Wall clock time and date at job start Wed Apr 1 2020 00:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.88899 * 2 1 4 4 C 1.54910 * 111.00394 * 123.87560 * 2 1 3 5 5 N 1.47418 * 104.83674 * 155.08289 * 4 2 1 6 6 C 1.34773 * 125.65301 * 155.83535 * 5 4 2 7 7 O 1.21490 * 120.00137 * 354.52110 * 6 5 4 8 8 C 1.48291 * 120.00293 * 174.52631 * 6 5 4 9 9 C 1.35676 * 118.87195 * 186.65003 * 8 6 5 10 10 C 1.42054 * 119.93874 * 179.75255 * 9 8 6 11 11 O 1.21925 * 121.07238 * 180.24843 * 10 9 8 12 12 C 1.47223 * 117.85780 * 0.52256 * 10 9 8 13 13 C 1.39583 * 121.36132 * 179.77069 * 12 10 9 14 14 C 1.36643 * 119.69528 * 180.02562 * 13 12 10 15 15 C 1.38894 * 120.55596 * 359.95223 * 14 13 12 16 16 C 1.37706 * 120.71810 * 0.02562 * 15 14 13 17 17 C 1.39283 * 119.72020 * 0.02562 * 16 15 14 18 18 N 1.36458 * 118.87129 * 6.91645 * 8 6 5 19 19 H 0.97004 * 119.18533 * 359.97438 * 18 8 6 20 20 C 1.47026 * 108.70315 * 335.87326 * 5 4 2 21 21 C 1.54374 * 107.28392 * 1.09033 * 20 5 4 22 22 H 1.08996 * 110.75349 * 140.51082 * 21 20 5 23 23 N 1.46509 * 110.70488 * 263.79491 * 21 20 5 24 24 C 1.36936 * 119.99667 * 268.49152 * 23 21 20 25 25 H 1.08002 * 120.00384 * 359.97438 * 24 23 21 26 26 C 1.38811 * 119.99681 * 180.02562 * 24 23 21 27 27 N 1.31618 * 120.00194 * 359.97438 * 26 24 23 28 28 Si 1.86804 * 120.00150 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46790 * 359.97438 * 28 26 24 30 30 H 1.48498 * 109.47201 * 119.99545 * 28 26 24 31 31 H 1.48504 * 109.46775 * 240.00171 * 28 26 24 32 32 H 1.08999 * 109.47026 * 300.70357 * 1 2 3 33 33 H 1.09003 * 109.47157 * 180.70996 * 1 2 3 34 34 H 1.08992 * 109.46853 * 60.70541 * 1 2 3 35 35 H 1.09002 * 110.36791 * 273.92353 * 4 2 1 36 36 H 1.09009 * 110.36983 * 36.13379 * 4 2 1 37 37 H 1.08001 * 120.03192 * 359.97438 * 9 8 6 38 38 H 1.08007 * 120.16067 * 359.97438 * 13 12 10 39 39 H 1.07995 * 119.72580 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.63466 * 180.02562 * 15 14 13 41 41 H 1.08004 * 120.13855 * 179.97438 * 16 15 14 42 42 H 1.08996 * 109.88566 * 120.47031 * 20 5 4 43 43 H 1.09003 * 109.88162 * 241.48733 * 20 5 4 44 44 H 0.96995 * 119.99884 * 88.48240 * 23 21 20 45 45 H 0.96996 * 120.00370 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8061 1.2007 5 7 3.4271 -1.2428 0.7740 6 6 4.4480 -1.5596 1.5948 7 8 4.3348 -1.4016 2.7941 8 6 5.7096 -2.1010 1.0342 9 6 6.6700 -2.5396 1.8862 10 6 7.8852 -3.0675 1.3737 11 8 8.7603 -3.4715 2.1203 12 6 8.0564 -3.1052 -0.0881 13 6 9.2228 -3.6043 -0.6702 14 6 9.3458 -3.6228 -2.0310 15 6 8.3199 -3.1502 -2.8392 16 6 7.1605 -2.6540 -2.2862 17 6 7.0135 -2.6244 -0.9014 18 7 5.8669 -2.1359 -0.3208 19 1 5.1524 -1.8072 -0.8886 20 6 3.4675 -1.2745 -0.6953 21 6 2.0862 -0.8076 -1.2024 22 1 2.1923 -0.1695 -2.0796 23 7 1.2268 -1.9571 -1.4967 24 6 1.2058 -2.4912 -2.7574 25 1 1.8225 -2.0649 -3.5349 26 6 0.3912 -3.5800 -3.0364 27 7 -0.3607 -4.0992 -2.0891 28 14 0.3620 -4.3083 -4.7563 29 1 1.2900 -3.5479 -5.6316 30 1 0.7876 -5.7298 -4.6993 31 1 -1.0153 -4.2254 -5.3056 32 1 -0.3633 0.5247 0.8836 33 1 -0.3633 -1.0276 0.0127 34 1 -0.3633 0.5028 -0.8962 35 1 2.1560 -0.1710 2.0838 36 1 1.4508 -1.6687 1.4045 37 1 6.5094 -2.4908 2.9531 38 1 10.0248 -3.9733 -0.0480 39 1 10.2482 -4.0084 -2.4819 40 1 8.4327 -3.1723 -3.9131 41 1 6.3688 -2.2886 -2.9235 42 1 4.2426 -0.6003 -1.0596 43 1 3.6678 -2.2895 -1.0388 44 1 0.6728 -2.3398 -0.7985 45 1 -0.9303 -4.8597 -2.2841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054875634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:31 Heat of formation + Delta-G solvation = -0.163471 kcal Electronic energy + Delta-G solvation = -29813.657154 eV Core-core repulsion = 25796.737721 eV Total energy + Delta-G solvation = -4016.919433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.69297 -41.17014 -39.41358 -39.20096 -38.15276 -35.84580 -34.11256 -33.29766 -32.38155 -31.86218 -30.93212 -29.63290 -28.01424 -26.16599 -25.57817 -24.68863 -23.93523 -23.02386 -21.66762 -20.83168 -19.64341 -19.51443 -19.27916 -18.52774 -17.63558 -17.48155 -16.98647 -16.72277 -16.40259 -16.13211 -15.81533 -15.59267 -15.46103 -15.12594 -15.02381 -14.80161 -14.61235 -14.51565 -14.35228 -14.25385 -13.59633 -13.43925 -13.14049 -13.04968 -12.91884 -12.89234 -12.83988 -12.38235 -12.26814 -12.06950 -11.96793 -11.68669 -11.48483 -11.38720 -10.99026 -10.81198 -10.62665 -10.10292 -9.94520 -9.04886 -8.91340 -7.92342 -5.21258 -0.78280 -0.20422 0.48360 1.34496 1.44820 1.51303 1.53518 1.61385 1.70716 2.03948 2.58047 2.84102 2.87591 3.23072 3.35812 3.50846 3.61244 3.69141 3.77818 3.82407 3.94353 4.02148 4.23176 4.24896 4.31732 4.34510 4.36355 4.50785 4.62106 4.66940 4.75107 4.77878 4.82802 4.88057 4.93519 4.96987 5.03082 5.17404 5.29469 5.36046 5.47029 5.51372 5.57869 5.61862 5.77046 5.93006 6.08773 6.28049 6.58263 6.61882 7.37275 8.09325 8.30997 9.30651 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009651 B = 0.004017 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.654366 B = 6968.916065 C = 9069.936227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 H 0.116 0.884 4 C 0.110 3.890 5 N -0.596 5.596 6 C 0.563 3.437 7 O -0.542 6.542 8 C 0.179 3.821 9 C -0.268 4.268 10 C 0.411 3.589 11 O -0.534 6.534 12 C -0.226 4.226 13 C -0.047 4.047 14 C -0.149 4.149 15 C -0.043 4.043 16 C -0.171 4.171 17 C 0.183 3.817 18 N -0.600 5.600 19 H 0.432 0.568 20 C 0.044 3.956 21 C 0.170 3.830 22 H 0.101 0.899 23 N -0.720 5.720 24 C -0.235 4.235 25 H 0.092 0.908 26 C -0.069 4.069 27 N -0.967 5.967 28 Si 0.961 3.039 29 H -0.256 1.256 30 H -0.305 1.305 31 H -0.303 1.303 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.151 0.849 38 H 0.134 0.866 39 H 0.162 0.838 40 H 0.172 0.828 41 H 0.161 0.839 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.375 0.625 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.176 9.115 -3.985 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.134 0.866 4 C -0.011 4.011 5 N -0.328 5.328 6 C 0.350 3.650 7 O -0.420 6.420 8 C 0.065 3.935 9 C -0.296 4.296 10 C 0.302 3.698 11 O -0.420 6.420 12 C -0.230 4.230 13 C -0.065 4.065 14 C -0.168 4.168 15 C -0.061 4.061 16 C -0.191 4.191 17 C 0.079 3.921 18 N -0.226 5.226 19 H 0.285 0.715 20 C -0.082 4.082 21 C 0.059 3.941 22 H 0.119 0.881 23 N -0.359 5.359 24 C -0.367 4.367 25 H 0.110 0.890 26 C -0.261 4.261 27 N -0.618 5.618 28 Si 0.792 3.208 29 H -0.180 1.180 30 H -0.233 1.233 31 H -0.231 1.231 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.179 0.821 40 H 0.190 0.810 41 H 0.178 0.822 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.209 0.791 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.590 8.969 -3.146 16.584 hybrid contribution -0.963 -1.100 -0.200 1.475 sum 12.627 7.869 -3.346 15.250 Atomic orbital electron populations 1.21483 0.93294 1.01594 1.02090 1.22650 0.96917 0.99565 0.92773 0.86593 1.22469 0.80968 0.98581 0.99095 1.48466 1.12350 1.64133 1.07857 1.17878 0.82479 0.78822 0.85830 1.90798 1.81629 1.54618 1.14942 1.19910 0.94079 0.95337 0.84129 1.22282 0.95742 1.10203 1.01374 1.18768 0.86138 0.76245 0.88651 1.90652 1.44699 1.44641 1.61960 1.20378 0.97788 1.10524 0.94322 1.20992 0.94956 0.94144 0.96430 1.21278 1.01304 1.01902 0.92271 1.21655 0.90687 0.91548 1.02237 1.21155 1.01670 1.05942 0.90323 1.18241 0.85449 0.94554 0.93814 1.42913 1.18497 1.56380 1.04835 0.71469 1.23661 1.03710 1.02197 0.78612 1.21463 0.86845 0.88888 0.96920 0.88094 1.42647 1.49312 1.34126 1.09797 1.19722 1.19240 1.08798 0.88905 0.89035 1.25445 1.00096 1.00183 1.00410 1.69805 1.31532 1.26852 1.33586 0.85256 0.76976 0.77639 0.80952 1.17971 1.23274 1.23052 0.91249 0.94225 0.92043 0.89407 0.92490 0.83179 0.84825 0.82088 0.81045 0.82187 0.87754 0.90697 0.79090 0.94376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.91 71.98 0.64 -2.58 16 2 C -0.10 -2.30 3.51 -9.40 -0.03 -2.33 16 3 H 0.12 2.02 8.14 -2.39 -0.02 2.01 16 4 C 0.11 2.96 6.36 86.86 0.55 3.51 16 5 N -0.60 -16.45 3.33 -820.78 -2.73 -19.18 16 6 C 0.56 17.61 7.81 86.92 0.68 18.29 16 7 O -0.54 -19.98 16.43 -3.68 -0.06 -20.04 16 8 C 0.18 5.24 6.72 40.51 0.27 5.51 16 9 C -0.27 -8.71 9.48 22.62 0.21 -8.50 16 10 C 0.41 13.86 6.97 25.58 0.18 14.03 16 11 O -0.53 -20.78 17.34 -5.07 -0.09 -20.87 16 12 C -0.23 -6.23 5.89 -19.98 -0.12 -6.35 16 13 C -0.05 -1.05 9.61 22.22 0.21 -0.83 16 14 C -0.15 -2.25 9.98 22.05 0.22 -2.03 16 15 C -0.04 -0.56 10.01 22.30 0.22 -0.34 16 16 C -0.17 -2.87 9.91 22.40 0.22 -2.65 16 17 C 0.18 4.30 6.66 39.12 0.26 4.56 16 18 N -0.60 -14.49 5.04 -177.44 -0.89 -15.38 16 19 H 0.43 8.95 2.83 -95.10 -0.27 8.68 16 20 C 0.04 1.06 4.76 86.75 0.41 1.47 16 21 C 0.17 4.64 3.39 46.19 0.16 4.80 16 22 H 0.10 2.43 8.09 -2.39 -0.02 2.41 16 23 N -0.72 -28.36 4.49 -317.24 -1.42 -29.78 16 24 C -0.24 -10.58 9.96 84.03 0.84 -9.74 16 25 H 0.09 3.74 7.83 -2.91 -0.02 3.72 16 26 C -0.07 -3.45 5.50 84.86 0.47 -2.99 16 27 N -0.97 -54.01 13.06 21.65 0.28 -53.73 16 28 Si 0.96 41.12 29.55 68.60 2.03 43.15 16 29 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 30 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 31 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.28 6.40 -2.39 -0.02 1.27 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 2.21 7.99 -2.39 -0.02 2.19 16 36 H 0.06 1.78 8.03 -2.38 -0.02 1.76 16 37 H 0.15 5.10 7.49 -2.91 -0.02 5.08 16 38 H 0.13 3.00 7.78 -2.91 -0.02 2.97 16 39 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 40 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 41 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 42 H 0.10 1.76 6.96 -2.39 -0.02 1.75 16 43 H 0.08 2.11 6.93 -2.39 -0.02 2.09 16 44 H 0.38 16.94 6.27 -92.71 -0.58 16.36 16 45 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -68.94 369.50 2.71 -66.23 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: 0.20 Total: 35.76 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.40 Total: 13.84 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -4.77 Total: -118.07 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.15 Total: -40.91 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -68.94 2.71 -66.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054875634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.065 kcal (2) G-P(sol) polarization free energy of solvation -68.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds