959 -2.1447 1.2132 43 1 4.1931 -0.4492 0.7976 44 1 2.3405 1.0294 2.2721 45 1 2.5773 2.2274 5.3763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054801011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:29 Heat of formation + Delta-G solvation = 33.186319 kcal Electronic energy + Delta-G solvation = -28400.950920 eV Core-core repulsion = 24385.477643 eV Total energy + Delta-G solvation = -4015.473278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.27644 -41.72161 -39.83416 -38.83308 -36.07720 -35.81345 -34.18149 -33.51228 -32.64330 -32.19586 -30.22171 -28.95964 -27.62868 -26.17210 -25.10281 -24.39078 -23.29583 -22.77965 -22.13506 -21.39160 -20.99279 -19.29469 -18.93425 -18.40974 -17.61428 -17.58383 -17.18310 -16.93561 -16.42433 -15.97471 -15.68375 -15.40605 -15.23918 -15.05239 -14.82028 -14.64790 -14.43277 -14.40772 -14.16496 -14.03778 -13.77427 -13.53502 -13.05390 -12.91028 -12.85257 -12.78629 -12.44551 -12.34651 -12.25193 -12.05801 -11.89307 -11.65756 -11.59704 -11.28994 -11.08841 -10.97742 -10.90895 -10.18773 -9.76892 -9.15348 -9.05733 -7.97087 -5.26380 -0.75331 0.33596 0.66967 1.47430 1.49672 1.55303 1.61172 1.69241 1.83931 1.91379 2.55070 2.78874 3.29008 3.35568 3.41357 3.49111 3.56636 3.77047 3.87120 3.89241 4.01494 4.05324 4.17022 4.23078 4.28307 4.32283 4.43443 4.52866 4.57874 4.63127 4.74041 4.77861 4.88660 4.91473 4.95785 5.05180 5.14571 5.19443 5.20211 5.31171 5.33063 5.35699 5.38224 5.51482 5.56010 5.70486 6.24358 6.45318 6.66710 6.99884 7.32097 8.03654 8.27764 9.25067 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026597 B = 0.002055 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.501570 B =13619.910594 C =14352.131256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 H 0.082 0.918 4 C 0.094 3.906 5 N -0.604 5.604 6 C 0.559 3.441 7 O -0.591 6.591 8 C -0.136 4.136 9 C -0.109 4.109 10 C -0.093 4.093 11 C 0.005 3.995 12 C -0.028 4.028 13 C -0.013 4.013 14 N -0.523 5.523 15 C 0.191 3.809 16 O -0.209 6.209 17 C -0.112 4.112 18 C -0.068 4.068 19 C 0.089 3.911 20 C 0.172 3.828 21 H 0.065 0.935 22 N -0.718 5.718 23 C -0.247 4.247 24 H 0.073 0.927 25 C -0.067 4.067 26 N -0.963 5.963 27 Si 0.968 3.032 28 H -0.284 1.284 29 H -0.295 1.295 30 H -0.275 1.275 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.189 0.811 37 H 0.173 0.827 38 H 0.211 0.789 39 H 0.294 0.706 40 H 0.143 0.857 41 H 0.128 0.872 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.378 0.622 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 -8.965 -29.114 30.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.127 4.127 3 H 0.100 0.900 4 C -0.027 4.027 5 N -0.335 5.335 6 C 0.350 3.650 7 O -0.473 6.473 8 C -0.139 4.139 9 C -0.126 4.126 10 C -0.111 4.111 11 C 0.004 3.996 12 C -0.081 4.081 13 C -0.152 4.152 14 N -0.251 5.251 15 C -0.033 4.033 16 O -0.096 6.096 17 C -0.130 4.130 18 C -0.087 4.087 19 C -0.037 4.037 20 C 0.061 3.939 21 H 0.083 0.917 22 N -0.356 5.356 23 C -0.378 4.378 24 H 0.091 0.909 25 C -0.260 4.260 26 N -0.613 5.613 27 Si 0.797 3.203 28 H -0.210 1.210 29 H -0.221 1.221 30 H -0.201 1.201 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.205 0.795 37 H 0.190 0.810 38 H 0.228 0.772 39 H 0.309 0.691 40 H 0.161 0.839 41 H 0.146 0.854 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.211 0.789 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.844 -9.260 -29.224 31.037 hybrid contribution 1.272 -0.253 2.009 2.391 sum -3.571 -9.513 -27.215 29.051 Atomic orbital electron populations 1.21653 0.91916 1.02605 1.02560 1.22512 0.97988 0.99311 0.92843 0.89968 1.22950 0.87287 0.95216 0.97208 1.48373 1.30452 1.43565 1.11133 1.18516 0.82193 0.78000 0.86244 1.90752 1.27499 1.54400 1.74671 1.19952 1.00242 1.00987 0.92702 1.22671 0.94637 0.99465 0.95817 1.21148 1.00278 0.96246 0.93410 1.18052 0.96417 0.97159 0.87952 1.21492 0.98684 0.95141 0.92766 1.23835 0.99259 1.02806 0.89303 1.70414 1.22459 1.10797 1.21396 1.29258 0.88057 0.97519 0.88440 1.84496 1.52485 1.48751 1.23890 1.21027 0.97107 1.00357 0.94533 1.20940 0.98357 0.95495 0.93939 1.23106 1.01382 0.99136 0.80059 1.21572 0.91748 0.93669 0.86912 0.91651 1.42355 1.86268 1.06252 1.00727 1.19543 1.40964 0.92791 0.84540 0.90869 1.25489 1.03214 0.95911 1.01412 1.69784 1.57877 1.03716 1.29883 0.85302 0.78106 0.76841 0.80034 1.21029 1.22112 1.20133 0.91796 0.93984 0.89379 0.87207 0.87374 0.79460 0.80972 0.77188 0.69061 0.83939 0.85450 0.93649 0.93370 0.78910 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.14 71.98 0.66 -2.12 16 2 C -0.11 -2.75 3.19 -9.61 -0.03 -2.78 16 3 H 0.08 2.23 8.00 -2.38 -0.02 2.21 16 4 C 0.09 1.89 4.47 86.73 0.39 2.28 16 5 N -0.60 -18.12 3.33 -830.41 -2.76 -20.88 16 6 C 0.56 18.07 7.80 86.71 0.68 18.75 16 7 O -0.59 -24.45 16.66 -4.01 -0.07 -24.52 16 8 C -0.14 -3.23 5.88 -20.05 -0.12 -3.35 16 9 C -0.11 -1.70 8.53 22.26 0.19 -1.51 16 10 C -0.09 -1.13 9.51 22.26 0.21 -0.92 16 11 C 0.01 0.08 5.88 -20.05 -0.12 -0.04 16 12 C -0.03 -0.42 7.06 24.21 0.17 -0.25 16 13 C -0.01 -0.17 11.29 83.83 0.95 0.78 16 14 N -0.52 -7.79 11.27 -315.03 -3.55 -11.34 16 15 C 0.19 1.87 13.21 130.45 1.72 3.59 16 16 O -0.21 -2.98 10.57 -7.73 -0.08 -3.07 16 17 C -0.11 -2.03 9.67 22.26 0.22 -1.81 16 18 C -0.07 -1.55 9.53 22.26 0.21 -1.33 16 19 C 0.09 3.38 6.59 86.93 0.57 3.95 16 20 C 0.17 6.30 3.17 46.46 0.15 6.45 16 21 H 0.07 2.44 8.00 -2.39 -0.02 2.43 16 22 N -0.72 -34.08 5.25 -316.03 -1.66 -35.74 16 23 C -0.25 -13.26 9.96 84.04 0.84 -12.43 16 24 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 25 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 26 N -0.96 -57.15 13.06 21.65 0.28 -56.87 16 27 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 28 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 29 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 30 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 31 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.11 1.58 6.31 -2.39 -0.02 1.57 16 35 H 0.11 1.54 6.81 -2.38 -0.02 1.52 16 36 H 0.19 2.13 2.74 -8.80 -0.02 2.11 16 37 H 0.17 0.79 7.02 -2.91 -0.02 0.77 16 38 H 0.21 1.49 7.29 -2.91 -0.02 1.46 16 39 H 0.29 -0.40 8.06 -2.91 -0.02 -0.42 16 40 H 0.14 2.18 7.93 -2.91 -0.02 2.16 16 41 H 0.13 3.12 7.66 -2.91 -0.02 3.10 16 42 H 0.04 1.92 8.09 -2.39 -0.02 1.91 16 43 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.38 19.15 7.76 -92.71 -0.72 18.43 16 45 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -77.48 375.73 1.65 -75.83 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.31 Total: 23.03 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 7.15 Total: 5.96 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -7.69 Total: -124.83 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.15 Total: -27.59 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -77.48 1.65 -75.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054801011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.019 kcal (2) G-P(sol) polarization free energy of solvation -77.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds