Wall clock time and date at job start Wed Apr 1 2020 01:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46704 * 2 1 4 4 N 1.46491 * 109.47138 * 120.00113 * 2 1 3 5 5 C 1.36940 * 120.00231 * 274.99861 * 4 2 1 6 6 H 1.07998 * 119.99906 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99913 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99697 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00285 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47247 * 89.99710 * 9 7 5 11 11 H 1.48500 * 109.47048 * 209.99870 * 9 7 5 12 12 H 1.48500 * 109.46870 * 329.99809 * 9 7 5 13 13 C 1.52997 * 109.46842 * 240.00505 * 2 1 3 14 14 H 1.08997 * 109.55821 * 64.87237 * 13 2 1 15 15 C 1.53300 * 109.51089 * 184.99826 * 13 2 1 16 16 N 1.47148 * 108.41473 * 172.24371 * 15 13 2 17 17 C 1.34778 * 120.98259 * 129.42375 * 16 15 13 18 18 O 1.21278 * 119.99716 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99874 * 179.97438 * 17 16 15 20 20 N 1.46507 * 109.46913 * 179.97438 * 19 17 16 21 21 C 1.36367 * 125.96164 * 269.69484 * 20 19 17 22 22 O 1.35623 * 125.99393 * 0.03503 * 21 20 19 23 23 N 1.30908 * 108.01798 * 179.88624 * 21 20 19 24 24 N 1.40116 * 107.94273 * 0.37240 * 23 21 20 25 25 C 1.30906 * 107.93758 * 359.75983 * 24 23 21 26 26 O 1.35628 * 125.98795 * 180.02562 * 25 24 23 27 27 C 1.47156 * 118.03649 * 309.44697 * 16 15 13 28 28 C 1.53286 * 108.38530 * 50.53434 * 27 16 15 29 29 O 1.42961 * 109.22305 * 307.70098 * 28 27 16 30 30 H 1.09002 * 109.47084 * 299.99355 * 1 2 3 31 31 H 1.08996 * 109.47144 * 59.99713 * 1 2 3 32 32 H 1.08997 * 109.46587 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99975 * 95.00354 * 4 2 1 34 34 H 0.97000 * 119.99830 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.68260 * 52.49979 * 15 13 2 36 36 H 1.08999 * 109.68056 * 291.98411 * 15 13 2 37 37 H 1.08993 * 109.47438 * 300.00006 * 19 17 16 38 38 H 1.08998 * 109.46742 * 60.00431 * 19 17 16 39 39 H 0.96699 * 114.00130 * 90.00294 * 22 21 20 40 40 H 0.96710 * 113.99553 * 269.98159 * 26 25 24 41 41 H 1.08998 * 109.67987 * 170.26585 * 27 16 15 42 42 H 1.09005 * 109.67921 * 290.80906 * 27 16 15 43 43 H 1.09003 * 109.51258 * 67.62584 * 28 27 16 44 44 H 1.09002 * 109.51282 * 187.72484 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6124 -0.6618 3.5089 8 7 2.7386 -0.0051 4.6426 9 14 3.0580 -2.4739 3.4246 10 1 4.4907 -2.6150 3.0606 11 1 2.8189 -3.1045 4.7477 12 1 2.2184 -3.1429 2.3985 13 6 2.0400 -0.7211 -1.2493 14 1 1.7504 -0.1604 -2.1380 15 6 3.5678 -0.8317 -1.1889 16 7 4.0162 -1.6869 -2.2992 17 6 4.9967 -1.2852 -3.1322 18 8 5.5235 -0.2046 -2.9720 19 6 5.4390 -2.1792 -4.2619 20 7 6.5081 -1.5201 -5.0162 21 6 6.3404 -0.7011 -6.0936 22 8 5.1552 -0.3535 -6.6537 23 7 7.5239 -0.3065 -6.4903 24 7 8.4790 -0.8945 -5.6505 25 6 7.8449 -1.6234 -4.7671 26 8 8.4172 -2.3530 -3.7773 27 6 3.3622 -2.9935 -2.4736 28 6 1.8444 -2.7786 -2.4717 29 8 1.4759 -2.0343 -1.3081 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1525 34 1 3.0619 -0.4624 5.4345 35 1 3.8665 -1.2760 -0.2395 36 1 4.0116 0.1591 -1.2863 37 1 5.8075 -3.1215 -3.8566 38 1 4.5947 -2.3735 -4.9233 39 1 4.7617 0.4457 -6.2775 40 1 8.6302 -3.2615 -4.0312 41 1 3.6695 -3.4342 -3.4220 42 1 3.6402 -3.6556 -1.6535 43 1 1.5540 -2.2253 -3.3649 44 1 1.3399 -3.7447 -2.4618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725322428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:23 Heat of formation + Delta-G solvation = -65.427351 kcal Electronic energy + Delta-G solvation = -31012.700300 eV Core-core repulsion = 26582.101550 eV Total energy + Delta-G solvation = -4430.598750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.43882 -41.51479 -39.75193 -39.19606 -38.10070 -37.29316 -35.93188 -35.47607 -34.23477 -32.10301 -30.73911 -30.66303 -29.97180 -28.14607 -25.68599 -24.90752 -23.92460 -23.84584 -23.02758 -21.45022 -20.78961 -19.94462 -19.88593 -19.53354 -18.76895 -18.05089 -17.56505 -17.48007 -16.87725 -16.71682 -16.43657 -16.35716 -16.12376 -15.91694 -15.31330 -15.08951 -14.78900 -14.57592 -14.48950 -14.31424 -13.95698 -13.72966 -13.54997 -13.41963 -13.36668 -13.07247 -12.87078 -12.58587 -12.55279 -12.49172 -12.08235 -11.93370 -11.80970 -11.74747 -11.64280 -11.55866 -11.16998 -11.00930 -10.77807 -10.59250 -9.73755 -9.28727 -8.01448 -5.33787 0.32079 0.68787 1.08889 1.25990 1.35496 1.39063 1.47219 1.65830 2.16648 2.48526 2.74494 2.76699 3.11748 3.31398 3.38778 3.52352 3.73870 3.87094 3.91993 3.95312 4.08261 4.12640 4.17590 4.23280 4.34662 4.46113 4.60869 4.61615 4.73679 4.77219 4.85187 4.98016 5.02429 5.11376 5.20098 5.23298 5.57356 5.78333 6.10456 6.16402 6.19805 6.26924 6.39274 6.74053 6.81807 7.09441 7.85055 8.05307 9.20359 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.003121 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.393503 B = 8969.977336 C = 9707.072734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.176 3.824 3 H 0.057 0.943 4 N -0.743 5.743 5 C -0.224 4.224 6 H 0.057 0.943 7 C -0.065 4.065 8 N -0.986 5.986 9 Si 0.951 3.049 10 H -0.282 1.282 11 H -0.298 1.298 12 H -0.248 1.248 13 C 0.095 3.905 14 H 0.086 0.914 15 C 0.091 3.909 16 N -0.603 5.603 17 C 0.496 3.504 18 O -0.579 6.579 19 C 0.088 3.912 20 N -0.495 5.495 21 C 0.425 3.575 22 O -0.431 6.431 23 N -0.338 5.338 24 N -0.341 5.341 25 C 0.426 3.574 26 O -0.437 6.437 27 C 0.061 3.939 28 C 0.038 3.962 29 O -0.386 6.386 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.368 0.632 34 H 0.256 0.744 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.167 0.833 38 H 0.173 0.827 39 H 0.432 0.568 40 H 0.437 0.563 41 H 0.142 0.858 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 -13.733 -25.865 29.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.067 3.933 3 H 0.075 0.925 4 N -0.387 5.387 5 C -0.355 4.355 6 H 0.075 0.925 7 C -0.257 4.257 8 N -0.637 5.637 9 Si 0.778 3.222 10 H -0.209 1.209 11 H -0.225 1.225 12 H -0.172 1.172 13 C 0.036 3.964 14 H 0.103 0.897 15 C -0.033 4.033 16 N -0.336 5.336 17 C 0.283 3.717 18 O -0.458 6.458 19 C -0.038 4.038 20 N -0.215 5.215 21 C 0.114 3.886 22 O -0.234 6.234 23 N -0.181 5.181 24 N -0.185 5.185 25 C 0.115 3.885 26 O -0.241 6.241 27 C -0.060 4.060 28 C -0.039 4.039 29 O -0.305 6.305 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.202 0.798 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.184 0.816 38 H 0.190 0.810 39 H 0.294 0.706 40 H 0.301 0.699 41 H 0.160 0.840 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.496 -12.365 -26.335 29.132 hybrid contribution -0.567 -0.998 1.792 2.128 sum 0.928 -13.363 -24.543 27.960 Atomic orbital electron populations 1.22132 0.96500 1.01661 1.00543 1.20478 0.93944 0.94676 0.84172 0.92513 1.42691 1.79734 1.09575 1.06685 1.19028 1.34659 0.94326 0.87496 0.92521 1.25458 1.02608 1.02381 0.95204 1.69886 1.54904 1.37687 1.01208 0.85462 0.78370 0.81238 0.77097 1.20863 1.22537 1.17211 1.22571 0.90342 0.85076 0.98429 0.89669 1.22100 0.95702 0.96244 0.89240 1.48240 1.36348 1.19958 1.29089 1.21341 0.79178 0.87364 0.83791 1.90802 1.56099 1.25063 1.73824 1.22152 0.92428 0.96109 0.93075 1.46660 1.07642 1.41779 1.25443 1.21305 0.89227 0.92469 0.85572 1.84861 1.28706 1.51005 1.58840 1.78240 0.96534 1.21531 1.21834 1.78249 1.20582 1.14245 1.05409 1.21321 0.80017 0.96604 0.90512 1.85020 1.77571 1.30898 1.30621 1.22950 0.94152 0.82990 1.05925 1.23304 0.93574 0.98574 0.88454 1.88074 1.71247 1.26683 1.44493 0.94991 0.91103 0.92590 0.79804 0.93516 0.91968 0.90450 0.81608 0.81004 0.70589 0.69938 0.84018 0.89843 0.90840 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.30 71.98 0.67 -4.10 16 2 C 0.18 6.14 2.80 44.99 0.13 6.27 16 3 H 0.06 2.11 8.08 -2.38 -0.02 2.09 16 4 N -0.74 -32.98 4.05 -322.95 -1.31 -34.28 16 5 C -0.22 -12.49 10.41 84.03 0.87 -11.61 16 6 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 7 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 8 N -0.99 -63.33 13.97 21.65 0.30 -63.03 16 9 Si 0.95 44.98 27.74 68.60 1.90 46.88 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.25 -10.50 6.52 99.48 0.65 -9.85 16 13 C 0.10 2.47 2.57 30.69 0.08 2.55 16 14 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 15 C 0.09 2.55 5.82 86.36 0.50 3.05 16 16 N -0.60 -11.05 3.02 -817.35 -2.47 -13.52 16 17 C 0.50 9.48 7.78 87.66 0.68 10.16 16 18 O -0.58 -17.94 15.90 -3.02 -0.05 -17.98 16 19 C 0.09 0.72 4.87 85.63 0.42 1.14 16 20 N -0.50 -8.18 2.25 -759.27 -1.71 -9.88 16 21 C 0.43 8.40 9.15 179.72 1.65 10.05 16 22 O -0.43 -5.41 13.57 -89.36 -1.21 -6.63 16 23 N -0.34 -9.25 12.72 -173.66 -2.21 -11.45 16 24 N -0.34 -9.49 12.72 -173.66 -2.21 -11.70 16 25 C 0.43 8.85 9.15 179.72 1.65 10.50 16 26 O -0.44 -6.44 13.58 -89.41 -1.21 -7.66 16 27 C 0.06 0.54 6.54 86.35 0.56 1.11 16 28 C 0.04 0.41 6.99 72.08 0.50 0.92 16 29 O -0.39 -8.95 9.25 -148.98 -1.38 -10.33 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.80 7.57 -2.39 -0.02 1.78 16 33 H 0.37 15.94 4.94 -92.71 -0.46 15.48 16 34 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.06 2.14 6.94 -2.39 -0.02 2.13 16 36 H 0.08 2.55 7.08 -2.39 -0.02 2.53 16 37 H 0.17 0.10 8.02 -2.39 -0.02 0.09 16 38 H 0.17 0.01 7.65 -2.39 -0.02 -0.01 16 39 H 0.43 2.37 9.06 -74.06 -0.67 1.70 16 40 H 0.44 0.41 9.06 -74.05 -0.67 -0.26 16 41 H 0.14 -0.27 6.05 -2.39 -0.01 -0.28 16 42 H 0.08 0.86 8.14 -2.38 -0.02 0.85 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -94.16 370.05 -4.14 -98.30 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -0.77 Total: 14.61 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 8.18 Total: 26.66 kcal Atomic # 7 Polarization: -134.27 SS G_CDS: -9.60 Total: -143.87 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -3.85 Total: -42.60 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.88 kcal Total: -94.16 -4.14 -98.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725322428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.874 kcal (2) G-P(sol) polarization free energy of solvation -94.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds