Wall clock time and date at job start Wed Apr 1 2020 00:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.88899 * 2 1 4 4 C 1.54910 * 111.00394 * 123.87560 * 2 1 3 5 5 N 1.47418 * 104.83674 * 155.08289 * 4 2 1 6 6 C 1.34773 * 125.65301 * 155.83535 * 5 4 2 7 7 O 1.21490 * 120.00137 * 354.52110 * 6 5 4 8 8 C 1.48291 * 120.00293 * 174.52631 * 6 5 4 9 9 C 1.35676 * 118.87195 * 186.65003 * 8 6 5 10 10 C 1.42054 * 119.93874 * 179.75255 * 9 8 6 11 11 O 1.21925 * 121.07238 * 180.24843 * 10 9 8 12 12 C 1.47223 * 117.85780 * 0.52256 * 10 9 8 13 13 C 1.39583 * 121.36132 * 179.77069 * 12 10 9 14 14 C 1.36643 * 119.69528 * 180.02562 * 13 12 10 15 15 C 1.38894 * 120.55596 * 359.95223 * 14 13 12 16 16 C 1.37706 * 120.71810 * 0.02562 * 15 14 13 17 17 C 1.39283 * 119.72020 * 0.02562 * 16 15 14 18 18 N 1.36458 * 118.87129 * 6.91645 * 8 6 5 19 19 H 0.97004 * 119.18533 * 359.97438 * 18 8 6 20 20 C 1.47026 * 108.70315 * 335.87326 * 5 4 2 21 21 C 1.54374 * 107.28392 * 1.09033 * 20 5 4 22 22 H 1.08996 * 110.75349 * 140.51082 * 21 20 5 23 23 N 1.46509 * 110.70488 * 263.79491 * 21 20 5 24 24 C 1.36936 * 119.99667 * 268.49152 * 23 21 20 25 25 H 1.08002 * 120.00384 * 359.97438 * 24 23 21 26 26 C 1.38811 * 119.99681 * 180.02562 * 24 23 21 27 27 N 1.31618 * 120.00194 * 359.97438 * 26 24 23 28 28 Si 1.86804 * 120.00150 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46790 * 359.97438 * 28 26 24 30 30 H 1.48498 * 109.47201 * 119.99545 * 28 26 24 31 31 H 1.48504 * 109.46775 * 240.00171 * 28 26 24 32 32 H 1.08999 * 109.47026 * 300.70357 * 1 2 3 33 33 H 1.09003 * 109.47157 * 180.70996 * 1 2 3 34 34 H 1.08992 * 109.46853 * 60.70541 * 1 2 3 35 35 H 1.09002 * 110.36791 * 273.92353 * 4 2 1 36 36 H 1.09009 * 110.36983 * 36.13379 * 4 2 1 37 37 H 1.08001 * 120.03192 * 359.97438 * 9 8 6 38 38 H 1.08007 * 120.16067 * 359.97438 * 13 12 10 39 39 H 1.07995 * 119.72580 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.63466 * 180.02562 * 15 14 13 41 41 H 1.08004 * 120.13855 * 179.97438 * 16 15 14 42 42 H 1.08996 * 109.88566 * 120.47031 * 20 5 4 43 43 H 1.09003 * 109.88162 * 241.48733 * 20 5 4 44 44 H 0.96995 * 119.99884 * 88.48240 * 23 21 20 45 45 H 0.96996 * 120.00370 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8061 1.2007 5 7 3.4271 -1.2428 0.7740 6 6 4.4480 -1.5596 1.5948 7 8 4.3348 -1.4016 2.7941 8 6 5.7096 -2.1010 1.0342 9 6 6.6700 -2.5396 1.8862 10 6 7.8852 -3.0675 1.3737 11 8 8.7603 -3.4715 2.1203 12 6 8.0564 -3.1052 -0.0881 13 6 9.2228 -3.6043 -0.6702 14 6 9.3458 -3.6228 -2.0310 15 6 8.3199 -3.1502 -2.8392 16 6 7.1605 -2.6540 -2.2862 17 6 7.0135 -2.6244 -0.9014 18 7 5.8669 -2.1359 -0.3208 19 1 5.1524 -1.8072 -0.8886 20 6 3.4675 -1.2745 -0.6953 21 6 2.0862 -0.8076 -1.2024 22 1 2.1923 -0.1695 -2.0796 23 7 1.2268 -1.9571 -1.4967 24 6 1.2058 -2.4912 -2.7574 25 1 1.8225 -2.0649 -3.5349 26 6 0.3912 -3.5800 -3.0364 27 7 -0.3607 -4.0992 -2.0891 28 14 0.3620 -4.3083 -4.7563 29 1 1.2900 -3.5479 -5.6316 30 1 0.7876 -5.7298 -4.6993 31 1 -1.0153 -4.2254 -5.3056 32 1 -0.3633 0.5247 0.8836 33 1 -0.3633 -1.0276 0.0127 34 1 -0.3633 0.5028 -0.8962 35 1 2.1560 -0.1710 2.0838 36 1 1.4508 -1.6687 1.4045 37 1 6.5094 -2.4908 2.9531 38 1 10.0248 -3.9733 -0.0480 39 1 10.2482 -4.0084 -2.4819 40 1 8.4327 -3.1723 -3.9131 41 1 6.3688 -2.2886 -2.9235 42 1 4.2426 -0.6003 -1.0596 43 1 3.6678 -2.2895 -1.0388 44 1 0.6728 -2.3398 -0.7985 45 1 -0.9303 -4.8597 -2.2841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054875634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:32 Heat of formation + Delta-G solvation = 17.503437 kcal Electronic energy + Delta-G solvation = -29812.891059 eV Core-core repulsion = 25796.737721 eV Total energy + Delta-G solvation = -4016.153338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58187 -40.02394 -38.22016 -37.98500 -37.13114 -34.30537 -32.75275 -32.21683 -31.01845 -30.77816 -29.91867 -28.24843 -26.88517 -24.88603 -24.08861 -23.70054 -22.79192 -21.92596 -20.53336 -19.62156 -18.60059 -18.38221 -17.81740 -17.26902 -16.50469 -16.24903 -15.76960 -15.52358 -15.13224 -14.79681 -14.64771 -14.51350 -14.18265 -14.06676 -13.88765 -13.53313 -13.38544 -13.34078 -13.11021 -12.95716 -12.43000 -12.27681 -12.08411 -12.06844 -11.87192 -11.47824 -11.32761 -11.10925 -10.97563 -10.69802 -10.44148 -10.36701 -10.14803 -9.88212 -9.62854 -9.57870 -9.24757 -9.21637 -8.73822 -7.87913 -7.32014 -6.04289 -3.36777 0.34682 0.74974 1.40147 2.52975 2.63118 2.81833 3.09030 3.26252 3.31401 3.35322 3.86261 3.99967 4.28835 4.33633 4.46995 4.66259 4.72264 4.74383 4.93239 4.99464 5.02306 5.10216 5.12571 5.32739 5.37508 5.41915 5.48340 5.64690 5.70093 5.72416 5.73818 5.84800 5.89169 5.95900 6.02044 6.09585 6.15018 6.18980 6.26603 6.33466 6.43498 6.46831 6.73995 6.76695 6.84826 7.30783 7.43574 7.77847 7.84390 8.12187 9.25061 9.75961 10.10449 11.17039 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009651 B = 0.004017 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.654366 B = 6968.916065 C = 9069.936227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.082 0.918 4 C 0.113 3.887 5 N -0.600 5.600 6 C 0.564 3.436 7 O -0.514 6.514 8 C 0.167 3.833 9 C -0.246 4.246 10 C 0.420 3.580 11 O -0.492 6.492 12 C -0.205 4.205 13 C -0.029 4.029 14 C -0.164 4.164 15 C -0.053 4.053 16 C -0.172 4.172 17 C 0.200 3.800 18 N -0.614 5.614 19 H 0.426 0.574 20 C 0.039 3.961 21 C 0.178 3.822 22 H 0.081 0.919 23 N -0.707 5.707 24 C -0.260 4.260 25 H 0.074 0.926 26 C -0.001 4.001 27 N -0.923 5.923 28 Si 0.907 3.093 29 H -0.279 1.279 30 H -0.290 1.290 31 H -0.289 1.289 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.162 0.838 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.389 0.611 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.699 7.219 -0.772 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 H 0.100 0.900 4 C -0.008 4.008 5 N -0.333 5.333 6 C 0.350 3.650 7 O -0.389 6.389 8 C 0.055 3.945 9 C -0.274 4.274 10 C 0.308 3.692 11 O -0.375 6.375 12 C -0.209 4.209 13 C -0.047 4.047 14 C -0.183 4.183 15 C -0.072 4.072 16 C -0.193 4.193 17 C 0.096 3.904 18 N -0.239 5.239 19 H 0.279 0.721 20 C -0.088 4.088 21 C 0.064 3.936 22 H 0.099 0.901 23 N -0.348 5.348 24 C -0.390 4.390 25 H 0.092 0.908 26 C -0.199 4.199 27 N -0.570 5.570 28 Si 0.738 3.262 29 H -0.204 1.204 30 H -0.217 1.217 31 H -0.216 1.216 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.180 0.820 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.075 7.010 0.131 13.963 hybrid contribution -0.554 -0.597 -1.120 1.384 sum 11.522 6.413 -0.988 13.223 Atomic orbital electron populations 1.21555 0.92849 1.03480 1.01048 1.22676 0.97438 0.98541 0.94807 0.89969 1.22423 0.81515 0.98965 0.97943 1.48424 1.12560 1.64918 1.07415 1.17769 0.82051 0.79053 0.86097 1.90815 1.81037 1.53375 1.13700 1.20116 0.94975 0.96059 0.83346 1.22387 0.95020 1.08431 1.01586 1.18459 0.86547 0.76876 0.87353 1.90691 1.43593 1.42273 1.60907 1.20371 0.96155 1.08833 0.95587 1.20842 0.95515 0.93391 0.94994 1.20866 1.00094 1.03870 0.93484 1.21145 0.91940 0.93793 1.00319 1.20773 1.00417 1.06565 0.91510 1.18002 0.85937 0.93688 0.92760 1.42977 1.18158 1.57096 1.05714 0.72124 1.23754 1.03632 1.01990 0.79400 1.21162 0.87098 0.90138 0.95155 0.90144 1.42475 1.48467 1.32789 1.11029 1.19246 1.21661 1.10462 0.87631 0.90788 1.24779 0.98842 0.98526 0.97767 1.69652 1.29503 1.25949 1.31861 0.86144 0.77493 0.78942 0.83663 1.20395 1.21692 1.21623 0.93439 0.90885 0.91984 0.90379 0.90424 0.82010 0.84513 0.85308 0.84926 0.84541 0.91797 0.89288 0.77549 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.91 37.16 0.33 -1.45 16 2 C -0.11 -1.49 3.51 -88.47 -0.31 -1.80 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.11 1.59 6.36 -2.53 -0.02 1.57 16 5 N -0.60 -8.73 3.33 -173.39 -0.58 -9.31 16 6 C 0.56 8.91 7.81 -12.13 -0.09 8.81 16 7 O -0.51 -9.31 16.43 5.37 0.09 -9.22 16 8 C 0.17 2.44 6.72 -82.59 -0.55 1.89 16 9 C -0.25 -3.81 9.48 -39.04 -0.37 -4.18 16 10 C 0.42 6.75 6.97 -34.47 -0.24 6.51 16 11 O -0.49 -8.99 17.34 4.99 0.09 -8.90 16 12 C -0.21 -2.86 5.89 -104.81 -0.62 -3.48 16 13 C -0.03 -0.34 9.61 -39.66 -0.38 -0.72 16 14 C -0.16 -1.55 9.98 -39.92 -0.40 -1.95 16 15 C -0.05 -0.48 10.01 -39.53 -0.40 -0.88 16 16 C -0.17 -1.80 9.91 -39.39 -0.39 -2.19 16 17 C 0.20 2.55 6.66 -84.00 -0.56 2.00 16 18 N -0.61 -7.93 5.04 -7.44 -0.04 -7.97 16 19 H 0.43 5.04 2.83 -43.36 -0.12 4.92 16 20 C 0.04 0.53 4.76 -3.04 -0.01 0.52 16 21 C 0.18 2.70 3.39 -66.07 -0.22 2.48 16 22 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 23 N -0.71 -14.37 4.49 -51.62 -0.23 -14.60 16 24 C -0.26 -6.07 9.96 -15.06 -0.15 -6.22 16 25 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 26 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 27 N -0.92 -25.14 13.06 55.49 0.72 -24.42 16 28 Si 0.91 20.16 29.55 -169.99 -5.02 15.13 16 29 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 30 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 31 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.18 6.40 -51.93 -0.33 0.85 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.04 7.99 -51.93 -0.41 0.63 16 36 H 0.08 1.20 8.03 -51.92 -0.42 0.78 16 37 H 0.16 2.52 7.49 -52.49 -0.39 2.12 16 38 H 0.14 1.53 7.78 -52.48 -0.41 1.12 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 41 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 42 H 0.06 0.69 6.96 -51.93 -0.36 0.33 16 43 H 0.09 1.36 6.93 -51.93 -0.36 1.00 16 44 H 0.39 8.68 6.27 -40.82 -0.26 8.43 16 45 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -30.00 369.50 -9.45 -39.46 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.57 Total: 13.50 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -4.48 Total: 0.77 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.12 Total: -56.30 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.12 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.00 -9.45 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054875634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.959 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds