Wall clock time and date at job start Wed Apr 1 2020 01:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46695 * 2 1 4 4 N 1.46499 * 109.47152 * 239.99854 * 2 1 3 5 5 C 1.34775 * 119.99934 * 84.99836 * 4 2 1 6 6 O 1.21582 * 119.99786 * 0.02562 * 5 4 2 7 7 N 1.34769 * 119.99995 * 179.97438 * 5 4 2 8 8 C 1.39244 * 120.00084 * 185.14828 * 7 5 4 9 9 C 1.39687 * 119.57945 * 174.62289 * 8 7 5 10 10 C 1.38641 * 119.50021 * 180.02562 * 9 8 7 11 11 C 1.38356 * 118.66970 * 359.97438 * 10 9 8 12 12 C 1.40570 * 119.13166 * 0.02562 * 11 10 9 13 13 C 1.41331 * 119.78983 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99562 * 0.02562 * 13 12 11 15 15 C 1.40019 * 120.00182 * 179.97438 * 13 12 11 16 16 N 1.30743 * 120.00045 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 120.00035 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47041 * 60.00086 * 17 15 13 19 19 H 1.48499 * 109.46960 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46902 * 300.00522 * 17 15 13 21 21 N 1.31905 * 119.57569 * 354.35859 * 8 7 5 22 22 C 1.52998 * 109.46855 * 119.99740 * 2 1 3 23 23 H 1.08996 * 109.47542 * 300.00060 * 22 2 1 24 24 O 1.42902 * 109.47229 * 60.00413 * 22 2 1 25 25 C 1.50695 * 109.47060 * 180.02562 * 22 2 1 26 26 C 1.38236 * 120.00167 * 279.72972 * 25 22 2 27 27 C 1.38239 * 119.99979 * 179.80689 * 26 25 22 28 28 C 1.38235 * 119.99759 * 0.40077 * 27 26 25 29 29 C 1.38231 * 120.00445 * 359.84959 * 28 27 26 30 30 C 1.38237 * 119.99987 * 100.00183 * 25 22 2 31 31 H 1.08996 * 109.47095 * 299.99926 * 1 2 3 32 32 H 1.09002 * 109.47281 * 59.99989 * 1 2 3 33 33 H 1.09004 * 109.47103 * 179.97438 * 1 2 3 34 34 H 0.96996 * 119.99533 * 265.00255 * 4 2 1 35 35 H 0.97003 * 120.00376 * 5.15637 * 7 5 4 36 36 H 1.08003 * 120.24563 * 359.97438 * 9 8 7 37 37 H 1.08001 * 120.66876 * 180.02562 * 10 9 8 38 38 H 1.07999 * 120.43112 * 179.97438 * 11 10 9 39 39 H 0.97008 * 119.99983 * 180.02562 * 16 15 13 40 40 H 0.96697 * 114.00348 * 59.99489 * 24 22 2 41 41 H 1.07998 * 120.00050 * 359.97438 * 26 25 22 42 42 H 1.07998 * 119.99788 * 180.23215 * 27 26 25 43 43 H 1.08001 * 119.99493 * 179.83693 * 28 27 26 44 44 H 1.08000 * 120.00273 * 179.97438 * 29 28 27 45 45 H 1.08004 * 119.99980 * 359.97438 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1615 -2.4116 7 7 2.5968 -0.6535 -3.4574 8 6 2.8318 0.0631 -4.6279 9 6 3.4036 -0.5809 -5.7276 10 6 3.6374 0.1344 -6.8921 11 6 3.2936 1.4741 -6.9285 12 6 2.7212 2.0649 -5.7886 13 6 2.3652 3.4325 -5.8104 14 1 2.5328 4.0200 -6.7011 15 6 1.7943 4.0254 -4.6776 16 7 1.5911 3.3141 -3.5996 17 14 1.3245 5.8332 -4.7062 18 1 0.3227 6.0674 -5.7771 19 1 0.7447 6.2147 -3.3933 20 1 2.5330 6.6546 -4.9707 21 7 2.5067 1.3402 -4.6857 22 6 2.0400 -0.7212 1.2493 23 1 1.6767 -0.2074 2.1392 24 8 1.5637 -2.0685 1.2493 25 6 3.5469 -0.7207 1.2496 26 6 4.2386 -1.6410 0.4845 27 6 5.6210 -1.6379 0.4818 28 6 6.3116 -0.7198 1.2506 29 6 5.6200 0.1972 2.0197 30 6 4.2376 0.1966 2.0195 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6318 -1.1525 35 1 2.7567 -1.6100 -3.4340 36 1 3.6625 -1.6279 -5.6709 37 1 4.0782 -0.3447 -7.7538 38 1 3.4635 2.0583 -7.8208 39 1 1.1952 3.7248 -2.8150 40 1 1.8490 -2.5866 0.4843 41 1 3.6991 -2.3607 -0.1132 42 1 6.1614 -2.3546 -0.1189 43 1 7.3916 -0.7192 1.2505 44 1 6.1596 0.9142 2.6207 45 1 3.6972 0.9131 2.6203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434745407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:03 Heat of formation + Delta-G solvation = 12.889095 kcal Electronic energy + Delta-G solvation = -29979.483867 eV Core-core repulsion = 25963.130436 eV Total energy + Delta-G solvation = -4016.353431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.31356 -39.19649 -37.93026 -37.08397 -34.42165 -33.75510 -32.96431 -31.68427 -30.97179 -30.43874 -30.17390 -28.59449 -26.15149 -25.48413 -22.99419 -22.57625 -21.74794 -21.25901 -20.60355 -19.81095 -18.28892 -17.79807 -17.24896 -16.50331 -15.94277 -15.78297 -15.26987 -14.81182 -14.65376 -14.43537 -14.29902 -14.24689 -13.65675 -13.59974 -13.40967 -13.20240 -12.97747 -12.81216 -12.52920 -12.17962 -11.98152 -11.92362 -11.85845 -11.53915 -11.20666 -11.11902 -10.94305 -10.90281 -10.63125 -10.43099 -10.19121 -9.91823 -9.66701 -9.09924 -9.02765 -8.98739 -8.83366 -8.48037 -7.91971 -7.17957 -6.91324 -6.07720 -4.35796 1.22575 1.31074 2.88035 3.15826 3.18270 3.18617 3.20511 3.30463 3.64938 4.09553 4.18640 4.27141 4.40951 4.68031 4.72061 4.80945 4.89154 4.98502 5.00170 5.23872 5.35817 5.45882 5.53719 5.61101 5.83291 5.88860 5.91164 6.07437 6.09816 6.17753 6.33301 6.40440 6.43067 6.46062 6.50262 6.63053 6.81980 6.87702 6.87985 6.95064 7.25561 7.32317 7.36216 7.64867 7.75838 7.84628 8.19988 8.32101 8.67202 8.83055 9.09549 9.61857 10.30385 10.52986 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.003743 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.762935 B = 7479.293570 C = 8182.376166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.097 0.903 4 N -0.753 5.753 5 C 0.667 3.333 6 O -0.458 6.458 7 N -0.673 5.673 8 C 0.387 3.613 9 C -0.359 4.359 10 C -0.036 4.036 11 C -0.308 4.308 12 C 0.271 3.729 13 C -0.426 4.426 14 H 0.081 0.919 15 C 0.057 3.943 16 N -0.647 5.647 17 Si 0.894 3.106 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.268 1.268 21 N -0.470 5.470 22 C 0.141 3.859 23 H 0.118 0.882 24 O -0.549 6.549 25 C -0.109 4.109 26 C -0.103 4.103 27 C -0.115 4.115 28 C -0.121 4.121 29 C -0.117 4.117 30 C -0.109 4.109 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.375 0.625 35 H 0.393 0.607 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.272 0.728 40 H 0.369 0.631 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.181 -9.761 12.732 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.115 0.885 4 N -0.414 5.414 5 C 0.365 3.635 6 O -0.322 6.322 7 N -0.321 5.321 8 C 0.147 3.853 9 C -0.385 4.385 10 C -0.060 4.060 11 C -0.331 4.331 12 C 0.146 3.854 13 C -0.456 4.456 14 H 0.099 0.901 15 C -0.173 4.173 16 N -0.266 5.266 17 Si 0.718 3.282 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.193 1.193 21 N -0.188 5.188 22 C 0.081 3.919 23 H 0.136 0.864 24 O -0.354 6.354 25 C -0.109 4.109 26 C -0.122 4.122 27 C -0.133 4.133 28 C -0.139 4.139 29 C -0.136 4.136 30 C -0.127 4.127 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.208 0.792 35 H 0.225 0.775 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.217 0.783 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.138 -7.930 14.241 16.440 hybrid contribution 0.802 -0.798 -1.329 1.745 sum 2.940 -8.728 12.913 15.860 Atomic orbital electron populations 1.22102 0.94818 1.02163 1.02524 1.21282 0.94343 0.97962 0.82888 0.88487 1.45335 1.74138 1.12541 1.09407 1.16376 0.80733 0.86417 0.79972 1.91388 1.48310 1.10901 1.81592 1.42537 1.69318 1.10296 1.09956 1.18334 0.92498 0.91007 0.83431 1.20425 1.22363 0.99350 0.96358 1.20533 0.96056 0.94029 0.95367 1.21613 1.15303 0.95494 1.00661 1.18377 0.88089 0.93042 0.85854 1.19532 1.33865 0.93329 0.98888 0.90099 1.26175 0.96146 0.99141 0.95791 1.70339 1.21625 1.34399 1.00215 0.86624 0.79570 0.83820 0.78181 1.19222 1.20448 1.19250 1.68694 1.22359 1.01883 1.25892 1.21252 0.88418 0.83466 0.98733 0.86428 1.86632 1.76500 1.23068 1.49217 1.20436 0.96207 0.96752 0.97532 1.20745 0.94346 0.98624 0.98438 1.21099 0.94186 0.99074 0.98968 1.21154 0.99899 0.95765 0.97048 1.21124 0.94261 0.98758 0.99409 1.20967 0.94414 0.98324 0.99005 0.92266 0.91352 0.92330 0.79196 0.77458 0.89267 0.88708 0.88664 0.91657 0.78306 0.86864 0.86035 0.86188 0.86063 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.34 37.16 0.35 -1.71 16 2 C 0.14 1.87 2.40 -67.93 -0.16 1.70 16 3 H 0.10 1.56 7.58 -51.93 -0.39 1.17 16 4 N -0.75 -10.51 4.19 -58.68 -0.25 -10.76 16 5 C 0.67 13.29 8.49 -86.93 -0.74 12.55 16 6 O -0.46 -11.46 11.77 5.29 0.06 -11.39 16 7 N -0.67 -13.15 5.39 -15.79 -0.09 -13.23 16 8 C 0.39 9.47 7.43 -155.00 -1.15 8.32 16 9 C -0.36 -8.09 9.95 -38.89 -0.39 -8.48 16 10 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 11 C -0.31 -7.83 9.83 -38.66 -0.38 -8.21 16 12 C 0.27 7.70 6.55 -85.00 -0.56 7.14 16 13 C -0.43 -11.84 9.14 -37.74 -0.34 -12.18 16 14 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 15 C 0.06 1.52 5.50 -17.35 -0.10 1.42 16 16 N -0.65 -18.04 8.98 55.55 0.50 -17.54 16 17 Si 0.89 19.46 29.56 -169.99 -5.02 14.43 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 N -0.47 -13.24 5.74 -10.26 -0.06 -13.30 16 22 C 0.14 1.49 3.08 -27.89 -0.09 1.41 16 23 H 0.12 1.12 8.00 -51.93 -0.42 0.71 16 24 O -0.55 -5.56 12.51 -35.23 -0.44 -6.00 16 25 C -0.11 -1.23 4.88 -104.63 -0.51 -1.74 16 26 C -0.10 -1.12 8.32 -39.58 -0.33 -1.44 16 27 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 28 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 29 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 30 C -0.11 -1.22 9.67 -39.58 -0.38 -1.60 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 34 H 0.37 3.97 5.49 -40.82 -0.22 3.75 16 35 H 0.39 5.87 8.72 -40.82 -0.36 5.51 16 36 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 40 H 0.37 2.83 6.12 45.56 0.28 3.11 16 41 H 0.11 0.96 5.51 -52.49 -0.29 0.67 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.14 8.04 -52.48 -0.42 0.72 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -34.44 372.22 -11.20 -45.64 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -5.15 Total: 15.58 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -6.37 Total: -9.04 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.11 Total: -54.83 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.38 Total: -17.40 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.44 -11.20 -45.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434745407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.530 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds