Wall clock time and date at job start Wed Apr 1 2020 01:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46695 * 2 1 4 4 N 1.46499 * 109.47152 * 239.99854 * 2 1 3 5 5 C 1.34775 * 119.99934 * 84.99836 * 4 2 1 6 6 O 1.21582 * 119.99786 * 0.02562 * 5 4 2 7 7 N 1.34769 * 119.99995 * 179.97438 * 5 4 2 8 8 C 1.39244 * 120.00084 * 185.14828 * 7 5 4 9 9 C 1.39687 * 119.57945 * 174.62289 * 8 7 5 10 10 C 1.38641 * 119.50021 * 180.02562 * 9 8 7 11 11 C 1.38356 * 118.66970 * 359.97438 * 10 9 8 12 12 C 1.40570 * 119.13166 * 0.02562 * 11 10 9 13 13 C 1.41331 * 119.78983 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99562 * 0.02562 * 13 12 11 15 15 C 1.40019 * 120.00182 * 179.97438 * 13 12 11 16 16 N 1.30743 * 120.00045 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 120.00035 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47041 * 60.00086 * 17 15 13 19 19 H 1.48499 * 109.46960 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46902 * 300.00522 * 17 15 13 21 21 N 1.31905 * 119.57569 * 354.35859 * 8 7 5 22 22 C 1.52998 * 109.46855 * 119.99740 * 2 1 3 23 23 H 1.08996 * 109.47542 * 300.00060 * 22 2 1 24 24 O 1.42902 * 109.47229 * 60.00413 * 22 2 1 25 25 C 1.50695 * 109.47060 * 180.02562 * 22 2 1 26 26 C 1.38236 * 120.00167 * 279.72972 * 25 22 2 27 27 C 1.38239 * 119.99979 * 179.80689 * 26 25 22 28 28 C 1.38235 * 119.99759 * 0.40077 * 27 26 25 29 29 C 1.38231 * 120.00445 * 359.84959 * 28 27 26 30 30 C 1.38237 * 119.99987 * 100.00183 * 25 22 2 31 31 H 1.08996 * 109.47095 * 299.99926 * 1 2 3 32 32 H 1.09002 * 109.47281 * 59.99989 * 1 2 3 33 33 H 1.09004 * 109.47103 * 179.97438 * 1 2 3 34 34 H 0.96996 * 119.99533 * 265.00255 * 4 2 1 35 35 H 0.97003 * 120.00376 * 5.15637 * 7 5 4 36 36 H 1.08003 * 120.24563 * 359.97438 * 9 8 7 37 37 H 1.08001 * 120.66876 * 180.02562 * 10 9 8 38 38 H 1.07999 * 120.43112 * 179.97438 * 11 10 9 39 39 H 0.97008 * 119.99983 * 180.02562 * 16 15 13 40 40 H 0.96697 * 114.00348 * 59.99489 * 24 22 2 41 41 H 1.07998 * 120.00050 * 359.97438 * 26 25 22 42 42 H 1.07998 * 119.99788 * 180.23215 * 27 26 25 43 43 H 1.08001 * 119.99493 * 179.83693 * 28 27 26 44 44 H 1.08000 * 120.00273 * 179.97438 * 29 28 27 45 45 H 1.08004 * 119.99980 * 359.97438 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1615 -2.4116 7 7 2.5968 -0.6535 -3.4574 8 6 2.8318 0.0631 -4.6279 9 6 3.4036 -0.5809 -5.7276 10 6 3.6374 0.1344 -6.8921 11 6 3.2936 1.4741 -6.9285 12 6 2.7212 2.0649 -5.7886 13 6 2.3652 3.4325 -5.8104 14 1 2.5328 4.0200 -6.7011 15 6 1.7943 4.0254 -4.6776 16 7 1.5911 3.3141 -3.5996 17 14 1.3245 5.8332 -4.7062 18 1 0.3227 6.0674 -5.7771 19 1 0.7447 6.2147 -3.3933 20 1 2.5330 6.6546 -4.9707 21 7 2.5067 1.3402 -4.6857 22 6 2.0400 -0.7212 1.2493 23 1 1.6767 -0.2074 2.1392 24 8 1.5637 -2.0685 1.2493 25 6 3.5469 -0.7207 1.2496 26 6 4.2386 -1.6410 0.4845 27 6 5.6210 -1.6379 0.4818 28 6 6.3116 -0.7198 1.2506 29 6 5.6200 0.1972 2.0197 30 6 4.2376 0.1966 2.0195 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6318 -1.1525 35 1 2.7567 -1.6100 -3.4340 36 1 3.6625 -1.6279 -5.6709 37 1 4.0782 -0.3447 -7.7538 38 1 3.4635 2.0583 -7.8208 39 1 1.1952 3.7248 -2.8150 40 1 1.8490 -2.5866 0.4843 41 1 3.6991 -2.3607 -0.1132 42 1 6.1614 -2.3546 -0.1189 43 1 7.3916 -0.7192 1.2505 44 1 6.1596 0.9142 2.6207 45 1 3.6972 0.9131 2.6203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434745407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:01 Heat of formation + Delta-G solvation = -9.402271 kcal Electronic energy + Delta-G solvation = -29980.450493 eV Core-core repulsion = 25963.130436 eV Total energy + Delta-G solvation = -4017.320058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.47522 -40.56027 -39.44708 -38.22234 -35.97534 -35.20869 -34.79964 -32.65893 -32.16939 -31.79059 -31.59208 -30.31031 -27.41881 -27.05594 -24.40467 -23.51428 -23.23548 -22.73246 -21.82918 -21.25419 -19.87274 -19.13036 -18.46516 -18.05284 -17.21185 -16.71568 -16.46111 -16.24212 -16.19182 -16.11497 -15.61729 -15.49055 -15.10434 -14.74595 -14.59723 -14.44420 -14.34781 -14.09041 -13.86434 -13.70443 -13.31957 -13.15338 -12.88100 -12.84759 -12.71641 -12.55044 -12.46396 -12.29573 -12.03952 -11.85061 -11.77474 -11.46806 -11.10406 -10.83776 -10.81007 -9.94581 -9.85001 -9.76347 -9.63848 -9.07583 -8.75280 -7.99812 -6.38581 0.39528 0.49630 1.00010 1.31251 1.39399 1.50585 1.54319 1.78844 2.27606 2.61837 2.81686 3.06778 3.29080 3.47072 3.55892 3.83998 3.92750 4.10304 4.11198 4.24490 4.34459 4.37944 4.43136 4.49894 4.61777 4.74073 4.76427 4.80448 4.86470 4.98865 5.03583 5.07857 5.09151 5.12647 5.29161 5.34555 5.52930 5.57530 5.60901 5.68874 5.73453 5.88288 5.94816 6.04584 6.09163 6.32504 6.44398 6.60482 6.84401 7.10128 7.27042 8.06501 8.41262 8.60480 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.003743 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.762935 B = 7479.293570 C = 8182.376166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.145 3.855 3 H 0.065 0.935 4 N -0.727 5.727 5 C 0.661 3.339 6 O -0.511 6.511 7 N -0.661 5.661 8 C 0.365 3.635 9 C -0.346 4.346 10 C -0.034 4.034 11 C -0.333 4.333 12 C 0.238 3.762 13 C -0.468 4.468 14 H 0.084 0.916 15 C 0.011 3.989 16 N -0.681 5.681 17 Si 0.970 3.030 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.262 1.262 21 N -0.504 5.504 22 C 0.159 3.841 23 H 0.132 0.868 24 O -0.550 6.550 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.129 4.129 28 C -0.133 4.133 29 C -0.131 4.131 30 C -0.126 4.126 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.396 0.604 35 H 0.416 0.584 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.268 0.732 40 H 0.380 0.620 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.719 -11.649 13.250 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.039 3.961 3 H 0.083 0.917 4 N -0.389 5.389 5 C 0.359 3.641 6 O -0.378 6.378 7 N -0.311 5.311 8 C 0.125 3.875 9 C -0.371 4.371 10 C -0.058 4.058 11 C -0.356 4.356 12 C 0.112 3.888 13 C -0.499 4.499 14 H 0.102 0.898 15 C -0.215 4.215 16 N -0.300 5.300 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.186 1.186 21 N -0.223 5.223 22 C 0.099 3.901 23 H 0.149 0.851 24 O -0.357 6.357 25 C -0.125 4.125 26 C -0.133 4.133 27 C -0.147 4.147 28 C -0.151 4.151 29 C -0.149 4.149 30 C -0.144 4.144 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.232 0.768 35 H 0.253 0.747 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.230 0.770 41 H 0.152 0.848 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.693 -9.922 14.782 18.006 hybrid contribution 0.721 -0.431 -1.495 1.715 sum 3.414 -10.353 13.287 17.187 Atomic orbital electron populations 1.22011 0.94525 1.02692 1.01545 1.21311 0.94454 0.96813 0.83564 0.91701 1.44968 1.72821 1.13282 1.07859 1.16638 0.80242 0.86114 0.81060 1.91383 1.50405 1.13433 1.82596 1.42362 1.68827 1.11204 1.08731 1.18842 0.92470 0.90682 0.85475 1.20908 1.19818 1.01172 0.95246 1.21008 0.94828 0.93066 0.96884 1.21790 1.16353 0.97126 1.00312 1.18858 0.88957 0.93885 0.87085 1.19850 1.36109 0.94091 0.99845 0.89836 1.26996 0.95660 1.03781 0.95035 1.70548 1.22671 1.36157 1.00597 0.85459 0.79321 0.77775 0.78310 1.18511 1.19902 1.18614 1.68661 1.23480 1.03746 1.26385 1.21052 0.88110 0.83546 0.97368 0.85077 1.86633 1.76477 1.22603 1.49947 1.20594 0.96490 0.97271 0.98125 1.21059 0.94731 0.98931 0.98537 1.21428 0.94531 0.99518 0.99228 1.21489 1.01009 0.95692 0.96892 1.21427 0.94446 0.99266 0.99776 1.21273 0.94962 0.98702 0.99416 0.90378 0.95215 0.90886 0.76769 0.74744 0.85067 0.84613 0.87981 0.92119 0.77014 0.84803 0.84342 0.84564 0.84511 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.34 71.98 0.67 -3.17 16 2 C 0.14 3.77 2.40 44.99 0.11 3.87 16 3 H 0.06 2.17 7.58 -2.39 -0.02 2.15 16 4 N -0.73 -19.69 4.19 -457.83 -1.92 -21.61 16 5 C 0.66 26.52 8.49 179.06 1.52 28.04 16 6 O -0.51 -26.61 11.77 -3.97 -0.05 -26.66 16 7 N -0.66 -25.18 5.39 -322.13 -1.74 -26.91 16 8 C 0.37 17.74 7.43 133.26 0.99 18.73 16 9 C -0.35 -14.74 9.95 22.72 0.23 -14.51 16 10 C -0.03 -1.47 10.15 22.39 0.23 -1.25 16 11 C -0.33 -17.05 9.83 22.87 0.22 -16.83 16 12 C 0.24 13.93 6.55 40.19 0.26 14.20 16 13 C -0.47 -27.16 9.14 23.46 0.21 -26.94 16 14 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 15 C 0.01 0.62 5.50 85.29 0.47 1.09 16 16 N -0.68 -39.83 8.98 21.84 0.20 -39.63 16 17 Si 0.97 41.48 29.56 68.60 2.03 43.51 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 N -0.50 -29.19 5.74 -186.37 -1.07 -30.26 16 22 C 0.16 3.10 3.08 29.85 0.09 3.19 16 23 H 0.13 2.25 8.00 -2.39 -0.02 2.23 16 24 O -0.55 -9.62 12.51 -148.98 -1.86 -11.49 16 25 C -0.12 -2.65 4.88 -19.87 -0.10 -2.74 16 26 C -0.11 -2.26 8.32 22.27 0.19 -2.07 16 27 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 28 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 29 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 30 C -0.13 -2.70 9.67 22.27 0.22 -2.49 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.65 7.68 -2.38 -0.02 1.63 16 34 H 0.40 7.47 5.49 -92.71 -0.51 6.96 16 35 H 0.42 11.34 8.72 -92.71 -0.81 10.54 16 36 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 39 H 0.27 14.89 8.29 -92.70 -0.77 14.13 16 40 H 0.38 4.60 6.12 -74.06 -0.45 4.15 16 41 H 0.13 1.89 5.51 -2.91 -0.02 1.87 16 42 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 44 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.13 2.41 8.04 -2.91 -0.02 2.39 16 Total: -1.00 -79.09 372.22 0.86 -78.23 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -0.72 Total: 43.00 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 5.98 Total: -8.18 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -4.53 Total: -118.42 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -1.91 Total: -38.15 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -79.09 0.86 -78.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434745407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.831 kcal (2) G-P(sol) polarization free energy of solvation -79.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds