Wall clock time and date at job start Wed Apr 1 2020 00:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46886 * 2 1 4 4 N 1.46498 * 109.47084 * 120.00532 * 2 1 3 5 5 C 1.36944 * 119.99700 * 274.99596 * 4 2 1 6 6 H 1.07995 * 120.00171 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99462 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00354 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99503 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46903 * 90.00121 * 9 7 5 11 11 H 1.48497 * 109.46701 * 209.99903 * 9 7 5 12 12 H 1.48497 * 109.46911 * 330.00081 * 9 7 5 13 13 C 1.50699 * 109.46764 * 240.00554 * 2 1 3 14 14 C 1.38234 * 120.00320 * 100.00287 * 13 2 1 15 15 C 1.38233 * 120.00150 * 180.02562 * 14 13 2 16 16 C 1.38231 * 119.99934 * 359.95588 * 15 14 13 17 17 C 1.50703 * 120.00146 * 180.02562 * 16 15 14 18 18 N 1.46499 * 109.47138 * 89.99859 * 17 16 15 19 19 C 1.34777 * 119.99665 * 180.28062 * 18 17 16 20 20 O 1.21553 * 120.00289 * 359.72074 * 19 18 17 21 21 C 1.47833 * 119.99692 * 179.72375 * 19 18 17 22 22 N 1.32862 * 119.78606 * 359.97438 * 21 19 18 23 23 C 1.31368 * 121.69676 * 179.97438 * 22 21 19 24 24 C 1.38762 * 121.07002 * 0.02562 * 23 22 21 25 25 C 1.38298 * 119.44549 * 359.97438 * 24 23 22 26 26 C 1.39344 * 118.43771 * 359.73406 * 25 24 23 27 27 O 1.35651 * 120.54332 * 180.26208 * 26 25 24 28 28 C 1.38233 * 120.00119 * 0.27209 * 16 15 14 29 29 C 1.38233 * 120.00183 * 359.54098 * 28 16 15 30 30 H 1.09003 * 109.47235 * 59.99141 * 1 2 3 31 31 H 1.08992 * 109.47446 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47041 * 299.99965 * 1 2 3 33 33 H 0.96999 * 120.00156 * 94.99869 * 4 2 1 34 34 H 0.96998 * 120.00037 * 179.97438 * 8 7 5 35 35 H 1.08005 * 119.99668 * 359.97438 * 14 13 2 36 36 H 1.07995 * 119.99899 * 179.97438 * 15 14 13 37 37 H 1.09009 * 109.46601 * 329.99762 * 17 16 15 38 38 H 1.08998 * 109.47035 * 210.00270 * 17 16 15 39 39 H 0.97001 * 119.99790 * 359.97438 * 18 17 16 40 40 H 1.08003 * 119.46669 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.27837 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.78609 * 180.02562 * 25 24 23 43 43 H 0.96704 * 113.99661 * 270.27133 * 27 26 25 44 44 H 1.08002 * 120.00409 * 179.72430 * 28 16 15 45 45 H 1.08000 * 120.00597 * 180.20492 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4244 7 6 2.6114 -0.6622 3.5092 8 7 2.9243 -1.9393 3.4500 9 14 2.7892 0.2695 5.1186 10 1 1.5211 0.1782 5.8860 11 1 3.8934 -0.3240 5.9146 12 1 3.0943 1.6947 4.8343 13 6 2.0323 -0.7103 -1.2306 14 6 2.4587 0.0196 -2.3243 15 6 2.9189 -0.6320 -3.4533 16 6 2.9535 -2.0135 -3.4881 17 6 3.4558 -2.7239 -4.7186 18 7 4.9010 -2.9348 -4.6050 19 6 5.5722 -3.5510 -5.5982 20 8 4.9775 -3.9362 -6.5859 21 6 7.0316 -3.7584 -5.4863 22 7 7.6774 -3.3352 -4.4050 23 6 8.9732 -3.5002 -4.2662 24 6 9.7248 -4.1269 -5.2501 25 6 9.0989 -4.5854 -6.3950 26 6 7.7227 -4.4044 -6.5168 27 8 7.0646 -4.8422 -7.6192 28 6 2.5227 -2.7434 -2.3961 29 6 2.0661 -2.0919 -1.2657 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6319 1.1525 34 1 3.2477 -2.3966 4.2420 35 1 2.4315 1.0989 -2.2971 36 1 3.2516 -0.0618 -4.3079 37 1 3.2451 -2.1174 -5.5996 38 1 2.9542 -3.6871 -4.8122 39 1 5.3756 -2.6270 -3.8170 40 1 9.4617 -3.1417 -3.3722 41 1 10.7895 -4.2555 -5.1229 42 1 9.6628 -5.0765 -7.1742 43 1 7.0147 -4.1907 -8.3321 44 1 2.5456 -3.8228 -2.4250 45 1 1.7326 -2.6621 -0.4113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570030181.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:00 Heat of formation + Delta-G solvation = -26.602321 kcal Electronic energy + Delta-G solvation = -27826.389688 eV Core-core repulsion = 23808.323780 eV Total energy + Delta-G solvation = -4018.065908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.85876 -40.70318 -39.84752 -38.30144 -37.40725 -35.74242 -34.16371 -33.44207 -31.97979 -31.76845 -31.22077 -29.99481 -27.42305 -25.96132 -25.30100 -24.28878 -23.77840 -22.95342 -21.84983 -21.11158 -19.59105 -19.38859 -19.20480 -18.05434 -17.30564 -16.98318 -16.68713 -16.56662 -16.53237 -16.05505 -15.87740 -15.64169 -15.12094 -15.04290 -14.83581 -14.48679 -14.44714 -14.27158 -14.20030 -13.77222 -13.64249 -13.50845 -13.40835 -13.04552 -12.83126 -12.71552 -12.47024 -12.43314 -12.13150 -12.01320 -11.60105 -11.55294 -11.42434 -10.99695 -10.90980 -10.45928 -10.25216 -9.92846 -9.79303 -9.55106 -9.01906 -7.93164 -5.21721 -0.46868 0.10078 0.30096 0.53029 1.47748 1.49343 1.57600 1.67698 2.09692 2.56758 2.70562 2.88112 3.05425 3.21632 3.41103 3.63898 3.78103 3.87052 3.89559 3.98606 3.99805 4.04374 4.14746 4.34750 4.44203 4.48656 4.53966 4.59118 4.66285 4.77509 4.78974 4.96352 5.01142 5.01774 5.06116 5.11856 5.21927 5.30459 5.41861 5.48942 5.51266 5.55340 5.62823 5.83503 6.09341 6.28928 6.35547 6.62352 6.76604 7.08937 7.34999 8.09673 8.33863 9.30473 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.002220 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.560535 B =12608.866308 C =14177.588889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.199 3.801 3 H 0.056 0.944 4 N -0.735 5.735 5 C -0.238 4.238 6 H 0.078 0.922 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.288 1.288 11 H -0.297 1.297 12 H -0.268 1.268 13 C -0.073 4.073 14 C -0.120 4.120 15 C -0.092 4.092 16 C -0.117 4.117 17 C 0.171 3.829 18 N -0.702 5.702 19 C 0.564 3.436 20 O -0.553 6.553 21 C 0.015 3.985 22 N -0.465 5.465 23 C 0.079 3.921 24 C -0.112 4.112 25 C -0.111 4.111 26 C 0.111 3.889 27 O -0.487 6.487 28 C -0.100 4.100 29 C -0.123 4.123 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.374 0.626 34 H 0.250 0.750 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.414 0.586 40 H 0.191 0.809 41 H 0.186 0.814 42 H 0.176 0.824 43 H 0.411 0.589 44 H 0.129 0.871 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.909 -1.537 -24.019 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.091 3.909 3 H 0.074 0.926 4 N -0.376 5.376 5 C -0.370 4.370 6 H 0.096 0.904 7 C -0.269 4.269 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.216 1.216 11 H -0.224 1.224 12 H -0.193 1.193 13 C -0.074 4.074 14 C -0.139 4.139 15 C -0.110 4.110 16 C -0.117 4.117 17 C 0.048 3.952 18 N -0.353 5.353 19 C 0.350 3.650 20 O -0.431 6.431 21 C -0.122 4.122 22 N -0.178 5.178 23 C -0.082 4.082 24 C -0.131 4.131 25 C -0.137 4.137 26 C 0.062 3.938 27 O -0.300 6.300 28 C -0.118 4.118 29 C -0.142 4.142 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.250 0.750 40 H 0.208 0.792 41 H 0.203 0.797 42 H 0.193 0.807 43 H 0.272 0.728 44 H 0.146 0.854 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.847 -1.751 -23.684 26.539 hybrid contribution 0.559 -0.101 0.896 1.061 sum 12.406 -1.852 -22.788 26.012 Atomic orbital electron populations 1.22261 0.96818 1.00864 1.00953 1.19418 0.93015 0.94728 0.83707 0.92596 1.42730 1.78484 1.10449 1.05940 1.19641 1.34855 0.94325 0.88145 0.90441 1.25545 1.02998 0.96907 1.01431 1.69819 1.52671 1.10257 1.29366 0.85158 0.76802 0.78108 0.79815 1.21566 1.22365 1.19315 1.20338 0.97302 0.94122 0.95641 1.21198 0.99316 1.00707 0.92634 1.21212 0.98052 0.93444 0.98307 1.19736 1.02551 0.94122 0.95331 1.20162 0.79539 1.00111 0.95340 1.45979 1.08896 1.58569 1.21854 1.18061 0.86153 0.77865 0.82898 1.90781 1.69208 1.51468 1.31691 1.21581 0.94476 1.02030 0.94105 1.67555 1.12552 1.16524 1.21136 1.23459 0.88205 0.95994 1.00529 1.22795 1.03777 0.94569 0.91968 1.22353 0.92014 0.98825 1.00531 1.19639 0.91334 0.93786 0.89088 1.84722 1.76924 1.43046 1.25268 1.21115 0.98007 1.00193 0.92499 1.20956 1.00742 0.94535 0.97924 0.91154 0.94185 0.93778 0.79267 0.94113 0.84217 0.83473 0.89565 0.90857 0.74973 0.79202 0.79677 0.80690 0.72840 0.85352 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.47 71.98 0.68 -4.67 16 2 C 0.20 7.95 3.09 44.25 0.14 8.08 16 3 H 0.06 2.21 7.94 -2.39 -0.02 2.19 16 4 N -0.73 -37.31 5.07 -326.50 -1.66 -38.96 16 5 C -0.24 -13.20 9.93 84.03 0.83 -12.37 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 8 N -0.97 -59.80 13.06 21.65 0.28 -59.51 16 9 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 10 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 13 C -0.07 -2.53 4.95 -19.86 -0.10 -2.63 16 14 C -0.12 -3.35 9.67 22.27 0.22 -3.13 16 15 C -0.09 -2.19 9.70 22.27 0.22 -1.97 16 16 C -0.12 -2.92 5.25 -19.87 -0.10 -3.03 16 17 C 0.17 3.90 5.80 85.63 0.50 4.40 16 18 N -0.70 -16.97 5.54 -469.71 -2.60 -19.57 16 19 C 0.56 14.95 7.80 86.78 0.68 15.62 16 20 O -0.55 -17.01 15.14 17.11 0.26 -16.75 16 21 C 0.01 0.34 6.76 41.93 0.28 0.62 16 22 N -0.46 -9.65 9.54 -184.63 -1.76 -11.41 16 23 C 0.08 1.04 11.17 84.89 0.95 1.99 16 24 C -0.11 -0.90 10.10 22.41 0.23 -0.68 16 25 C -0.11 -1.21 10.13 22.55 0.23 -0.98 16 26 C 0.11 2.04 6.74 22.94 0.15 2.20 16 27 O -0.49 -9.30 11.58 -68.67 -0.80 -10.10 16 28 C -0.10 -2.90 9.70 22.27 0.22 -2.68 16 29 C -0.12 -4.30 9.06 22.27 0.20 -4.10 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.37 20.41 6.07 -92.71 -0.56 19.85 16 34 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.14 3.31 8.04 -2.91 -0.02 3.29 16 36 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.09 1.80 8.09 -2.38 -0.02 1.78 16 38 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 39 H 0.41 10.03 7.79 -92.71 -0.72 9.30 16 40 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.19 0.00 8.06 -2.91 -0.02 -0.03 16 42 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.41 4.52 9.06 -74.05 -0.67 3.85 16 44 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 45 H 0.10 4.08 6.92 -2.91 -0.02 4.06 16 Total: -1.00 -75.94 388.46 0.63 -75.31 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.91 Total: 40.00 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.78 Total: -7.28 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -5.73 Total: -129.46 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.54 Total: -26.85 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -75.94 0.63 -75.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570030181.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.707 kcal (2) G-P(sol) polarization free energy of solvation -75.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds