Wall clock time and date at job start Wed Apr 1 2020 00:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47238 * 2 1 4 4 N 1.46501 * 109.47344 * 239.99788 * 2 1 3 5 5 C 1.36942 * 119.99717 * 85.00229 * 4 2 1 6 6 H 1.08004 * 119.99968 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99755 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00113 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99841 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47247 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47208 * 119.99515 * 9 7 5 12 12 H 1.48501 * 109.47050 * 239.99904 * 9 7 5 13 13 C 1.50703 * 109.47388 * 120.00075 * 2 1 3 14 14 C 1.38237 * 119.99743 * 260.00522 * 13 2 1 15 15 C 1.38238 * 119.99578 * 180.02562 * 14 13 2 16 16 C 1.38233 * 120.00110 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99540 * 179.97438 * 16 15 14 18 18 N 1.46495 * 109.47415 * 89.99778 * 17 16 15 19 19 C 1.34782 * 120.00124 * 179.97438 * 18 17 16 20 20 O 1.21553 * 119.99856 * 359.97438 * 19 18 17 21 21 C 1.47829 * 120.00059 * 179.97438 * 19 18 17 22 22 N 1.32862 * 119.78422 * 0.02562 * 21 19 18 23 23 C 1.31370 * 121.69556 * 179.97438 * 22 21 19 24 24 C 1.38765 * 121.06946 * 0.02562 * 23 22 21 25 25 C 1.38299 * 119.44448 * 359.97438 * 24 23 22 26 26 C 1.39345 * 118.43839 * 359.97438 * 25 24 23 27 27 O 1.35648 * 120.53990 * 179.97438 * 26 25 24 28 28 C 1.38236 * 120.00109 * 0.24610 * 16 15 14 29 29 C 1.38229 * 119.99783 * 359.50083 * 28 16 15 30 30 H 1.08996 * 109.47581 * 299.99683 * 1 2 3 31 31 H 1.08997 * 109.47271 * 60.00201 * 1 2 3 32 32 H 1.09001 * 109.46734 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00192 * 264.99906 * 4 2 1 34 34 H 0.97008 * 119.99877 * 180.02562 * 8 7 5 35 35 H 1.07994 * 120.00437 * 359.97438 * 14 13 2 36 36 H 1.08003 * 119.99685 * 179.97438 * 15 14 13 37 37 H 1.09000 * 109.47083 * 329.99054 * 17 16 15 38 38 H 1.09006 * 109.46674 * 209.99397 * 17 16 15 39 39 H 0.96999 * 120.00313 * 359.97438 * 18 17 16 40 40 H 1.07998 * 119.46582 * 180.27430 * 23 22 21 41 41 H 1.08000 * 120.27441 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.78046 * 180.02562 * 25 24 23 43 43 H 0.96698 * 114.00158 * 89.99461 * 27 26 25 44 44 H 1.07997 * 119.99667 * 179.72807 * 28 16 15 45 45 H 1.08003 * 119.99931 * 180.22747 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8919 1.0404 -2.4243 7 6 2.6114 -0.6620 -3.5092 8 7 2.9244 -1.9390 -3.4501 9 14 2.7892 0.2697 -5.1185 10 1 2.3743 1.6820 -4.9213 11 1 4.2060 0.2269 -5.5614 12 1 1.9281 -0.3589 -6.1522 13 6 2.0324 -0.7104 1.2305 14 6 2.4587 0.0195 2.3243 15 6 2.9200 -0.6322 3.4528 16 6 2.9555 -2.0137 3.4872 17 6 3.4590 -2.7240 4.7172 18 7 2.3401 -2.9743 5.6290 19 6 2.5542 -3.6029 6.8019 20 8 3.6756 -3.9626 7.1029 21 6 1.4251 -3.8551 7.7223 22 7 0.2011 -3.4606 7.3887 23 6 -0.8292 -3.6657 8.1777 24 6 -0.6792 -4.3063 9.3994 25 6 0.5752 -4.7362 9.7922 26 6 1.6523 -4.5083 8.9381 27 8 2.9013 -4.9116 9.2810 28 6 2.5345 -2.7434 2.3912 29 6 2.0683 -2.0919 1.2648 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 -1.1526 34 1 3.2478 -2.3963 -4.2422 35 1 2.4321 1.0987 2.2970 36 1 3.2535 -0.0620 4.3072 37 1 4.2028 -2.1030 5.2165 38 1 3.9121 -3.6726 4.4290 39 1 1.4451 -2.6877 5.3887 40 1 -1.8093 -3.3338 7.8686 41 1 -1.5350 -4.4679 10.0381 42 1 0.7165 -5.2375 10.7383 43 1 3.1189 -5.8078 8.9904 44 1 2.5664 -3.8226 2.4165 45 1 1.7359 -2.6621 0.4099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570030182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:10 Heat of formation + Delta-G solvation = -3.363706 kcal Electronic energy + Delta-G solvation = -27710.809116 eV Core-core repulsion = 23693.750911 eV Total energy + Delta-G solvation = -4017.058206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.20004 -39.61238 -38.85933 -37.67627 -35.93910 -34.50470 -33.00220 -32.25816 -30.96459 -30.67538 -30.09849 -28.33286 -26.37113 -24.74098 -23.91201 -23.63155 -22.55402 -21.66475 -20.99941 -19.72345 -18.94445 -18.47699 -17.46402 -17.35640 -16.33018 -15.94805 -15.76892 -15.63222 -15.26795 -14.92534 -14.68011 -14.32017 -14.20395 -13.78170 -13.72791 -13.37281 -13.33122 -13.16083 -13.05167 -12.98096 -12.44506 -12.29364 -11.91770 -11.85241 -11.51228 -11.21818 -10.90028 -10.85908 -10.62704 -10.57110 -10.41020 -10.27014 -9.97147 -9.81318 -9.68400 -9.47863 -9.14961 -8.98357 -8.61019 -8.29814 -6.99658 -5.78830 -3.07509 0.12654 0.59239 1.49041 1.71866 2.44655 2.95961 3.31679 3.42427 3.48021 3.50249 3.61121 3.80497 4.09436 4.28268 4.38571 4.44852 4.58076 4.73912 4.89298 4.97829 5.01631 5.24718 5.33280 5.40715 5.42259 5.44278 5.56323 5.63216 5.74117 5.80217 5.92277 5.98580 6.03789 6.23639 6.27360 6.33057 6.37345 6.51451 6.63506 6.74083 6.79641 6.96149 7.07193 7.17687 7.19659 7.30442 7.44661 7.69015 7.99896 8.39506 9.50955 10.06737 10.41938 11.43882 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.001860 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.041904 B =15051.146008 C =15519.990497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.239 4.239 6 H 0.072 0.928 7 C -0.014 4.014 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.053 4.053 14 C -0.121 4.121 15 C -0.101 4.101 16 C -0.130 4.130 17 C 0.166 3.834 18 N -0.704 5.704 19 C 0.566 3.434 20 O -0.522 6.522 21 C 0.049 3.951 22 N -0.440 5.440 23 C 0.089 3.911 24 C -0.133 4.133 25 C -0.113 4.113 26 C 0.121 3.879 27 O -0.471 6.471 28 C -0.097 4.097 29 C -0.106 4.106 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.412 0.588 40 H 0.168 0.832 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.399 0.601 44 H 0.119 0.881 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.511 -5.887 28.093 29.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.370 4.370 6 H 0.090 0.910 7 C -0.210 4.210 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.054 4.054 14 C -0.140 4.140 15 C -0.119 4.119 16 C -0.131 4.131 17 C 0.043 3.957 18 N -0.356 5.356 19 C 0.351 3.649 20 O -0.397 6.397 21 C -0.089 4.089 22 N -0.153 5.153 23 C -0.071 4.071 24 C -0.153 4.153 25 C -0.140 4.140 26 C 0.072 3.928 27 O -0.281 6.281 28 C -0.116 4.116 29 C -0.124 4.124 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.248 0.752 40 H 0.185 0.815 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.257 0.743 44 H 0.137 0.863 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.658 -5.058 27.578 28.818 hybrid contribution -0.226 -0.607 -0.451 0.789 sum -6.884 -5.665 27.127 28.555 Atomic orbital electron populations 1.22414 0.98234 1.01152 1.00134 1.19252 0.92149 0.95002 0.84215 0.92624 1.42535 1.78196 1.10724 1.04925 1.19291 1.36546 0.94020 0.87106 0.91007 1.24746 1.02073 0.96017 0.98120 1.69668 1.50829 1.08676 1.28836 0.86114 0.77314 0.78797 0.83938 1.20530 1.21872 1.21887 1.20526 0.95247 0.94054 0.95578 1.21008 1.00054 0.99781 0.93156 1.20924 0.99520 0.93496 0.98004 1.19616 1.04229 0.93867 0.95361 1.20208 0.88195 1.00054 0.87200 1.46000 1.12902 1.58506 1.18151 1.17712 0.87090 0.78860 0.81286 1.90829 1.22609 1.51381 1.74915 1.21763 0.92350 1.00861 0.93920 1.67615 0.98389 1.15813 1.33495 1.22878 0.97771 0.95792 0.90695 1.22355 0.97896 0.97260 0.97773 1.22027 0.91768 0.99608 1.00567 1.19403 0.85712 0.96178 0.91510 1.84767 1.26804 1.37214 1.79283 1.21006 0.98172 0.99465 0.92963 1.21077 0.99162 0.94429 0.97749 0.94307 0.92416 0.93317 0.77990 0.93522 0.86128 0.86487 0.90628 0.90556 0.75154 0.81530 0.83718 0.83476 0.74285 0.86346 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.47 37.16 0.35 -2.50 16 2 C 0.20 4.04 3.09 -69.08 -0.21 3.83 16 3 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 4 N -0.72 -17.88 5.07 -54.55 -0.28 -18.16 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 9 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 C -0.05 -0.92 4.95 -104.62 -0.52 -1.44 16 14 C -0.12 -1.81 9.67 -39.58 -0.38 -2.20 16 15 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 16 16 C -0.13 -1.71 5.25 -104.62 -0.55 -2.26 16 17 C 0.17 1.98 5.80 -5.19 -0.03 1.95 16 18 N -0.70 -8.13 5.54 -62.43 -0.35 -8.48 16 19 C 0.57 7.13 7.80 -12.33 -0.10 7.03 16 20 O -0.52 -7.81 15.14 -16.63 -0.25 -8.06 16 21 C 0.05 0.53 6.76 -82.88 -0.56 -0.03 16 22 N -0.44 -4.17 9.54 -9.71 -0.09 -4.27 16 23 C 0.09 0.57 11.17 -17.55 -0.20 0.37 16 24 C -0.13 -0.63 10.10 -39.36 -0.40 -1.03 16 25 C -0.11 -0.68 10.13 -39.15 -0.40 -1.08 16 26 C 0.12 1.09 6.74 -38.56 -0.26 0.83 16 27 O -0.47 -4.37 11.58 -40.59 -0.47 -4.84 16 28 C -0.10 -1.40 9.70 -39.59 -0.38 -1.79 16 29 C -0.11 -1.79 9.06 -39.59 -0.36 -2.15 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.38 10.05 6.06 -40.82 -0.25 9.80 16 34 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.12 1.61 8.04 -52.49 -0.42 1.18 16 36 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.41 4.51 7.79 -40.82 -0.32 4.19 16 40 H 0.17 0.59 8.06 -52.49 -0.42 0.16 16 41 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 42 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.40 2.12 9.06 45.56 0.41 2.54 16 44 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.13 2.32 6.91 -52.48 -0.36 1.96 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -34.29 388.45 -9.62 -43.91 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.12 Total: 13.37 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -4.62 Total: -9.37 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.01 Total: -58.14 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.72 Total: -12.90 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.29 -9.62 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570030182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.544 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds