Wall clock time and date at job start Wed Apr 1 2020 00:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46886 * 2 1 4 4 N 1.46498 * 109.47084 * 120.00532 * 2 1 3 5 5 C 1.36944 * 119.99700 * 274.99596 * 4 2 1 6 6 H 1.07995 * 120.00171 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99462 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00354 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99503 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46903 * 90.00121 * 9 7 5 11 11 H 1.48497 * 109.46701 * 209.99903 * 9 7 5 12 12 H 1.48497 * 109.46911 * 330.00081 * 9 7 5 13 13 C 1.50699 * 109.46764 * 240.00554 * 2 1 3 14 14 C 1.38234 * 120.00320 * 100.00287 * 13 2 1 15 15 C 1.38233 * 120.00150 * 180.02562 * 14 13 2 16 16 C 1.38231 * 119.99934 * 359.95588 * 15 14 13 17 17 C 1.50703 * 120.00146 * 180.02562 * 16 15 14 18 18 N 1.46499 * 109.47138 * 89.99859 * 17 16 15 19 19 C 1.34777 * 119.99665 * 180.28062 * 18 17 16 20 20 O 1.21553 * 120.00289 * 359.72074 * 19 18 17 21 21 C 1.47833 * 119.99692 * 179.72375 * 19 18 17 22 22 N 1.32862 * 119.78606 * 359.97438 * 21 19 18 23 23 C 1.31368 * 121.69676 * 179.97438 * 22 21 19 24 24 C 1.38762 * 121.07002 * 0.02562 * 23 22 21 25 25 C 1.38298 * 119.44549 * 359.97438 * 24 23 22 26 26 C 1.39344 * 118.43771 * 359.73406 * 25 24 23 27 27 O 1.35651 * 120.54332 * 180.26208 * 26 25 24 28 28 C 1.38233 * 120.00119 * 0.27209 * 16 15 14 29 29 C 1.38233 * 120.00183 * 359.54098 * 28 16 15 30 30 H 1.09003 * 109.47235 * 59.99141 * 1 2 3 31 31 H 1.08992 * 109.47446 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47041 * 299.99965 * 1 2 3 33 33 H 0.96999 * 120.00156 * 94.99869 * 4 2 1 34 34 H 0.96998 * 120.00037 * 179.97438 * 8 7 5 35 35 H 1.08005 * 119.99668 * 359.97438 * 14 13 2 36 36 H 1.07995 * 119.99899 * 179.97438 * 15 14 13 37 37 H 1.09009 * 109.46601 * 329.99762 * 17 16 15 38 38 H 1.08998 * 109.47035 * 210.00270 * 17 16 15 39 39 H 0.97001 * 119.99790 * 359.97438 * 18 17 16 40 40 H 1.08003 * 119.46669 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.27837 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.78609 * 180.02562 * 25 24 23 43 43 H 0.96704 * 113.99661 * 270.27133 * 27 26 25 44 44 H 1.08002 * 120.00409 * 179.72430 * 28 16 15 45 45 H 1.08000 * 120.00597 * 180.20492 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4244 7 6 2.6114 -0.6622 3.5092 8 7 2.9243 -1.9393 3.4500 9 14 2.7892 0.2695 5.1186 10 1 1.5211 0.1782 5.8860 11 1 3.8934 -0.3240 5.9146 12 1 3.0943 1.6947 4.8343 13 6 2.0323 -0.7103 -1.2306 14 6 2.4587 0.0196 -2.3243 15 6 2.9189 -0.6320 -3.4533 16 6 2.9535 -2.0135 -3.4881 17 6 3.4558 -2.7239 -4.7186 18 7 4.9010 -2.9348 -4.6050 19 6 5.5722 -3.5510 -5.5982 20 8 4.9775 -3.9362 -6.5859 21 6 7.0316 -3.7584 -5.4863 22 7 7.6774 -3.3352 -4.4050 23 6 8.9732 -3.5002 -4.2662 24 6 9.7248 -4.1269 -5.2501 25 6 9.0989 -4.5854 -6.3950 26 6 7.7227 -4.4044 -6.5168 27 8 7.0646 -4.8422 -7.6192 28 6 2.5227 -2.7434 -2.3961 29 6 2.0661 -2.0919 -1.2657 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6319 1.1525 34 1 3.2477 -2.3966 4.2420 35 1 2.4315 1.0989 -2.2971 36 1 3.2516 -0.0618 -4.3079 37 1 3.2451 -2.1174 -5.5996 38 1 2.9542 -3.6871 -4.8122 39 1 5.3756 -2.6270 -3.8170 40 1 9.4617 -3.1417 -3.3722 41 1 10.7895 -4.2555 -5.1229 42 1 9.6628 -5.0765 -7.1742 43 1 7.0147 -4.1907 -8.3321 44 1 2.5456 -3.8228 -2.4250 45 1 1.7326 -2.6621 -0.4113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570030181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:02 Heat of formation + Delta-G solvation = -3.301916 kcal Electronic energy + Delta-G solvation = -27825.379306 eV Core-core repulsion = 23808.323780 eV Total energy + Delta-G solvation = -4017.055526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.14160 -39.59464 -38.83254 -37.62590 -35.92858 -34.48039 -32.94620 -32.24553 -30.91276 -30.67168 -30.08070 -28.32857 -26.34861 -24.69588 -23.89128 -23.58542 -22.55155 -21.65618 -20.95158 -19.71891 -18.89661 -18.42787 -17.44333 -17.31707 -16.25964 -15.98634 -15.73885 -15.44106 -15.39445 -14.81041 -14.71240 -14.33587 -14.13505 -13.73295 -13.66220 -13.44717 -13.33269 -13.09926 -13.06124 -12.88482 -12.43724 -12.23366 -11.92921 -11.80363 -11.63080 -11.14216 -10.89912 -10.84276 -10.59987 -10.54027 -10.34683 -10.28970 -9.99269 -9.76134 -9.67233 -9.42103 -9.11219 -8.97636 -8.61053 -8.29750 -6.99637 -5.78566 -3.07315 0.18911 0.66051 1.49331 1.71844 2.49716 3.00431 3.37821 3.42512 3.47647 3.49292 3.66174 3.86951 4.10876 4.35087 4.43899 4.51704 4.58048 4.74528 4.96102 5.01302 5.04258 5.24207 5.32938 5.41521 5.46519 5.51282 5.56380 5.62988 5.74011 5.80563 5.98582 5.99272 6.03806 6.26690 6.27540 6.33517 6.37500 6.51657 6.63668 6.74093 6.79966 6.96437 7.12892 7.17804 7.24727 7.30700 7.50050 7.68528 8.03650 8.39733 9.51097 10.06904 10.42184 11.44079 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.002220 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.560535 B =12608.866308 C =14177.588889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.204 3.796 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C -0.053 4.053 14 C -0.122 4.122 15 C -0.101 4.101 16 C -0.130 4.130 17 C 0.167 3.833 18 N -0.704 5.704 19 C 0.567 3.433 20 O -0.524 6.524 21 C 0.049 3.951 22 N -0.439 5.439 23 C 0.091 3.909 24 C -0.132 4.132 25 C -0.114 4.114 26 C 0.120 3.880 27 O -0.471 6.471 28 C -0.097 4.097 29 C -0.105 4.105 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.414 0.586 40 H 0.169 0.831 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.397 0.603 44 H 0.119 0.881 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.027 -2.592 -22.371 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.054 4.054 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.131 4.131 17 C 0.044 3.956 18 N -0.356 5.356 19 C 0.352 3.648 20 O -0.400 6.400 21 C -0.089 4.089 22 N -0.152 5.152 23 C -0.070 4.070 24 C -0.153 4.153 25 C -0.140 4.140 26 C 0.071 3.929 27 O -0.280 6.280 28 C -0.116 4.116 29 C -0.124 4.124 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.250 0.750 40 H 0.186 0.814 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.256 0.744 44 H 0.137 0.863 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.995 -2.857 -21.997 24.330 hybrid contribution 1.068 0.233 0.520 1.210 sum 11.063 -2.624 -21.477 24.301 Atomic orbital electron populations 1.22421 0.98245 1.01171 1.00136 1.19250 0.92135 0.94993 0.84225 0.92630 1.42524 1.78207 1.10726 1.04905 1.19241 1.36659 0.93997 0.87132 0.91083 1.24739 1.02050 0.96005 0.98076 1.69655 1.50769 1.08677 1.28913 0.86191 0.77301 0.78808 0.83896 1.21722 1.21781 1.20753 1.20527 0.95244 0.94051 0.95588 1.21004 1.00103 0.99764 0.93141 1.20907 0.99546 0.93459 0.98054 1.19623 1.03952 0.93867 0.95659 1.20192 0.79555 1.00126 0.95712 1.46013 1.08940 1.58685 1.21941 1.17710 0.85151 0.78562 0.83397 1.90816 1.68312 1.50157 1.30694 1.21757 0.95285 0.99325 0.92570 1.67629 1.10900 1.15639 1.21006 1.22908 0.88946 0.96006 0.99116 1.22362 1.02069 0.97240 0.93580 1.22019 0.93275 0.99295 0.99428 1.19400 0.90127 0.93869 0.89524 1.84776 1.76460 1.42095 1.24708 1.21019 0.98257 0.99513 0.92821 1.21082 0.99179 0.94427 0.97695 0.94315 0.93309 0.92404 0.77982 0.93470 0.86138 0.86515 0.90725 0.90628 0.74962 0.81436 0.83699 0.83502 0.74429 0.86324 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.47 37.16 0.35 -2.53 16 2 C 0.20 4.04 3.09 -69.08 -0.21 3.83 16 3 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 4 N -0.72 -17.84 5.07 -54.55 -0.28 -18.12 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 9 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C -0.05 -0.92 4.95 -104.62 -0.52 -1.44 16 14 C -0.12 -1.80 9.67 -39.58 -0.38 -2.19 16 15 C -0.10 -1.32 9.70 -39.59 -0.38 -1.71 16 16 C -0.13 -1.71 5.25 -104.62 -0.55 -2.26 16 17 C 0.17 1.99 5.80 -5.19 -0.03 1.96 16 18 N -0.70 -8.65 5.54 -62.43 -0.35 -8.99 16 19 C 0.57 7.48 7.80 -12.33 -0.10 7.39 16 20 O -0.52 -7.98 15.14 -16.63 -0.25 -8.23 16 21 C 0.05 0.57 6.76 -82.88 -0.56 0.01 16 22 N -0.44 -4.73 9.54 -9.71 -0.09 -4.82 16 23 C 0.09 0.70 11.17 -17.56 -0.20 0.50 16 24 C -0.13 -0.77 10.10 -39.37 -0.40 -1.17 16 25 C -0.11 -0.77 10.13 -39.15 -0.40 -1.17 16 26 C 0.12 1.16 6.74 -38.55 -0.26 0.90 16 27 O -0.47 -4.59 11.58 -40.60 -0.47 -5.06 16 28 C -0.10 -1.42 9.70 -39.59 -0.38 -1.80 16 29 C -0.11 -1.79 9.06 -39.58 -0.36 -2.15 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.39 10.04 6.07 -40.82 -0.25 9.79 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.12 1.59 8.04 -52.48 -0.42 1.17 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.07 0.85 8.09 -51.92 -0.42 0.43 16 38 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.41 5.07 7.79 -40.82 -0.32 4.75 16 40 H 0.17 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.40 2.23 9.06 45.56 0.41 2.64 16 44 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.13 2.34 6.92 -52.49 -0.36 1.98 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -34.12 388.46 -9.62 -43.74 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -5.12 Total: 14.59 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -4.62 Total: -8.98 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.01 Total: -59.09 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.72 Total: -13.29 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.12 -9.62 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570030181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.437 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds