Wall clock time and date at job start Wed Apr 1 2020 00:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.91573 * 2 1 4 4 C 1.55122 * 111.16258 * 236.07413 * 2 1 3 5 5 N 1.47416 * 104.94560 * 205.13059 * 4 2 1 6 6 C 1.36940 * 125.65246 * 204.04389 * 5 4 2 7 7 H 1.08005 * 119.99541 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00413 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99614 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00079 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47229 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47220 * 119.99342 * 10 8 6 13 13 H 1.48501 * 109.47098 * 239.99947 * 10 8 6 14 14 C 1.47027 * 108.70353 * 24.00330 * 5 4 2 15 15 C 1.54326 * 107.26656 * 358.93860 * 14 5 4 16 16 H 1.09006 * 110.71526 * 96.35352 * 15 14 5 17 17 N 1.46504 * 110.71670 * 219.44103 * 15 14 5 18 18 C 1.34775 * 120.00132 * 271.16202 * 17 15 14 19 19 O 1.21555 * 120.00263 * 0.02562 * 18 17 15 20 20 C 1.47867 * 120.00093 * 180.02562 * 18 17 15 21 21 C 1.39685 * 120.07025 * 359.97438 * 20 18 17 22 22 C 1.38058 * 120.14297 * 179.97438 * 21 20 18 23 23 C 1.38099 * 120.30241 * 359.97438 * 22 21 20 24 24 C 1.39642 * 120.14582 * 0.02562 * 23 22 21 25 25 C 1.47845 * 120.07475 * 179.97438 * 24 23 22 26 26 C 1.35767 * 126.58192 * 359.73899 * 25 24 23 27 27 N 1.34143 * 107.51667 * 179.89754 * 26 25 24 28 28 C 1.30361 * 108.89795 * 0.36597 * 27 26 25 29 29 O 1.33994 * 109.04005 * 359.77441 * 28 27 26 30 30 C 1.39310 * 120.07587 * 179.97438 * 20 18 17 31 31 H 1.09001 * 109.47157 * 296.09410 * 1 2 3 32 32 H 1.08999 * 109.47600 * 56.09598 * 1 2 3 33 33 H 1.08999 * 109.47294 * 176.09691 * 1 2 3 34 34 H 1.09005 * 110.41975 * 86.19979 * 4 2 1 35 35 H 1.08998 * 110.29700 * 324.00216 * 4 2 1 36 36 H 0.97006 * 119.99638 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.87848 * 239.52696 * 14 5 4 38 38 H 1.08996 * 110.00859 * 118.43042 * 14 5 4 39 39 H 0.97002 * 119.99861 * 91.16800 * 17 15 14 40 40 H 1.07998 * 119.92794 * 359.70159 * 21 20 18 41 41 H 1.08001 * 119.84551 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.92621 * 180.02562 * 23 22 21 43 43 H 1.07996 * 126.23816 * 0.03196 * 26 25 24 44 44 H 1.08008 * 125.47957 * 179.74790 * 28 27 26 45 45 H 1.08001 * 120.14642 * 0.04814 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4297 -1.2473 -0.7707 6 6 4.4679 -1.5727 -1.6024 7 1 4.3396 -1.5172 -2.6733 8 6 5.6851 -1.9737 -1.0690 9 7 5.8415 -2.0408 0.2361 10 14 7.1009 -2.4181 -2.2036 11 1 6.6710 -2.2617 -3.6164 12 1 8.2522 -1.5198 -1.9338 13 1 7.5049 -3.8267 -1.9627 14 6 3.4671 -1.2781 0.6988 15 6 2.0861 -0.8079 1.2021 16 1 1.4451 -1.6615 1.4229 17 7 2.2287 0.0495 2.3815 18 6 2.2499 -0.4969 3.6133 19 8 2.1513 -1.7012 3.7458 20 6 2.3933 0.3685 4.8036 21 6 2.5074 1.7525 4.6531 22 6 2.6408 2.5620 5.7635 23 6 2.6618 2.0105 7.0294 24 6 2.5487 0.6284 7.1942 25 6 2.5721 0.0396 8.5501 26 6 2.7018 0.7123 9.7222 27 7 2.6725 -0.1923 10.7123 28 6 2.5391 -1.3811 10.1942 29 8 2.4742 -1.2719 8.8603 30 6 2.4149 -0.1946 6.0777 31 1 -0.3633 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0700 34 1 2.1641 -0.1732 -2.0838 35 1 1.4552 -1.6694 -1.4053 36 1 6.6923 -2.3208 0.6088 37 1 4.2434 -0.6057 1.0640 38 1 3.6624 -2.2928 1.0457 39 1 2.3078 1.0105 2.2757 40 1 2.4956 2.1899 3.6657 41 1 2.7290 3.6315 5.6415 42 1 2.7660 2.6495 7.8938 43 1 2.8069 1.7810 9.8367 44 1 2.4893 -2.3055 10.7507 45 1 2.3278 -1.2642 6.1995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080706231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:27 Heat of formation + Delta-G solvation = 17.272331 kcal Electronic energy + Delta-G solvation = -28619.036126 eV Core-core repulsion = 24602.872766 eV Total energy + Delta-G solvation = -4016.163360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.30834 -41.41244 -39.87333 -38.85167 -35.83128 -35.74496 -34.53204 -33.53224 -32.27956 -32.14413 -30.01658 -29.22453 -27.39846 -25.85535 -24.96788 -24.50164 -23.43527 -22.44185 -22.12751 -21.60228 -20.95575 -19.39026 -18.90913 -18.20451 -17.63557 -17.62059 -17.06558 -16.93335 -16.47053 -16.09714 -15.91189 -15.56505 -15.31873 -15.01956 -14.80190 -14.74838 -14.43306 -14.14383 -14.08680 -13.93077 -13.64558 -13.35046 -13.05561 -12.91511 -12.79050 -12.63161 -12.47548 -12.43915 -12.15857 -12.07160 -11.87869 -11.70621 -11.66138 -11.48187 -11.06678 -11.02217 -10.78117 -10.21689 -9.96812 -9.18205 -8.94899 -7.86563 -5.24748 -0.49767 -0.11188 0.85166 1.43049 1.45135 1.55504 1.63769 1.70360 1.87712 2.06358 2.47767 2.80997 3.31822 3.32606 3.43042 3.57268 3.65634 3.76112 3.84677 3.97144 4.03048 4.05692 4.09579 4.13779 4.29172 4.43495 4.53004 4.61065 4.71214 4.73708 4.83623 4.87833 4.88166 5.05074 5.07037 5.15932 5.23826 5.27365 5.28562 5.29306 5.33204 5.43538 5.48761 5.58684 5.73497 5.76596 6.14358 6.50963 6.63167 7.03904 7.18078 7.73662 8.37386 9.22718 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.002511 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.095729 B =11148.642620 C =12175.389347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 H 0.097 0.903 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.239 4.239 7 H 0.090 0.910 8 C -0.072 4.072 9 N -0.954 5.954 10 Si 0.981 3.019 11 H -0.259 1.259 12 H -0.291 1.291 13 H -0.298 1.298 14 C 0.189 3.811 15 C 0.135 3.865 16 H 0.072 0.928 17 N -0.692 5.692 18 C 0.549 3.451 19 O -0.587 6.587 20 C -0.142 4.142 21 C -0.072 4.072 22 C -0.106 4.106 23 C -0.061 4.061 24 C -0.035 4.035 25 C -0.025 4.025 26 C -0.016 4.016 27 N -0.516 5.516 28 C 0.183 3.817 29 O -0.219 6.219 30 C -0.066 4.066 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.024 0.976 36 H 0.243 0.757 37 H 0.019 0.981 38 H -0.013 1.013 39 H 0.414 0.586 40 H 0.156 0.844 41 H 0.183 0.817 42 H 0.173 0.827 43 H 0.218 0.782 44 H 0.291 0.709 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.494 14.508 15.726 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.115 0.885 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.368 4.368 7 H 0.108 0.892 8 C -0.265 4.265 9 N -0.603 5.603 10 Si 0.809 3.191 11 H -0.183 1.183 12 H -0.218 1.218 13 H -0.225 1.225 14 C 0.062 3.938 15 C 0.029 3.971 16 H 0.090 0.910 17 N -0.343 5.343 18 C 0.338 3.662 19 O -0.468 6.468 20 C -0.145 4.145 21 C -0.090 4.090 22 C -0.123 4.123 23 C -0.079 4.079 24 C -0.036 4.036 25 C -0.078 4.078 26 C -0.155 4.155 27 N -0.244 5.244 28 C -0.041 4.041 29 O -0.106 6.106 30 C -0.085 4.085 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.005 0.995 39 H 0.253 0.747 40 H 0.173 0.827 41 H 0.200 0.800 42 H 0.190 0.810 43 H 0.234 0.766 44 H 0.306 0.694 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.344 13.670 16.389 24.169 hybrid contribution 1.244 -1.235 -1.125 2.083 sum -10.100 12.434 15.264 22.128 Atomic orbital electron populations 1.21659 0.91620 1.02252 1.03170 1.22582 0.97309 0.99031 0.92232 0.88480 1.21906 0.85139 0.95814 0.96485 1.44739 1.09711 1.79093 1.01898 1.19562 0.90032 1.37289 0.89885 0.89188 1.25757 1.00837 1.02466 0.97427 1.70259 1.24176 1.54733 1.11109 0.84966 0.78859 0.76679 0.78571 1.18331 1.21762 1.22507 1.21091 0.92643 0.96439 0.83631 1.22106 0.96556 0.93653 0.84829 0.91028 1.45612 1.73026 1.11150 1.04482 1.18812 0.75600 0.87501 0.84296 1.90759 1.51888 1.17115 1.87064 1.19756 1.07841 0.95003 0.91946 1.21810 0.94739 0.90637 1.01818 1.21503 0.98338 1.02225 0.90265 1.21688 0.94710 0.91415 1.00055 1.17688 1.05125 0.94157 0.86614 1.21634 1.09196 0.80905 0.96046 1.23773 1.03899 1.02066 0.85778 1.70408 1.19235 1.00501 1.34266 1.29191 0.97663 1.00534 0.76741 1.84540 1.69401 1.28026 1.28648 1.21241 0.95940 0.99904 0.91441 0.91283 0.90042 0.93241 0.92311 0.95809 0.94763 0.96313 0.99514 0.74736 0.82680 0.80021 0.80994 0.76592 0.69375 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.32 71.98 0.67 -2.26 16 2 C -0.09 -2.82 3.27 -9.33 -0.03 -2.85 16 3 H 0.10 2.65 8.01 -2.38 -0.02 2.63 16 4 C 0.13 5.17 6.72 86.93 0.58 5.75 16 5 N -0.63 -32.92 3.40 -691.56 -2.35 -35.27 16 6 C -0.24 -13.59 10.28 84.03 0.86 -12.73 16 7 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 8 C -0.07 -4.26 5.49 84.86 0.47 -3.79 16 9 N -0.95 -60.54 10.31 21.65 0.22 -60.32 16 10 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 11 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 14 C 0.19 9.94 5.13 86.73 0.44 10.38 16 15 C 0.13 5.25 2.74 46.18 0.13 5.38 16 16 H 0.07 3.07 7.52 -2.38 -0.02 3.05 16 17 N -0.69 -22.37 5.07 -439.75 -2.23 -24.59 16 18 C 0.55 20.03 7.77 86.79 0.67 20.70 16 19 O -0.59 -27.52 16.03 -3.89 -0.06 -27.59 16 20 C -0.14 -3.96 5.87 -20.12 -0.12 -4.08 16 21 C -0.07 -1.27 9.54 22.58 0.22 -1.06 16 22 C -0.11 -1.23 10.02 22.19 0.22 -1.01 16 23 C -0.06 -0.80 9.57 22.58 0.22 -0.59 16 24 C -0.04 -0.76 5.87 -20.13 -0.12 -0.88 16 25 C -0.03 -0.55 7.07 24.24 0.17 -0.38 16 26 C -0.02 -0.29 11.29 83.77 0.95 0.66 16 27 N -0.52 -10.27 11.27 -315.08 -3.55 -13.82 16 28 C 0.18 3.08 13.22 130.46 1.72 4.80 16 29 O -0.22 -5.13 10.59 -7.76 -0.08 -5.21 16 30 C -0.07 -1.89 9.27 22.80 0.21 -1.68 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.21 8.08 -2.39 -0.02 1.19 16 34 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.02 0.94 7.99 -2.39 -0.02 0.92 16 36 H 0.24 15.12 8.31 -92.70 -0.77 14.35 16 37 H 0.02 1.09 7.27 -2.39 -0.02 1.07 16 38 H -0.01 -0.86 7.51 -2.39 -0.02 -0.88 16 39 H 0.41 9.85 6.56 -92.71 -0.61 9.24 16 40 H 0.16 1.94 6.39 -2.91 -0.02 1.92 16 41 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 42 H 0.17 0.91 7.02 -2.91 -0.02 0.89 16 43 H 0.22 2.11 7.29 -2.91 -0.02 2.09 16 44 H 0.29 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.11 3.73 7.53 -2.91 -0.02 3.71 16 Total: -1.00 -88.53 377.77 1.67 -86.86 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.42 Total: 14.55 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 7.27 Total: 16.37 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -7.90 Total: -134.00 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.14 Total: -32.80 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -88.53 1.67 -86.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080706231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.132 kcal (2) G-P(sol) polarization free energy of solvation -88.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds