Wall clock time and date at job start Wed Apr 1 2020 01:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46704 * 2 1 4 4 N 1.46491 * 109.47138 * 120.00113 * 2 1 3 5 5 C 1.36940 * 120.00231 * 274.99861 * 4 2 1 6 6 H 1.07998 * 119.99906 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99913 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99697 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00285 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47247 * 89.99710 * 9 7 5 11 11 H 1.48500 * 109.47048 * 209.99870 * 9 7 5 12 12 H 1.48500 * 109.46870 * 329.99809 * 9 7 5 13 13 C 1.52997 * 109.46842 * 240.00505 * 2 1 3 14 14 H 1.08997 * 109.55821 * 64.87237 * 13 2 1 15 15 C 1.53300 * 109.51089 * 184.99826 * 13 2 1 16 16 N 1.47148 * 108.41473 * 172.24371 * 15 13 2 17 17 C 1.34778 * 120.98259 * 129.42375 * 16 15 13 18 18 O 1.21278 * 119.99716 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99874 * 179.97438 * 17 16 15 20 20 N 1.46507 * 109.46913 * 179.97438 * 19 17 16 21 21 C 1.36367 * 125.96164 * 269.69484 * 20 19 17 22 22 O 1.35623 * 125.99393 * 0.03503 * 21 20 19 23 23 N 1.30908 * 108.01798 * 179.88624 * 21 20 19 24 24 N 1.40116 * 107.94273 * 0.37240 * 23 21 20 25 25 C 1.30906 * 107.93758 * 359.75983 * 24 23 21 26 26 O 1.35628 * 125.98795 * 180.02562 * 25 24 23 27 27 C 1.47156 * 118.03649 * 309.44697 * 16 15 13 28 28 C 1.53286 * 108.38530 * 50.53434 * 27 16 15 29 29 O 1.42961 * 109.22305 * 307.70098 * 28 27 16 30 30 H 1.09002 * 109.47084 * 299.99355 * 1 2 3 31 31 H 1.08996 * 109.47144 * 59.99713 * 1 2 3 32 32 H 1.08997 * 109.46587 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99975 * 95.00354 * 4 2 1 34 34 H 0.97000 * 119.99830 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.68260 * 52.49979 * 15 13 2 36 36 H 1.08999 * 109.68056 * 291.98411 * 15 13 2 37 37 H 1.08993 * 109.47438 * 300.00006 * 19 17 16 38 38 H 1.08998 * 109.46742 * 60.00431 * 19 17 16 39 39 H 0.96699 * 114.00130 * 90.00294 * 22 21 20 40 40 H 0.96710 * 113.99553 * 269.98159 * 26 25 24 41 41 H 1.08998 * 109.67987 * 170.26585 * 27 16 15 42 42 H 1.09005 * 109.67921 * 290.80906 * 27 16 15 43 43 H 1.09003 * 109.51258 * 67.62584 * 28 27 16 44 44 H 1.09002 * 109.51282 * 187.72484 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6124 -0.6618 3.5089 8 7 2.7386 -0.0051 4.6426 9 14 3.0580 -2.4739 3.4246 10 1 4.4907 -2.6150 3.0606 11 1 2.8189 -3.1045 4.7477 12 1 2.2184 -3.1429 2.3985 13 6 2.0400 -0.7211 -1.2493 14 1 1.7504 -0.1604 -2.1380 15 6 3.5678 -0.8317 -1.1889 16 7 4.0162 -1.6869 -2.2992 17 6 4.9967 -1.2852 -3.1322 18 8 5.5235 -0.2046 -2.9720 19 6 5.4390 -2.1792 -4.2619 20 7 6.5081 -1.5201 -5.0162 21 6 6.3404 -0.7011 -6.0936 22 8 5.1552 -0.3535 -6.6537 23 7 7.5239 -0.3065 -6.4903 24 7 8.4790 -0.8945 -5.6505 25 6 7.8449 -1.6234 -4.7671 26 8 8.4172 -2.3530 -3.7773 27 6 3.3622 -2.9935 -2.4736 28 6 1.8444 -2.7786 -2.4717 29 8 1.4759 -2.0343 -1.3081 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1525 34 1 3.0619 -0.4624 5.4345 35 1 3.8665 -1.2760 -0.2395 36 1 4.0116 0.1591 -1.2863 37 1 5.8075 -3.1215 -3.8566 38 1 4.5947 -2.3735 -4.9233 39 1 4.7617 0.4457 -6.2775 40 1 8.6302 -3.2615 -4.0312 41 1 3.6695 -3.4342 -3.4220 42 1 3.6402 -3.6556 -1.6535 43 1 1.5540 -2.2253 -3.3649 44 1 1.3399 -3.7447 -2.4618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725322428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:25 Heat of formation + Delta-G solvation = -26.327673 kcal Electronic energy + Delta-G solvation = -31011.004811 eV Core-core repulsion = 26582.101550 eV Total energy + Delta-G solvation = -4428.903261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.68067 -40.62716 -38.76155 -38.55398 -37.45881 -35.88311 -34.92952 -34.73041 -32.41773 -30.75732 -29.92185 -29.32783 -29.03324 -27.26674 -24.36218 -23.52449 -23.15371 -22.84352 -22.22422 -20.16053 -19.86492 -19.27501 -18.89541 -18.14277 -17.76673 -17.26038 -16.72988 -16.49419 -16.02929 -15.84130 -15.64682 -15.24650 -14.98091 -14.46413 -14.36994 -13.93297 -13.85728 -13.67110 -13.28343 -13.06963 -12.87104 -12.79292 -12.58147 -12.40833 -12.14672 -11.84184 -11.71090 -11.48763 -11.09063 -11.00424 -10.94664 -10.90818 -10.72408 -10.48770 -10.20597 -10.12017 -9.92935 -9.76616 -9.62852 -9.04400 -8.78057 -7.32914 -5.81599 -3.17619 1.05365 1.35494 1.87790 2.04164 2.45170 2.87295 3.32453 3.33989 3.36096 3.40839 3.62642 3.76784 3.89609 4.27488 4.42505 4.53707 4.54693 4.74809 4.81787 4.82839 4.94170 5.03405 5.12744 5.27210 5.37135 5.40998 5.43240 5.50732 5.65908 5.69431 5.94343 6.02313 6.17195 6.18879 6.38025 6.62241 6.63452 6.85645 6.94307 6.96402 7.13427 7.53530 7.62113 7.93888 8.37239 9.15546 9.87398 10.07399 11.36609 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.003121 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.393503 B = 8969.977336 C = 9707.072734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.188 3.812 3 H 0.070 0.930 4 N -0.743 5.743 5 C -0.245 4.245 6 H 0.091 0.909 7 C 0.008 3.992 8 N -0.932 5.932 9 Si 0.879 3.121 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.274 1.274 13 C 0.075 3.925 14 H 0.062 0.938 15 C 0.085 3.915 16 N -0.607 5.607 17 C 0.498 3.502 18 O -0.521 6.521 19 C 0.084 3.916 20 N -0.498 5.498 21 C 0.416 3.584 22 O -0.438 6.438 23 N -0.292 5.292 24 N -0.294 5.294 25 C 0.418 3.582 26 O -0.431 6.431 27 C 0.066 3.934 28 C 0.047 3.953 29 O -0.361 6.361 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.365 0.635 34 H 0.260 0.740 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.416 0.584 40 H 0.410 0.590 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 -10.237 -22.851 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 H 0.088 0.912 4 N -0.387 5.387 5 C -0.375 4.375 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.579 5.579 9 Si 0.709 3.291 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.200 1.200 13 C 0.016 3.984 14 H 0.080 0.920 15 C -0.036 4.036 16 N -0.342 5.342 17 C 0.283 3.717 18 O -0.396 6.396 19 C -0.044 4.044 20 N -0.219 5.219 21 C 0.106 3.894 22 O -0.239 6.239 23 N -0.136 5.136 24 N -0.138 5.138 25 C 0.108 3.892 26 O -0.231 6.231 27 C -0.058 4.058 28 C -0.031 4.031 29 O -0.279 6.279 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.199 0.801 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.275 0.725 40 H 0.268 0.732 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.651 -8.809 -23.242 24.997 hybrid contribution -0.829 -2.132 0.906 2.460 sum 1.823 -10.941 -22.336 24.938 Atomic orbital electron populations 1.22300 0.97814 1.01670 1.00234 1.20238 0.93133 0.94882 0.83928 0.91232 1.42761 1.79449 1.09560 1.06887 1.19061 1.37163 0.95509 0.85761 0.89111 1.24648 1.01333 0.97342 0.95529 1.69695 1.52379 1.35581 1.00278 0.86620 0.78364 0.87064 0.77023 1.21219 1.21732 1.19961 1.23019 0.91182 0.84081 1.00128 0.92047 1.22521 0.95236 0.96926 0.88954 1.48219 1.36271 1.19170 1.30491 1.20534 0.80229 0.87636 0.83297 1.90811 1.54282 1.22279 1.72225 1.21764 0.91737 0.96610 0.94280 1.46631 1.07556 1.41946 1.25737 1.21263 0.88999 0.93347 0.85814 1.84877 1.30125 1.50038 1.58871 1.78374 0.95188 1.19763 1.20280 1.78381 1.19263 1.12470 1.03677 1.21275 0.79356 0.97329 0.91197 1.85055 1.77743 1.28972 1.31290 1.22604 0.95032 0.85028 1.03105 1.22900 0.92694 0.97832 0.89674 1.88128 1.70985 1.27224 1.41604 0.92223 0.94498 0.92556 0.80102 0.93018 0.88746 0.87910 0.85593 0.85263 0.72529 0.73169 0.89391 0.89584 0.92829 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.30 37.16 0.35 -2.32 16 2 C 0.19 3.32 2.80 -67.94 -0.19 3.13 16 3 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 4 N -0.74 -16.43 4.05 -53.43 -0.22 -16.65 16 5 C -0.25 -6.61 10.41 -15.06 -0.16 -6.77 16 6 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 7 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 8 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 9 Si 0.88 21.49 27.74 -169.99 -4.71 16.77 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.30 6.52 56.52 0.37 -5.93 16 13 C 0.08 1.05 2.57 -26.58 -0.07 0.99 16 14 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 15 C 0.09 1.24 5.82 -3.53 -0.02 1.22 16 16 N -0.61 -6.57 3.02 -172.28 -0.52 -7.09 16 17 C 0.50 5.53 7.78 -10.98 -0.09 5.45 16 18 O -0.52 -8.28 15.90 5.56 0.09 -8.19 16 19 C 0.08 0.56 4.87 -5.19 -0.03 0.53 16 20 N -0.50 -4.85 2.25 -121.35 -0.27 -5.12 16 21 C 0.42 4.52 9.15 -88.81 -0.81 3.70 16 22 O -0.44 -3.38 13.57 -18.57 -0.25 -3.63 16 23 N -0.29 -4.05 12.72 29.65 0.38 -3.67 16 24 N -0.29 -4.12 12.72 29.65 0.38 -3.75 16 25 C 0.42 4.70 9.15 -88.81 -0.81 3.89 16 26 O -0.43 -3.68 13.58 -18.58 -0.25 -3.93 16 27 C 0.07 0.47 6.54 -3.54 -0.02 0.45 16 28 C 0.05 0.39 6.99 37.31 0.26 0.65 16 29 O -0.36 -4.84 9.25 -35.23 -0.33 -5.17 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.96 7.57 -51.93 -0.39 0.57 16 33 H 0.37 8.11 4.94 -40.82 -0.20 7.90 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.09 1.63 6.94 -51.93 -0.36 1.27 16 36 H 0.10 1.65 7.08 -51.93 -0.37 1.28 16 37 H 0.13 0.47 8.02 -51.93 -0.42 0.05 16 38 H 0.13 0.48 7.65 -51.93 -0.40 0.08 16 39 H 0.42 1.67 9.06 45.56 0.41 2.09 16 40 H 0.41 0.83 9.06 45.56 0.41 1.24 16 41 H 0.09 0.27 6.05 -51.93 -0.31 -0.05 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -39.62 370.05 -5.22 -44.84 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.17 Total: 6.98 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -1.69 Total: 11.03 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: 0.52 Total: -64.27 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.74 Total: -20.93 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.62 -5.22 -44.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725322428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.511 kcal (2) G-P(sol) polarization free energy of solvation -39.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds