Wall clock time and date at job start Wed Apr 1 2020 01:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99736 * 2 1 4 4 C 1.52995 * 109.47425 * 274.99815 * 3 2 1 5 5 O 1.42903 * 109.46972 * 65.00259 * 4 3 2 6 6 C 1.42893 * 113.99793 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 89.99993 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97930 * 7 6 5 13 13 S 1.65594 * 119.99787 * 179.97438 * 2 1 3 14 14 O 1.42098 * 104.27934 * 26.07282 * 13 2 1 15 15 O 1.42106 * 104.27567 * 153.93024 * 13 2 1 16 16 C 1.81399 * 104.45306 * 269.99992 * 13 2 1 17 17 C 1.52993 * 109.47519 * 180.02562 * 16 13 2 18 18 C 1.52995 * 109.47223 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47192 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99905 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00211 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99854 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99826 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46794 * 89.99633 * 23 21 19 25 25 H 1.48494 * 109.46936 * 209.99624 * 23 21 19 26 26 H 1.48502 * 109.47015 * 329.99795 * 23 21 19 27 27 H 1.09000 * 109.47209 * 89.99516 * 1 2 3 28 28 H 1.08995 * 109.47245 * 210.00040 * 1 2 3 29 29 H 1.09004 * 109.47076 * 329.99788 * 1 2 3 30 30 H 1.09006 * 109.46616 * 154.99769 * 3 2 1 31 31 H 1.08996 * 109.47372 * 35.00340 * 3 2 1 32 32 H 1.09005 * 109.47112 * 305.00329 * 4 3 2 33 33 H 1.08993 * 109.47202 * 185.00432 * 4 3 2 34 34 H 1.09005 * 109.47744 * 60.00256 * 6 5 4 35 35 H 1.09000 * 109.47353 * 299.99456 * 6 5 4 36 36 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 40 40 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 41 41 H 1.09000 * 109.47302 * 300.00648 * 16 13 2 42 42 H 1.09004 * 109.46842 * 59.99960 * 16 13 2 43 43 H 1.09000 * 109.47251 * 299.99941 * 17 16 13 44 44 H 1.09004 * 109.47289 * 59.99997 * 17 16 13 45 45 H 1.09005 * 109.47513 * 299.99805 * 18 17 16 46 46 H 1.08997 * 109.47404 * 60.00360 * 18 17 16 47 47 H 0.96998 * 119.99197 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3437 1.7733 -1.4369 5 8 1.0530 2.0820 -1.9670 6 6 1.0771 2.5639 -3.3120 7 6 -0.3299 2.8553 -3.7665 8 6 -0.8732 4.1113 -3.5710 9 6 -2.1636 4.3788 -3.9884 10 6 -2.9105 3.3905 -4.6019 11 6 -2.3691 2.1330 -4.7926 12 6 -1.0770 1.8668 -4.3794 13 16 2.2930 -1.4341 0.0006 14 8 1.3969 -2.3564 -0.6042 15 8 3.5395 -1.1194 -0.6047 16 6 2.5193 -1.8254 1.7574 17 6 3.2819 -3.1449 1.8919 18 6 3.4722 -3.4752 3.3736 19 6 4.2227 -4.7753 3.5061 20 1 4.5326 -5.3125 2.6219 21 6 4.5139 -5.2790 4.7562 22 7 5.1685 -6.4139 4.8717 23 14 3.9773 -4.3503 6.2856 24 1 2.6228 -4.8047 6.6908 25 1 4.9378 -4.6135 7.3870 26 1 3.9446 -2.8944 5.9946 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.1858 1.1177 0.4344 31 1 1.6502 2.0043 0.5895 32 1 2.8119 1.0011 -2.0473 33 1 2.9640 2.6695 -1.4460 34 1 1.5189 1.8078 -3.9611 35 1 1.6712 3.4765 -3.3604 36 1 -0.2895 4.8837 -3.0921 37 1 -2.5882 5.3599 -3.8353 38 1 -3.9185 3.5997 -4.9283 39 1 -2.9541 1.3595 -5.2679 40 1 -0.6523 0.8858 -4.5328 41 1 3.0866 -1.0278 2.2372 42 1 1.5451 -1.9178 2.2375 43 1 2.7149 -3.9428 1.4121 44 1 4.2561 -3.0522 1.4119 45 1 4.0389 -2.6775 3.8539 46 1 2.4978 -3.5683 3.8532 47 1 5.3729 -6.7683 5.7512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152828310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:34 Heat of formation + Delta-G solvation = -98.429067 kcal Electronic energy + Delta-G solvation = -27034.401375 eV Core-core repulsion = 23116.372026 eV Total energy + Delta-G solvation = -3918.029349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.71473 -38.24394 -36.98836 -36.14213 -35.71448 -34.80847 -32.38253 -32.21517 -31.23972 -29.91984 -28.37955 -26.53331 -25.58916 -23.58407 -22.92275 -22.74553 -21.63601 -20.43882 -18.81285 -17.71528 -17.28371 -16.97392 -16.72491 -16.44154 -16.15710 -15.96836 -15.69491 -15.23763 -14.75687 -14.50575 -14.20744 -14.09132 -13.73468 -13.67596 -13.29478 -12.98468 -12.88008 -12.73098 -12.46244 -12.43857 -12.35298 -12.13194 -11.90255 -11.82913 -11.62067 -11.56558 -11.43292 -11.29235 -11.20071 -10.97854 -10.95064 -10.10132 -9.88365 -9.88190 -9.73524 -9.29149 -9.25630 -9.21273 -8.98940 -8.59278 -6.08976 -4.08240 0.36866 0.92002 1.06645 2.69827 3.20811 3.26150 3.33675 3.35674 3.75201 3.96004 4.24489 4.39767 4.45463 4.46602 4.50195 4.66779 4.77040 4.88060 4.90057 5.02817 5.03783 5.04939 5.11826 5.16145 5.21339 5.24777 5.29684 5.31523 5.50701 5.61039 5.62555 5.69851 5.74374 5.86967 5.89903 6.09999 6.12525 6.16515 6.25590 6.26203 6.44444 6.63577 6.66391 6.90964 7.11989 7.25934 7.70482 8.47115 8.95423 9.52113 11.04275 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027521 B = 0.001960 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.158616 B =14279.213535 C =14305.307387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -1.003 6.003 3 C 0.130 3.870 4 C 0.040 3.960 5 O -0.375 6.375 6 C 0.100 3.900 7 C -0.088 4.088 8 C -0.100 4.100 9 C -0.125 4.125 10 C -0.116 4.116 11 C -0.123 4.123 12 C -0.098 4.098 13 S 2.598 3.402 14 O -0.955 6.955 15 O -0.959 6.959 16 C -0.617 4.617 17 C -0.098 4.098 18 C -0.005 4.005 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.067 3.933 22 N -0.900 5.900 23 Si 0.880 3.120 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.020 0.980 46 H 0.016 0.984 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 24.940 -16.603 32.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.839 5.839 3 C 0.004 3.996 4 C -0.039 4.039 5 O -0.294 6.294 6 C 0.024 3.976 7 C -0.088 4.088 8 C -0.118 4.118 9 C -0.143 4.143 10 C -0.134 4.134 11 C -0.141 4.141 12 C -0.116 4.116 13 S 2.694 3.306 14 O -0.946 6.946 15 O -0.949 6.949 16 C -0.748 4.748 17 C -0.137 4.137 18 C -0.043 4.043 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.134 4.134 22 N -0.538 5.538 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.191 1.191 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.646 24.349 -17.156 32.763 hybrid contribution -0.138 0.619 1.459 1.591 sum -13.784 24.969 -15.697 32.555 Atomic orbital electron populations 1.21372 0.78005 1.02162 1.02527 1.57527 1.15499 1.20880 1.90036 1.21304 0.97342 0.85731 0.95255 1.23098 0.85184 0.99611 0.95958 1.87967 1.28636 1.85580 1.27222 1.21303 0.93334 0.98528 0.84422 1.19623 0.95610 0.94148 0.99432 1.21058 0.95503 0.96417 0.98796 1.21145 0.94519 0.99441 0.99198 1.21207 0.99827 0.93491 0.98893 1.21181 0.95478 0.97070 1.00334 1.21133 0.94247 0.98763 0.97446 1.05509 0.73770 0.72902 0.78413 1.93574 1.64586 1.62179 1.74220 1.93560 1.44125 1.82945 1.74310 1.30655 1.10517 1.09352 1.24266 1.21310 0.98763 0.90837 1.02788 1.19531 0.96861 0.97618 0.90303 1.21138 1.35966 1.05067 0.94352 0.90729 1.25032 0.94585 0.94757 0.99065 1.69915 1.40386 1.19564 1.23979 0.86772 0.78673 0.80901 0.82890 1.20212 1.21259 1.19069 0.92146 0.91545 0.91306 0.88398 0.89543 0.92043 0.92247 0.92427 0.92519 0.86025 0.85997 0.86063 0.85850 0.85813 0.85511 0.85464 0.91037 0.90993 0.96183 0.96614 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 9.58 59.85 0.57 1.64 16 2 N -1.00 -11.26 3.10 -121.76 -0.38 -11.64 16 3 C 0.13 1.19 5.72 -4.04 -0.02 1.16 16 4 C 0.04 0.38 6.28 37.16 0.23 0.61 16 5 O -0.37 -3.83 9.54 -35.23 -0.34 -4.16 16 6 C 0.10 0.86 6.06 36.01 0.22 1.08 16 7 C -0.09 -0.78 5.51 -104.62 -0.58 -1.36 16 8 C -0.10 -0.79 9.70 -39.58 -0.38 -1.17 16 9 C -0.13 -0.89 10.05 -39.58 -0.40 -1.29 16 10 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 11 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 12 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 13 S 2.60 37.69 5.32 -107.50 -0.57 37.12 16 14 O -0.96 -16.76 17.09 -57.54 -0.98 -17.75 16 15 O -0.96 -15.92 16.76 -57.54 -0.96 -16.89 16 16 C -0.62 -8.93 6.18 37.15 0.23 -8.70 16 17 C -0.10 -1.91 5.16 -26.74 -0.14 -2.05 16 18 C 0.00 -0.11 4.04 -27.89 -0.11 -0.22 16 19 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 20 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 23 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 27 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 28 H 0.07 0.64 7.79 -51.93 -0.40 0.23 16 29 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 30 H 0.10 0.79 7.61 -51.93 -0.40 0.40 16 31 H 0.09 0.62 7.96 -51.93 -0.41 0.21 16 32 H 0.06 0.68 7.91 -51.93 -0.41 0.27 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 36 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 37 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.13 1.56 8.14 -51.92 -0.42 1.14 16 42 H 0.13 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 46 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 402.69 15.07 6.07 6.07 Total: -1.00 -36.02 402.69 -10.92 -46.95 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.87 Total: -1.90 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -1.99 Total: -27.63 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.40 Total: -38.57 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -2.28 Total: -38.80 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 37.69 SS G_CDS: -0.57 Total: 37.12 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.02 -10.92 -46.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152828310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.483 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds