Wall clock time and date at job start Tue Mar 31 2020 23:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47375 * 2 1 4 4 N 1.46496 * 109.47035 * 120.00632 * 2 1 3 5 5 C 1.34778 * 119.99599 * 274.99626 * 4 2 1 6 6 O 1.21781 * 120.00272 * 0.02562 * 5 4 2 7 7 C 1.41498 * 120.00140 * 179.97438 * 5 4 2 8 8 C 1.35446 * 120.00268 * 180.02562 * 7 5 4 9 9 C 1.46382 * 120.00222 * 180.02562 * 8 7 5 10 10 C 1.36671 * 126.78456 * 0.02638 * 9 8 7 11 11 N 1.35600 * 109.69744 * 179.97438 * 10 9 8 12 12 C 1.46495 * 124.78236 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47303 * 264.95758 * 12 11 10 14 14 H 1.08003 * 120.00322 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00640 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99365 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00628 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46957 * 59.99942 * 17 15 13 19 19 H 1.48498 * 109.47524 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47041 * 300.00181 * 17 15 13 21 21 C 1.37996 * 110.43883 * 359.97438 * 11 10 9 22 22 C 1.39126 * 133.12884 * 179.70764 * 21 11 10 23 23 C 1.37781 * 119.92733 * 179.83429 * 22 21 11 24 24 C 1.38738 * 120.62991 * 0.49783 * 23 22 21 25 25 C 1.37776 * 120.29846 * 359.74825 * 24 23 22 26 26 C 1.39249 * 119.67741 * 0.02562 * 25 24 23 27 27 C 1.50707 * 109.47155 * 240.00283 * 2 1 3 28 28 N 1.34774 * 120.00129 * 59.99853 * 27 2 1 29 29 O 1.21283 * 120.00094 * 240.00268 * 27 2 1 30 30 H 1.09003 * 109.47105 * 300.00065 * 1 2 3 31 31 H 1.09004 * 109.47016 * 59.99511 * 1 2 3 32 32 H 1.08998 * 109.46872 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00646 * 95.00190 * 4 2 1 34 34 H 1.08007 * 119.99665 * 0.02562 * 7 5 4 35 35 H 1.07999 * 120.00397 * 0.02562 * 8 7 5 36 36 H 1.08005 * 125.15017 * 359.94291 * 10 9 8 37 37 H 1.09001 * 109.47464 * 24.95764 * 12 11 10 38 38 H 1.09001 * 109.47688 * 144.95836 * 12 11 10 39 39 H 0.97004 * 119.99576 * 180.02562 * 16 15 13 40 40 H 1.07997 * 120.03578 * 0.32433 * 22 21 11 41 41 H 1.07999 * 119.68222 * 180.24222 * 23 22 21 42 42 H 1.08001 * 119.85134 * 179.72667 * 24 23 22 43 43 H 1.08000 * 120.16115 * 180.02562 * 25 24 23 44 44 H 0.97004 * 119.99439 * 0.02562 * 28 27 2 45 45 H 0.96992 * 120.00378 * 180.02562 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8571 1.1631 2.4119 7 6 2.6182 -0.6856 3.5125 8 6 2.7471 -0.0101 4.6794 9 6 3.2350 -0.7001 5.8746 10 6 3.5986 -2.0142 5.9698 11 7 3.9981 -2.2872 7.2366 12 6 4.4579 -3.5973 7.7038 13 6 3.3043 -4.3430 8.3234 14 1 2.3262 -3.8868 8.3647 15 6 3.4970 -5.6080 8.8368 16 7 4.6880 -6.1637 8.7860 17 14 2.0668 -6.5326 9.6042 18 1 0.9956 -6.7155 8.5923 19 1 2.5329 -7.8606 10.0779 20 1 1.5351 -5.7564 10.7532 21 6 3.9116 -1.1568 8.0234 22 6 4.1900 -0.9071 9.3634 23 6 4.0044 0.3566 9.8802 24 6 3.5312 1.3855 9.0788 25 6 3.2449 1.1566 7.7506 26 6 3.4323 -0.1146 7.2141 27 6 2.0324 -0.7104 -1.2306 28 7 1.7068 -0.2499 -2.4546 29 8 2.7296 -1.6965 -1.1193 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6318 1.1525 34 1 2.8750 -1.7335 3.4640 35 1 2.4899 1.0377 4.7281 36 1 3.5714 -2.7272 5.1591 37 1 4.8481 -4.1674 6.8606 38 1 5.2444 -3.4628 8.4464 39 1 4.8235 -7.0539 9.1468 40 1 4.5588 -1.7010 9.9959 41 1 4.2256 0.5470 10.9200 42 1 3.3861 2.3702 9.4980 43 1 2.8770 1.9593 7.1287 44 1 1.1494 0.5390 -2.5435 45 1 2.0298 -0.7073 -3.2466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053395607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:44 Heat of formation + Delta-G solvation = -31.783326 kcal Electronic energy + Delta-G solvation = -27821.719041 eV Core-core repulsion = 23803.428468 eV Total energy + Delta-G solvation = -4018.290573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23095 -41.37200 -40.09930 -37.97612 -36.18145 -35.74814 -34.83528 -34.73716 -32.65683 -31.32775 -31.17506 -29.67790 -28.40693 -26.18789 -25.28334 -24.21290 -23.35267 -22.15806 -21.52050 -21.23933 -19.86085 -18.87275 -18.85727 -18.50797 -17.68578 -17.31372 -17.01412 -16.62607 -16.43318 -16.27040 -16.09706 -15.72377 -15.58074 -15.17849 -14.88761 -14.73501 -14.60933 -14.34731 -14.21719 -13.78588 -13.64861 -13.40341 -13.31887 -13.16801 -12.73201 -12.71784 -12.65554 -12.50458 -12.30448 -12.28586 -11.88685 -11.68153 -11.18083 -11.13108 -10.99908 -10.77334 -10.73118 -10.23156 -9.93876 -9.10342 -8.47677 -8.14458 -6.54972 -0.18108 0.43466 0.86013 1.36322 1.36867 1.45786 1.47661 1.88785 2.07071 2.10993 2.33228 2.58935 2.68429 2.93638 3.08779 3.74790 3.80697 3.84951 3.93348 4.03405 4.13269 4.17301 4.30882 4.37313 4.38588 4.59390 4.66406 4.72218 4.74496 4.80949 4.85416 4.89495 4.98730 5.13135 5.20962 5.34460 5.41924 5.50492 5.53039 5.68382 5.74532 5.76962 5.83370 5.86364 6.02513 6.31687 6.34555 6.41867 6.55506 6.61176 7.17482 7.22624 7.27272 8.68800 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009736 B = 0.002567 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.306457 B =10907.007531 C =13037.762866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.121 3.879 3 H 0.116 0.884 4 N -0.714 5.714 5 C 0.566 3.434 6 O -0.589 6.589 7 C -0.281 4.281 8 C 0.076 3.924 9 C -0.214 4.214 10 C 0.107 3.893 11 N -0.455 5.455 12 C 0.248 3.752 13 C -0.556 4.556 14 H 0.053 0.947 15 C 0.024 3.976 16 N -0.918 5.918 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.271 1.271 21 C 0.064 3.936 22 C -0.135 4.135 23 C -0.108 4.108 24 C -0.138 4.138 25 C -0.089 4.089 26 C -0.104 4.104 27 C 0.517 3.483 28 N -0.825 5.825 29 O -0.583 6.583 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.412 0.588 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.187 0.813 37 H 0.040 0.960 38 H 0.026 0.974 39 H 0.273 0.727 40 H 0.106 0.894 41 H 0.150 0.850 42 H 0.157 0.843 43 H 0.142 0.858 44 H 0.421 0.579 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.180 14.802 -15.966 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.013 3.987 3 H 0.134 0.866 4 N -0.367 5.367 5 C 0.360 3.640 6 O -0.473 6.473 7 C -0.302 4.302 8 C 0.055 3.945 9 C -0.221 4.221 10 C -0.028 4.028 11 N -0.130 5.130 12 C 0.128 3.872 13 C -0.594 4.594 14 H 0.071 0.929 15 C -0.178 4.178 16 N -0.556 5.556 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.197 1.197 21 C -0.041 4.041 22 C -0.155 4.155 23 C -0.127 4.127 24 C -0.157 4.157 25 C -0.108 4.108 26 C -0.108 4.108 27 C 0.301 3.699 28 N -0.390 5.390 29 O -0.463 6.463 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.204 0.796 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.167 0.833 42 H 0.175 0.825 43 H 0.160 0.840 44 H 0.253 0.747 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.715 14.500 -15.523 22.278 hybrid contribution -0.218 -1.529 0.157 1.552 sum -6.933 12.971 -15.366 21.270 Atomic orbital electron populations 1.22127 0.91189 1.03370 1.04528 1.20867 0.96915 0.97915 0.83033 0.86633 1.45683 1.67569 1.14854 1.08562 1.17007 0.76922 0.86138 0.83918 1.90767 1.53475 1.16998 1.86107 1.21560 1.13394 1.02055 0.93223 1.21521 0.85891 0.98406 0.88682 1.19029 1.16689 0.93024 0.93342 1.22624 0.96091 0.96680 0.87363 1.44529 1.50735 1.09581 1.08167 1.19358 0.95232 0.76893 0.95691 1.21444 0.95676 1.01404 1.40880 0.92890 1.25720 0.98716 0.97754 0.95582 1.69999 1.23224 1.16646 1.45711 0.85472 0.78922 0.77659 0.78915 1.19304 1.20008 1.19655 1.18715 1.04588 0.86708 0.94115 1.20346 1.04628 0.98682 0.91872 1.21102 0.99599 0.91059 1.00929 1.21246 1.01126 1.00142 0.93145 1.20727 0.99765 0.94289 0.95972 1.19352 1.04226 0.94281 0.92970 1.20688 0.79024 0.83703 0.86463 1.43569 1.54842 1.33912 1.06702 1.90761 1.39818 1.28326 1.87350 0.92038 0.87784 0.91884 0.75081 0.84831 0.84966 0.79650 0.94150 0.95579 0.91798 0.87565 0.83274 0.82530 0.83983 0.74735 0.75491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.38 71.98 0.68 -1.29 16 2 C 0.12 2.08 2.98 44.25 0.13 2.21 16 3 H 0.12 1.98 7.58 -2.39 -0.02 1.97 16 4 N -0.71 -16.23 4.94 -455.16 -2.25 -18.48 16 5 C 0.57 15.72 7.52 85.04 0.64 16.36 16 6 O -0.59 -19.10 15.77 -4.61 -0.07 -19.17 16 7 C -0.28 -7.80 9.32 22.43 0.21 -7.59 16 8 C 0.08 2.30 9.68 23.75 0.23 2.53 16 9 C -0.21 -7.49 6.24 -19.08 -0.12 -7.61 16 10 C 0.11 4.03 10.65 83.74 0.89 4.92 16 11 N -0.45 -19.92 2.73 -518.94 -1.42 -21.34 16 12 C 0.25 12.33 5.71 85.63 0.49 12.82 16 13 C -0.56 -29.89 9.39 25.60 0.24 -29.65 16 14 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 15 C 0.02 1.26 5.46 84.65 0.46 1.72 16 16 N -0.92 -51.01 13.29 21.45 0.28 -50.73 16 17 Si 0.97 42.20 29.54 68.60 2.03 44.23 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 19 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 C 0.06 2.66 6.79 38.91 0.26 2.93 16 22 C -0.14 -5.17 9.97 22.37 0.22 -4.95 16 23 C -0.11 -3.21 10.01 22.28 0.22 -2.99 16 24 C -0.14 -3.66 10.03 22.28 0.22 -3.44 16 25 C -0.09 -2.67 10.09 22.40 0.23 -2.45 16 26 C -0.10 -3.84 6.36 -20.07 -0.13 -3.97 16 27 C 0.52 8.68 7.49 87.66 0.66 9.33 16 28 N -0.83 -5.75 8.77 -173.53 -1.52 -7.27 16 29 O -0.58 -15.18 16.67 -3.04 -0.05 -15.23 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 0.55 7.57 -2.38 -0.02 0.54 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.41 9.17 7.75 -92.71 -0.72 8.45 16 34 H 0.13 3.33 6.88 -2.91 -0.02 3.31 16 35 H 0.13 3.87 7.45 -2.91 -0.02 3.85 16 36 H 0.19 5.96 7.19 -2.91 -0.02 5.94 16 37 H 0.04 2.05 8.11 -2.39 -0.02 2.03 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 43 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 44 H 0.42 0.13 8.25 -92.71 -0.76 -0.63 16 45 H 0.41 2.17 8.93 -92.71 -0.83 1.34 16 Total: -1.00 -72.54 392.55 1.29 -71.26 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -1.25 Total: 27.84 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.54 Total: -11.11 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -4.90 Total: -97.81 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.12 Total: -34.40 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -72.54 1.29 -71.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053395607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.473 kcal (2) G-P(sol) polarization free energy of solvation -72.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds