Wall clock time and date at job start Wed Apr 1 2020 00:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47238 * 2 1 4 4 N 1.46501 * 109.47344 * 239.99788 * 2 1 3 5 5 C 1.36942 * 119.99717 * 85.00229 * 4 2 1 6 6 H 1.08004 * 119.99968 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99755 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00113 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99841 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47247 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47208 * 119.99515 * 9 7 5 12 12 H 1.48501 * 109.47050 * 239.99904 * 9 7 5 13 13 C 1.50703 * 109.47388 * 120.00075 * 2 1 3 14 14 C 1.38237 * 119.99743 * 260.00522 * 13 2 1 15 15 C 1.38238 * 119.99578 * 180.02562 * 14 13 2 16 16 C 1.38233 * 120.00110 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99540 * 179.97438 * 16 15 14 18 18 N 1.46495 * 109.47415 * 89.99778 * 17 16 15 19 19 C 1.34782 * 120.00124 * 179.97438 * 18 17 16 20 20 O 1.21553 * 119.99856 * 359.97438 * 19 18 17 21 21 C 1.47829 * 120.00059 * 179.97438 * 19 18 17 22 22 N 1.32862 * 119.78422 * 0.02562 * 21 19 18 23 23 C 1.31370 * 121.69556 * 179.97438 * 22 21 19 24 24 C 1.38765 * 121.06946 * 0.02562 * 23 22 21 25 25 C 1.38299 * 119.44448 * 359.97438 * 24 23 22 26 26 C 1.39345 * 118.43839 * 359.97438 * 25 24 23 27 27 O 1.35648 * 120.53990 * 179.97438 * 26 25 24 28 28 C 1.38236 * 120.00109 * 0.24610 * 16 15 14 29 29 C 1.38229 * 119.99783 * 359.50083 * 28 16 15 30 30 H 1.08996 * 109.47581 * 299.99683 * 1 2 3 31 31 H 1.08997 * 109.47271 * 60.00201 * 1 2 3 32 32 H 1.09001 * 109.46734 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00192 * 264.99906 * 4 2 1 34 34 H 0.97008 * 119.99877 * 180.02562 * 8 7 5 35 35 H 1.07994 * 120.00437 * 359.97438 * 14 13 2 36 36 H 1.08003 * 119.99685 * 179.97438 * 15 14 13 37 37 H 1.09000 * 109.47083 * 329.99054 * 17 16 15 38 38 H 1.09006 * 109.46674 * 209.99397 * 17 16 15 39 39 H 0.96999 * 120.00313 * 359.97438 * 18 17 16 40 40 H 1.07998 * 119.46582 * 180.27430 * 23 22 21 41 41 H 1.08000 * 120.27441 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.78046 * 180.02562 * 25 24 23 43 43 H 0.96698 * 114.00158 * 89.99461 * 27 26 25 44 44 H 1.07997 * 119.99667 * 179.72807 * 28 16 15 45 45 H 1.08003 * 119.99931 * 180.22747 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8919 1.0404 -2.4243 7 6 2.6114 -0.6620 -3.5092 8 7 2.9244 -1.9390 -3.4501 9 14 2.7892 0.2697 -5.1185 10 1 2.3743 1.6820 -4.9213 11 1 4.2060 0.2269 -5.5614 12 1 1.9281 -0.3589 -6.1522 13 6 2.0324 -0.7104 1.2305 14 6 2.4587 0.0195 2.3243 15 6 2.9200 -0.6322 3.4528 16 6 2.9555 -2.0137 3.4872 17 6 3.4590 -2.7240 4.7172 18 7 2.3401 -2.9743 5.6290 19 6 2.5542 -3.6029 6.8019 20 8 3.6756 -3.9626 7.1029 21 6 1.4251 -3.8551 7.7223 22 7 0.2011 -3.4606 7.3887 23 6 -0.8292 -3.6657 8.1777 24 6 -0.6792 -4.3063 9.3994 25 6 0.5752 -4.7362 9.7922 26 6 1.6523 -4.5083 8.9381 27 8 2.9013 -4.9116 9.2810 28 6 2.5345 -2.7434 2.3912 29 6 2.0683 -2.0919 1.2648 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 -1.1526 34 1 3.2478 -2.3963 -4.2422 35 1 2.4321 1.0987 2.2970 36 1 3.2535 -0.0620 4.3072 37 1 4.2028 -2.1030 5.2165 38 1 3.9121 -3.6726 4.4290 39 1 1.4451 -2.6877 5.3887 40 1 -1.8093 -3.3338 7.8686 41 1 -1.5350 -4.4679 10.0381 42 1 0.7165 -5.2375 10.7383 43 1 3.1189 -5.8078 8.9904 44 1 2.5664 -3.8226 2.4165 45 1 1.7359 -2.6621 0.4099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570030182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:08 Heat of formation + Delta-G solvation = -26.864039 kcal Electronic energy + Delta-G solvation = -27711.828167 eV Core-core repulsion = 23693.750911 eV Total energy + Delta-G solvation = -4018.077257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.85109 -40.70371 -39.84341 -38.29414 -37.41150 -35.74864 -34.16774 -33.43263 -31.98203 -31.76761 -31.21607 -29.99375 -27.42384 -25.96614 -25.29533 -24.27600 -23.77715 -22.95563 -21.85507 -21.11478 -19.58621 -19.39593 -19.19900 -18.03891 -17.31631 -16.88764 -16.81074 -16.64637 -16.28885 -16.24050 -15.76161 -15.68870 -15.14810 -15.01417 -14.82365 -14.47420 -14.43496 -14.28177 -14.18630 -13.84240 -13.63312 -13.51795 -13.43079 -12.98163 -12.80960 -12.72419 -12.49769 -12.44919 -12.09657 -12.02012 -11.60558 -11.53845 -11.42723 -11.01765 -10.89663 -10.45549 -10.25120 -9.92072 -9.79354 -9.55194 -9.02315 -7.94119 -5.22484 -0.46070 0.11095 0.29990 0.52870 1.47375 1.47918 1.57901 1.68859 2.09242 2.56049 2.71087 2.87846 3.06380 3.22235 3.40454 3.64222 3.78739 3.86807 3.90634 3.98271 4.00752 4.04091 4.15081 4.34214 4.45173 4.49477 4.54176 4.59129 4.66666 4.77812 4.78951 4.97821 5.01680 5.03145 5.06427 5.11891 5.22180 5.30375 5.42183 5.50064 5.51020 5.55673 5.62560 5.83401 6.09116 6.28316 6.37165 6.62172 6.77403 7.10417 7.34317 8.09172 8.33133 9.29696 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.001860 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.041904 B =15051.146008 C =15519.990497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.199 3.801 3 H 0.055 0.945 4 N -0.735 5.735 5 C -0.236 4.236 6 H 0.078 0.922 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.264 1.264 11 H -0.296 1.296 12 H -0.295 1.295 13 C -0.073 4.073 14 C -0.120 4.120 15 C -0.094 4.094 16 C -0.117 4.117 17 C 0.171 3.829 18 N -0.699 5.699 19 C 0.563 3.437 20 O -0.555 6.555 21 C 0.016 3.984 22 N -0.462 5.462 23 C 0.081 3.919 24 C -0.112 4.112 25 C -0.112 4.112 26 C 0.109 3.891 27 O -0.489 6.489 28 C -0.098 4.098 29 C -0.122 4.122 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.374 0.626 34 H 0.250 0.750 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.416 0.584 40 H 0.196 0.804 41 H 0.186 0.814 42 H 0.174 0.826 43 H 0.410 0.590 44 H 0.131 0.869 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.028 -5.031 30.794 32.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.091 3.909 3 H 0.073 0.927 4 N -0.376 5.376 5 C -0.368 4.368 6 H 0.096 0.904 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.223 1.223 12 H -0.222 1.222 13 C -0.074 4.074 14 C -0.139 4.139 15 C -0.112 4.112 16 C -0.117 4.117 17 C 0.048 3.952 18 N -0.350 5.350 19 C 0.349 3.651 20 O -0.434 6.434 21 C -0.121 4.121 22 N -0.175 5.175 23 C -0.080 4.080 24 C -0.131 4.131 25 C -0.138 4.138 26 C 0.060 3.940 27 O -0.301 6.301 28 C -0.116 4.116 29 C -0.141 4.141 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.252 0.748 40 H 0.212 0.788 41 H 0.204 0.796 42 H 0.191 0.809 43 H 0.271 0.729 44 H 0.149 0.851 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.205 -4.164 30.305 31.671 hybrid contribution 0.140 -0.894 -1.086 1.413 sum -8.064 -5.058 29.220 30.731 Atomic orbital electron populations 1.22247 0.96658 1.00931 1.00958 1.19424 0.93136 0.94676 0.83670 0.92700 1.42743 1.78478 1.10457 1.05954 1.19683 1.34685 0.94323 0.88123 0.90397 1.25553 1.03070 0.96934 1.01482 1.69827 1.52749 1.10247 1.29313 0.85083 0.76662 0.78272 0.79814 1.18873 1.22303 1.22190 1.20337 0.97291 0.94179 0.95585 1.21186 0.99342 1.00678 0.92670 1.21209 0.98214 0.93565 0.98209 1.19725 1.02782 0.94053 0.95148 1.20121 0.88402 0.99900 0.86735 1.45916 1.12817 1.58352 1.17934 1.18105 0.87438 0.78106 0.81460 1.90793 1.24042 1.52845 1.75675 1.21531 0.92376 1.03586 0.94605 1.67552 0.98542 1.16658 1.34725 1.23495 0.98017 0.95405 0.91056 1.22811 0.98595 0.94532 0.97190 1.22348 0.91258 0.99316 1.00912 1.19663 0.86323 0.96340 0.91688 1.84715 1.27592 1.38409 1.79389 1.21114 0.97749 1.00256 0.92520 1.20963 1.00646 0.94482 0.98011 0.91110 0.93809 0.94063 0.79251 0.94131 0.84314 0.83740 0.90249 0.90764 0.74751 0.78770 0.79648 0.80900 0.72907 0.85104 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.47 71.98 0.68 -4.57 16 2 C 0.20 7.92 3.09 44.24 0.14 8.05 16 3 H 0.06 2.17 7.94 -2.39 -0.02 2.15 16 4 N -0.74 -37.33 5.07 -326.49 -1.66 -38.99 16 5 C -0.24 -13.15 9.93 84.03 0.83 -12.31 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 8 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 9 Si 0.97 46.53 29.55 68.60 2.03 48.55 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 13 C -0.07 -2.52 4.95 -19.86 -0.10 -2.62 16 14 C -0.12 -3.39 9.67 22.27 0.22 -3.17 16 15 C -0.09 -2.28 9.70 22.27 0.22 -2.07 16 16 C -0.12 -2.92 5.25 -19.87 -0.10 -3.02 16 17 C 0.17 3.94 5.80 85.63 0.50 4.43 16 18 N -0.70 -15.79 5.54 -469.71 -2.60 -18.40 16 19 C 0.56 14.24 7.80 86.78 0.68 14.92 16 20 O -0.56 -16.95 15.14 17.11 0.26 -16.69 16 21 C 0.02 0.33 6.76 41.93 0.28 0.61 16 22 N -0.46 -8.15 9.54 -184.64 -1.76 -9.91 16 23 C 0.08 0.81 11.17 84.89 0.95 1.75 16 24 C -0.11 -0.64 10.10 22.41 0.23 -0.41 16 25 C -0.11 -1.04 10.13 22.55 0.23 -0.81 16 26 C 0.11 1.87 6.74 22.93 0.15 2.02 16 27 O -0.49 -9.03 11.58 -68.63 -0.79 -9.82 16 28 C -0.10 -2.80 9.70 22.27 0.22 -2.59 16 29 C -0.12 -4.24 9.06 22.27 0.20 -4.04 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.37 20.40 6.06 -92.71 -0.56 19.83 16 34 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 35 H 0.14 3.35 8.04 -2.91 -0.02 3.33 16 36 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 37 H 0.08 1.80 8.09 -2.39 -0.02 1.78 16 38 H 0.07 1.76 8.08 -2.38 -0.02 1.74 16 39 H 0.42 8.80 7.79 -92.71 -0.72 8.08 16 40 H 0.20 0.67 8.06 -2.91 -0.02 0.65 16 41 H 0.19 -0.45 8.06 -2.91 -0.02 -0.47 16 42 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 43 H 0.41 4.50 9.06 -74.06 -0.67 3.83 16 44 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 45 H 0.10 4.07 6.91 -2.91 -0.02 4.05 16 Total: -1.00 -76.44 388.45 0.63 -75.81 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.90 Total: 37.07 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.78 Total: -7.89 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -5.73 Total: -127.02 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.54 Total: -26.52 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -76.44 0.63 -75.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570030182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.944 kcal (2) G-P(sol) polarization free energy of solvation -76.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds