Wall clock time and date at job start Wed Apr 1 2020 00:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.87515 * 2 1 4 4 C 1.54419 * 110.00586 * 238.90878 * 2 1 3 5 5 H 1.09003 * 110.72673 * 336.66499 * 4 2 1 6 6 N 1.46502 * 110.76005 * 99.96545 * 4 2 1 7 7 C 1.34784 * 120.00058 * 199.94376 * 6 4 2 8 8 O 1.21641 * 119.99759 * 359.97438 * 7 6 4 9 9 C 1.47143 * 119.99909 * 180.02562 * 7 6 4 10 10 C 1.39037 * 121.10107 * 359.71733 * 9 7 6 11 11 N 1.32081 * 121.41124 * 179.70006 * 10 9 7 12 12 C 1.31824 * 123.59027 * 0.60600 * 11 10 9 13 13 O 1.35257 * 119.60624 * 179.71782 * 12 11 10 14 14 C 1.41174 * 120.78234 * 359.69206 * 12 11 10 15 15 C 1.40130 * 122.10637 * 179.97438 * 14 12 11 16 16 C 1.36353 * 119.50589 * 180.02562 * 15 14 12 17 17 C 1.39182 * 121.05721 * 359.97438 * 16 15 14 18 18 C 1.36515 * 120.89413 * 0.02562 * 17 16 15 19 19 C 1.39620 * 119.43666 * 359.97438 * 18 17 16 20 20 C 1.55158 * 102.89630 * 218.32008 * 4 2 1 21 21 C 1.54914 * 101.61377 * 35.50284 * 20 4 2 22 22 N 1.47023 * 109.88265 * 121.01573 * 2 1 3 23 23 C 1.36940 * 125.64842 * 298.47690 * 22 2 1 24 24 H 1.07997 * 119.99801 * 349.86576 * 23 22 2 25 25 C 1.38817 * 119.99970 * 169.86600 * 23 22 2 26 26 N 1.31618 * 119.99610 * 350.47893 * 25 23 22 27 27 Si 1.86791 * 119.99937 * 170.47910 * 25 23 22 28 28 H 1.48502 * 109.47028 * 94.13766 * 27 25 23 29 29 H 1.48497 * 109.47230 * 214.13656 * 27 25 23 30 30 H 1.48506 * 109.47338 * 334.13707 * 27 25 23 31 31 H 1.09002 * 109.46837 * 300.43663 * 1 2 3 32 32 H 1.08991 * 109.47415 * 60.43330 * 1 2 3 33 33 H 1.08998 * 109.47095 * 180.44213 * 1 2 3 34 34 H 0.97005 * 120.00212 * 19.94367 * 6 4 2 35 35 H 1.07998 * 119.29553 * 359.97438 * 10 9 7 36 36 H 0.96701 * 113.99870 * 269.97299 * 13 12 11 37 37 H 1.08002 * 120.24722 * 0.02562 * 15 14 12 38 38 H 1.08001 * 119.47255 * 180.02562 * 16 15 14 39 39 H 1.07992 * 119.55558 * 179.97438 * 17 16 15 40 40 H 1.07996 * 120.28488 * 180.02562 * 18 17 16 41 41 H 1.08997 * 111.00685 * 277.40746 * 20 4 2 42 42 H 1.09000 * 111.00155 * 153.59524 * 20 4 2 43 43 H 1.08994 * 110.36624 * 81.81233 * 21 20 4 44 44 H 1.08998 * 110.36103 * 204.13060 * 21 20 4 45 45 H 0.97000 * 119.99533 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0583 -0.7493 -1.2426 5 1 1.3107 -1.4477 -1.6187 6 7 2.4587 0.1960 -2.2877 7 6 2.5622 -0.2172 -3.5665 8 8 2.3236 -1.3751 -3.8526 9 6 2.9650 0.7321 -4.6161 10 6 3.2384 2.0618 -4.3154 11 7 3.6061 2.9178 -5.2517 12 6 3.7315 2.5973 -6.5242 13 8 4.1081 3.5410 -7.4170 14 6 3.4778 1.2807 -6.9661 15 6 3.6020 0.9098 -8.3117 16 6 3.3433 -0.3773 -8.6802 17 6 2.9582 -1.3295 -7.7409 18 6 2.8280 -1.0007 -6.4223 19 6 3.0858 0.3090 -6.0130 20 6 3.2918 -1.5108 -0.6893 21 6 2.8176 -1.8763 0.7395 22 7 2.0301 -0.7124 1.1849 23 6 1.8025 -0.3538 2.4868 24 1 1.3538 0.6021 2.7130 25 6 2.1487 -1.2190 3.5157 26 7 2.5190 -2.4520 3.2420 27 14 2.0888 -0.6334 5.2884 28 1 0.7754 -0.9890 5.8831 29 1 3.1755 -1.2857 6.0622 30 1 2.2680 0.8403 5.3292 31 1 -0.3633 0.5206 0.8861 32 1 -0.3634 0.5070 -0.8937 33 1 -0.3633 -1.0276 0.0079 34 1 2.6494 1.1193 -2.0595 35 1 3.1527 2.4009 -3.2936 36 1 3.3702 4.0244 -7.8131 37 1 3.9003 1.6380 -9.0514 38 1 3.4396 -0.6627 -9.7173 39 1 2.7589 -2.3419 -8.0596 40 1 2.5290 -1.7475 -5.7018 41 1 4.1682 -0.8635 -0.6565 42 1 3.4927 -2.4074 -1.2757 43 1 2.1937 -2.7697 0.7151 44 1 3.6742 -2.0286 1.3960 45 1 2.7612 -3.0565 3.9610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088899896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:40 Heat of formation + Delta-G solvation = 14.442752 kcal Electronic energy + Delta-G solvation = -29068.498508 eV Core-core repulsion = 25052.212448 eV Total energy + Delta-G solvation = -4016.286060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.33984 -39.65300 -38.29894 -37.60752 -36.97525 -34.17545 -32.45601 -32.00687 -31.50137 -30.44863 -29.88744 -28.44477 -25.44973 -24.36457 -24.00692 -23.92926 -22.77129 -21.06264 -20.29156 -19.83598 -19.26599 -18.07141 -17.80752 -17.31606 -16.76382 -16.07984 -15.90484 -15.31796 -15.00056 -14.83980 -14.58984 -14.48583 -14.07069 -13.82928 -13.61261 -13.44579 -13.19816 -12.81053 -12.41745 -12.28746 -12.27095 -12.14105 -12.09238 -11.72436 -11.58195 -11.13863 -10.96326 -10.78175 -10.61447 -10.42470 -10.21636 -10.10732 -10.03932 -9.87507 -9.67043 -9.48541 -9.45701 -8.82327 -8.60525 -8.30772 -6.86727 -5.77254 -3.10938 -0.30902 0.53808 1.35792 2.42154 3.05953 3.09394 3.12588 3.37980 3.44125 3.45797 3.73601 4.11086 4.24881 4.36272 4.47222 4.52985 4.71258 4.77735 4.93396 5.09003 5.17269 5.31792 5.36375 5.40258 5.47017 5.55770 5.60912 5.76930 5.78470 5.96597 6.08588 6.12007 6.15992 6.22493 6.28382 6.31357 6.45425 6.55437 6.59059 6.66049 6.85546 6.99048 7.06830 7.47216 7.48257 7.53856 7.59720 7.75878 8.20771 8.25003 9.15469 9.77448 10.43740 11.35422 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.002406 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.604806 B =11635.296365 C =12356.348320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.137 3.863 5 H 0.096 0.904 6 N -0.706 5.706 7 C 0.568 3.432 8 O -0.534 6.534 9 C -0.179 4.179 10 C 0.146 3.854 11 N -0.515 5.515 12 C 0.380 3.620 13 O -0.475 6.475 14 C -0.130 4.130 15 C -0.084 4.084 16 C -0.120 4.120 17 C -0.094 4.094 18 C -0.110 4.110 19 C 0.023 3.977 20 C -0.155 4.155 21 C 0.174 3.826 22 N -0.593 5.593 23 C -0.228 4.228 24 H 0.076 0.924 25 C -0.006 4.006 26 N -0.916 5.916 27 Si 0.910 3.090 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.281 1.281 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.397 0.603 35 H 0.165 0.835 36 H 0.407 0.593 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.170 0.830 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.030 0.970 44 H 0.072 0.928 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 7.837 -24.565 25.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.032 3.968 5 H 0.114 0.886 6 N -0.356 5.356 7 C 0.354 3.646 8 O -0.413 6.413 9 C -0.184 4.184 10 C 0.001 3.999 11 N -0.234 5.234 12 C 0.188 3.812 13 O -0.284 6.284 14 C -0.133 4.133 15 C -0.104 4.104 16 C -0.138 4.138 17 C -0.113 4.113 18 C -0.127 4.127 19 C 0.018 3.982 20 C -0.194 4.194 21 C 0.049 3.951 22 N -0.319 5.319 23 C -0.356 4.356 24 H 0.094 0.906 25 C -0.202 4.202 26 N -0.563 5.563 27 Si 0.740 3.260 28 H -0.216 1.216 29 H -0.216 1.216 30 H -0.206 1.206 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.233 0.767 35 H 0.182 0.818 36 H 0.267 0.733 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.187 0.813 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.279 7.560 -24.056 25.248 hybrid contribution -0.508 0.174 0.706 0.887 sum 0.771 7.734 -23.349 24.609 Atomic orbital electron populations 1.22236 0.97728 1.01525 0.99960 1.21030 0.92639 0.94816 0.86815 0.94665 1.22208 0.97635 0.90720 0.86197 0.88623 1.46014 1.68638 1.14119 1.06867 1.17613 0.77662 0.87173 0.82115 1.90637 1.50602 1.18539 1.81502 1.21955 1.07351 0.95413 0.93710 1.22509 0.91868 0.87719 0.97852 1.66580 1.15626 1.39656 1.01552 1.19403 0.89002 0.86254 0.86557 1.84621 1.36172 1.51839 1.55731 1.18901 1.05068 0.94021 0.95335 1.20884 0.98459 0.97068 0.93986 1.21019 0.99385 0.93237 1.00164 1.21239 0.97023 0.99952 0.93132 1.21876 0.97549 0.96016 0.97271 1.18802 0.95157 0.93823 0.90421 1.23408 0.96724 0.99561 0.99724 1.21413 0.95625 0.89454 0.88616 1.44485 1.58200 1.29124 1.00078 1.18952 1.36314 0.99953 0.80381 0.90599 1.24828 1.02024 0.95386 0.98008 1.69956 1.51025 1.04394 1.30884 0.86142 0.77278 0.77866 0.84676 1.21626 1.21630 1.20608 0.92550 0.94435 0.92852 0.76732 0.81849 0.73338 0.84563 0.85362 0.85134 0.81286 0.91957 0.91678 0.95243 0.90994 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.15 37.16 0.34 -2.48 16 2 C 0.16 3.00 3.47 -66.90 -0.23 2.76 16 3 H 0.04 0.66 7.69 -51.93 -0.40 0.26 16 4 C 0.14 2.37 2.76 -66.04 -0.18 2.19 16 5 H 0.10 1.77 7.42 -51.93 -0.39 1.39 16 6 N -0.71 -9.93 5.16 -53.14 -0.27 -10.20 16 7 C 0.57 8.29 7.76 -12.64 -0.10 8.19 16 8 O -0.53 -9.14 13.45 5.24 0.07 -9.07 16 9 C -0.18 -2.27 6.06 -102.68 -0.62 -2.89 16 10 C 0.15 1.64 10.70 -17.15 -0.18 1.46 16 11 N -0.52 -6.09 10.25 -12.66 -0.13 -6.22 16 12 C 0.38 3.99 7.79 -16.44 -0.13 3.86 16 13 O -0.48 -3.71 12.80 -17.47 -0.22 -3.93 16 14 C -0.13 -1.37 5.75 -106.77 -0.61 -1.99 16 15 C -0.08 -0.69 9.58 -39.55 -0.38 -1.06 16 16 C -0.12 -0.91 9.95 -39.91 -0.40 -1.31 16 17 C -0.09 -0.85 9.96 -39.85 -0.40 -1.24 16 18 C -0.11 -1.30 9.32 -39.69 -0.37 -1.67 16 19 C 0.02 0.29 5.90 -104.77 -0.62 -0.33 16 20 C -0.15 -2.95 6.76 -24.58 -0.17 -3.11 16 21 C 0.17 4.13 5.42 -2.53 -0.01 4.11 16 22 N -0.59 -14.42 3.13 -162.52 -0.51 -14.92 16 23 C -0.23 -6.10 9.83 -15.06 -0.15 -6.24 16 24 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 25 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 26 N -0.92 -26.42 10.69 55.49 0.59 -25.83 16 27 Si 0.91 21.67 29.56 -169.99 -5.03 16.65 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 31 H 0.06 1.07 8.02 -51.93 -0.42 0.65 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 4.59 6.40 -40.82 -0.26 4.32 16 35 H 0.16 1.45 6.42 -52.49 -0.34 1.11 16 36 H 0.41 1.02 9.06 45.56 0.41 1.43 16 37 H 0.14 0.77 7.66 -52.49 -0.40 0.37 16 38 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.17 2.28 5.23 -52.49 -0.27 2.00 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 44 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -33.34 369.69 -9.16 -42.50 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.93 Total: 5.46 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -4.30 Total: -0.01 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.32 Total: -57.17 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.15 Total: -13.00 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.34 -9.16 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088899896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.939 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds