Wall clock time and date at job start Wed Apr 1 2020 00:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.91573 * 2 1 4 4 C 1.55122 * 111.16258 * 236.07413 * 2 1 3 5 5 N 1.47416 * 104.94560 * 205.13059 * 4 2 1 6 6 C 1.36940 * 125.65246 * 204.04389 * 5 4 2 7 7 H 1.08005 * 119.99541 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00413 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99614 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00079 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47229 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47220 * 119.99342 * 10 8 6 13 13 H 1.48501 * 109.47098 * 239.99947 * 10 8 6 14 14 C 1.47027 * 108.70353 * 24.00330 * 5 4 2 15 15 C 1.54326 * 107.26656 * 358.93860 * 14 5 4 16 16 H 1.09006 * 110.71526 * 96.35352 * 15 14 5 17 17 N 1.46504 * 110.71670 * 219.44103 * 15 14 5 18 18 C 1.34775 * 120.00132 * 271.16202 * 17 15 14 19 19 O 1.21555 * 120.00263 * 0.02562 * 18 17 15 20 20 C 1.47867 * 120.00093 * 180.02562 * 18 17 15 21 21 C 1.39685 * 120.07025 * 359.97438 * 20 18 17 22 22 C 1.38058 * 120.14297 * 179.97438 * 21 20 18 23 23 C 1.38099 * 120.30241 * 359.97438 * 22 21 20 24 24 C 1.39642 * 120.14582 * 0.02562 * 23 22 21 25 25 C 1.47845 * 120.07475 * 179.97438 * 24 23 22 26 26 C 1.35767 * 126.58192 * 359.73899 * 25 24 23 27 27 N 1.34143 * 107.51667 * 179.89754 * 26 25 24 28 28 C 1.30361 * 108.89795 * 0.36597 * 27 26 25 29 29 O 1.33994 * 109.04005 * 359.77441 * 28 27 26 30 30 C 1.39310 * 120.07587 * 179.97438 * 20 18 17 31 31 H 1.09001 * 109.47157 * 296.09410 * 1 2 3 32 32 H 1.08999 * 109.47600 * 56.09598 * 1 2 3 33 33 H 1.08999 * 109.47294 * 176.09691 * 1 2 3 34 34 H 1.09005 * 110.41975 * 86.19979 * 4 2 1 35 35 H 1.08998 * 110.29700 * 324.00216 * 4 2 1 36 36 H 0.97006 * 119.99638 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.87848 * 239.52696 * 14 5 4 38 38 H 1.08996 * 110.00859 * 118.43042 * 14 5 4 39 39 H 0.97002 * 119.99861 * 91.16800 * 17 15 14 40 40 H 1.07998 * 119.92794 * 359.70159 * 21 20 18 41 41 H 1.08001 * 119.84551 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.92621 * 180.02562 * 23 22 21 43 43 H 1.07996 * 126.23816 * 0.03196 * 26 25 24 44 44 H 1.08008 * 125.47957 * 179.74790 * 28 27 26 45 45 H 1.08001 * 120.14642 * 0.04814 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4297 -1.2473 -0.7707 6 6 4.4679 -1.5727 -1.6024 7 1 4.3396 -1.5172 -2.6733 8 6 5.6851 -1.9737 -1.0690 9 7 5.8415 -2.0408 0.2361 10 14 7.1009 -2.4181 -2.2036 11 1 6.6710 -2.2617 -3.6164 12 1 8.2522 -1.5198 -1.9338 13 1 7.5049 -3.8267 -1.9627 14 6 3.4671 -1.2781 0.6988 15 6 2.0861 -0.8079 1.2021 16 1 1.4451 -1.6615 1.4229 17 7 2.2287 0.0495 2.3815 18 6 2.2499 -0.4969 3.6133 19 8 2.1513 -1.7012 3.7458 20 6 2.3933 0.3685 4.8036 21 6 2.5074 1.7525 4.6531 22 6 2.6408 2.5620 5.7635 23 6 2.6618 2.0105 7.0294 24 6 2.5487 0.6284 7.1942 25 6 2.5721 0.0396 8.5501 26 6 2.7018 0.7123 9.7222 27 7 2.6725 -0.1923 10.7123 28 6 2.5391 -1.3811 10.1942 29 8 2.4742 -1.2719 8.8603 30 6 2.4149 -0.1946 6.0777 31 1 -0.3633 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0700 34 1 2.1641 -0.1732 -2.0838 35 1 1.4552 -1.6694 -1.4053 36 1 6.6923 -2.3208 0.6088 37 1 4.2434 -0.6057 1.0640 38 1 3.6624 -2.2928 1.0457 39 1 2.3078 1.0105 2.2757 40 1 2.4956 2.1899 3.6657 41 1 2.7290 3.6315 5.6415 42 1 2.7660 2.6495 7.8938 43 1 2.8069 1.7810 9.8367 44 1 2.4893 -2.3055 10.7507 45 1 2.3278 -1.2642 6.1995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080706231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:28 Heat of formation + Delta-G solvation = 44.260324 kcal Electronic energy + Delta-G solvation = -28617.865839 eV Core-core repulsion = 24602.872766 eV Total energy + Delta-G solvation = -4014.993073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.56295 -40.20166 -38.69108 -37.35616 -35.06670 -34.08505 -33.10453 -32.40939 -31.37369 -30.39011 -29.04126 -27.71265 -25.66802 -24.59069 -23.97492 -23.38654 -22.42670 -21.65567 -20.60287 -20.07627 -19.63860 -18.44426 -17.33219 -16.89096 -16.85353 -16.41743 -16.01064 -15.48877 -15.24957 -14.88151 -14.48426 -14.31896 -14.11856 -13.95401 -13.72329 -13.49687 -13.16842 -12.94280 -12.82380 -12.70363 -12.08549 -11.96220 -11.71349 -11.70046 -11.59418 -11.36378 -11.04026 -10.92498 -10.80327 -10.65304 -10.39880 -10.23269 -10.00220 -9.93252 -9.75085 -9.63516 -9.26847 -8.63865 -8.52655 -8.41691 -6.84259 -5.69686 -3.05113 0.26657 0.79913 1.59685 2.36605 2.39595 2.97737 3.34240 3.40362 3.45396 3.48276 3.77546 3.90556 4.27776 4.49143 4.55473 4.57220 4.67148 4.83797 4.86278 5.04358 5.06989 5.27369 5.29310 5.40463 5.41498 5.54312 5.55426 5.66825 5.73176 5.94478 5.95509 5.95924 6.02214 6.05519 6.09108 6.12187 6.18539 6.32901 6.46090 6.47984 6.60651 6.72061 6.90442 7.35490 7.54010 7.57589 7.81951 7.86030 8.24858 8.47977 9.21072 9.81872 10.46478 11.40949 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.002511 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.095729 B =11148.642620 C =12175.389347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.080 0.920 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.089 0.911 17 N -0.705 5.705 18 C 0.554 3.446 19 O -0.531 6.531 20 C -0.119 4.119 21 C -0.075 4.075 22 C -0.121 4.121 23 C -0.076 4.076 24 C -0.030 4.030 25 C 0.006 3.994 26 C -0.027 4.027 27 N -0.488 5.488 28 C 0.174 3.826 29 O -0.195 6.195 30 C -0.040 4.040 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.395 0.605 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.186 0.814 44 H 0.252 0.748 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.439 10.618 15.523 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.047 3.953 15 C 0.015 3.985 16 H 0.107 0.893 17 N -0.355 5.355 18 C 0.340 3.660 19 O -0.408 6.408 20 C -0.122 4.122 21 C -0.094 4.094 22 C -0.139 4.139 23 C -0.094 4.094 24 C -0.030 4.030 25 C -0.047 4.047 26 C -0.166 4.166 27 N -0.216 5.216 28 C -0.051 4.051 29 O -0.080 6.080 30 C -0.059 4.059 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.230 0.770 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.203 0.797 44 H 0.268 0.732 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.246 9.714 16.217 21.502 hybrid contribution 0.935 0.003 -1.157 1.487 sum -9.311 9.716 15.060 20.197 Atomic orbital electron populations 1.21698 0.94964 1.01871 1.00988 1.22650 0.94852 0.99481 0.96393 0.90468 1.21618 0.87652 0.95022 0.94255 1.44413 1.08009 1.79086 1.01775 1.19090 0.89304 1.38465 0.88966 0.90252 1.24838 0.97926 1.01697 0.96015 1.69985 1.24207 1.53218 1.09117 0.86047 0.82373 0.77803 0.79537 1.20495 1.21796 1.21734 1.21475 0.89939 1.00466 0.83386 1.22551 1.00472 0.92752 0.82695 0.89274 1.45837 1.73518 1.10525 1.05634 1.18102 0.77139 0.87673 0.83054 1.90797 1.49333 1.14441 1.86219 1.20028 1.04443 0.93778 0.93934 1.21525 0.95791 0.92423 0.99638 1.20991 1.00917 1.00425 0.91523 1.21172 0.97425 0.92562 0.98238 1.17507 1.05134 0.92986 0.87403 1.21418 1.07027 0.80774 0.95529 1.23279 1.05840 1.00813 0.86701 1.70357 1.17776 0.99692 1.33750 1.28174 1.00112 0.99405 0.77455 1.84531 1.68921 1.27262 1.27324 1.21399 0.93499 1.00888 0.90113 0.93098 0.92728 0.92538 0.93944 0.96018 0.93774 0.93130 0.93350 0.77032 0.84936 0.84472 0.84923 0.79652 0.73235 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.32 37.16 0.35 -1.42 16 2 C -0.11 -1.84 3.27 -88.36 -0.29 -2.13 16 3 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 4 C 0.14 2.83 6.72 -2.42 -0.02 2.81 16 5 N -0.61 -15.45 3.40 -169.94 -0.58 -16.03 16 6 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 7 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.54 10.31 55.49 0.57 -26.97 16 10 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 C 0.17 4.28 5.13 -3.06 -0.02 4.26 16 15 C 0.12 2.26 2.74 -66.10 -0.18 2.08 16 16 H 0.09 1.80 7.52 -51.93 -0.39 1.41 16 17 N -0.70 -11.16 5.07 -52.96 -0.27 -11.43 16 18 C 0.55 9.46 7.77 -12.32 -0.10 9.37 16 19 O -0.53 -11.25 16.03 5.32 0.09 -11.17 16 20 C -0.12 -1.60 5.87 -105.02 -0.62 -2.21 16 21 C -0.08 -0.75 9.54 -39.11 -0.37 -1.12 16 22 C -0.12 -0.96 10.02 -39.70 -0.40 -1.36 16 23 C -0.08 -0.63 9.57 -39.11 -0.37 -1.01 16 24 C -0.03 -0.33 5.87 -105.03 -0.62 -0.94 16 25 C 0.01 0.06 7.07 -36.54 -0.26 -0.19 16 26 C -0.03 -0.26 11.29 -17.43 -0.20 -0.46 16 27 N -0.49 -5.17 11.27 -14.68 -0.17 -5.34 16 28 C 0.17 1.51 13.22 52.14 0.69 2.20 16 29 O -0.19 -2.19 10.59 4.24 0.04 -2.14 16 30 C -0.04 -0.53 9.27 -38.77 -0.36 -0.89 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 36 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.05 1.37 7.27 -51.93 -0.38 1.00 16 38 H 0.05 1.40 7.51 -51.93 -0.39 1.01 16 39 H 0.39 4.95 6.56 -40.82 -0.27 4.68 16 40 H 0.13 1.05 6.39 -52.49 -0.34 0.72 16 41 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.71 7.02 -52.49 -0.37 0.34 16 43 H 0.19 1.24 7.29 -52.49 -0.38 0.86 16 44 H 0.25 0.91 8.06 -52.48 -0.42 0.49 16 45 H 0.14 2.08 7.53 -52.49 -0.40 1.68 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -36.21 377.77 -8.46 -44.67 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.82 Total: 3.36 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -3.00 Total: 2.07 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.44 Total: -59.76 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.13 Total: -13.31 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.21 -8.46 -44.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080706231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.931 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds