Wall clock time and date at job start Tue Mar 31 2020 23:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35681 * 117.00063 * 2 1 4 4 C 1.38892 * 119.62474 * 179.97438 * 3 2 1 5 5 C 1.39577 * 118.94995 * 179.97438 * 4 3 2 6 6 C 1.48160 * 120.89200 * 180.02562 * 5 4 3 7 7 O 1.21513 * 120.00101 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99584 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72357 * 8 6 5 10 10 C 1.50703 * 109.47138 * 180.28062 * 9 8 6 11 11 C 1.38233 * 119.99680 * 269.72871 * 10 9 8 12 12 C 1.38240 * 120.00155 * 179.76981 * 11 10 9 13 13 C 1.38241 * 119.99430 * 0.47615 * 12 11 10 14 14 C 1.50695 * 119.99655 * 179.77268 * 13 12 11 15 15 N 1.46502 * 109.47431 * 270.02262 * 14 13 12 16 16 C 1.36936 * 120.00293 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99933 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00060 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99978 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00063 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47176 * 89.99693 * 20 18 16 22 22 H 1.48506 * 109.46863 * 209.99920 * 20 18 16 23 23 H 1.48504 * 109.47041 * 329.99363 * 20 18 16 24 24 C 1.38233 * 120.00075 * 359.79594 * 13 12 11 25 25 C 1.38231 * 120.00146 * 89.99859 * 10 9 8 26 26 C 1.39967 * 118.21109 * 0.27747 * 5 4 3 27 27 C 1.37969 * 119.13812 * 359.48121 * 26 5 4 28 28 N 1.31913 * 120.97887 * 0.52764 * 27 26 5 29 29 H 1.09003 * 109.46795 * 299.99900 * 1 2 3 30 30 H 1.08995 * 109.47354 * 59.99796 * 1 2 3 31 31 H 1.08994 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.52960 * 359.97438 * 4 3 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 34 34 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 35 35 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 36 36 H 1.08005 * 120.00115 * 359.97438 * 11 10 9 37 37 H 1.07995 * 120.00252 * 180.25669 * 12 11 10 38 38 H 1.09000 * 109.47642 * 30.02444 * 14 13 12 39 39 H 1.08998 * 109.47269 * 150.02425 * 14 13 12 40 40 H 0.97000 * 119.99844 * 0.02562 * 15 14 13 41 41 H 0.96991 * 119.99957 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.00181 * 179.97438 * 24 13 12 43 43 H 1.07994 * 120.00283 * 0.02562 * 25 10 9 44 44 H 1.08001 * 120.42721 * 179.72748 * 26 5 4 45 45 H 1.08005 * 119.51530 * 180.27786 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0515 2.5235 0.0000 6 6 5.5284 2.6415 0.0000 7 8 6.2178 1.6409 0.0000 8 7 6.1071 3.8587 -0.0011 9 6 7.5674 3.9753 0.0050 10 6 7.9550 5.4317 0.0093 11 6 8.1430 6.1003 -1.1858 12 6 8.4939 7.4374 -1.1820 13 6 8.6664 8.1032 0.0172 14 6 9.0539 9.5595 0.0215 15 7 10.5142 9.6763 0.0275 16 6 11.1022 10.9130 0.0327 17 1 10.4894 11.8023 0.0319 18 6 12.4859 11.0236 0.0380 19 7 13.2328 9.9398 0.0385 20 14 13.2880 12.7106 0.0457 21 1 13.4955 13.1535 1.4478 22 1 14.5981 12.6389 -0.6499 23 1 12.4081 13.6803 -0.6547 24 6 8.4838 7.4331 1.2124 25 6 8.1279 6.0973 1.2084 26 6 3.2394 3.6635 0.0049 27 6 1.8681 3.5116 -0.0009 28 7 1.3178 2.3127 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 4.0231 0.3683 0.0014 33 1 5.5568 4.6574 -0.0015 34 1 7.9670 3.4904 0.8958 35 1 7.9741 3.4938 -0.8842 36 1 8.0126 5.5790 -2.1227 37 1 8.6368 7.9609 -2.1157 38 1 8.6544 10.0445 -0.8692 39 1 8.6472 10.0411 0.9107 40 1 11.0646 8.8776 0.0279 41 1 14.1996 10.0171 0.0417 42 1 8.6189 7.9531 2.1492 43 1 7.9857 5.5737 2.1421 44 1 3.6806 4.6493 0.0091 45 1 1.2357 4.3871 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666337607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:58 Heat of formation + Delta-G solvation = 4.246743 kcal Electronic energy + Delta-G solvation = -26997.032381 eV Core-core repulsion = 22980.304189 eV Total energy + Delta-G solvation = -4016.728192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30465 -40.02024 -39.16422 -38.13538 -35.69270 -34.46199 -33.22192 -32.12068 -31.24164 -30.78004 -30.16014 -27.84750 -27.28012 -25.10683 -23.91687 -23.81250 -22.55254 -22.39783 -21.11738 -20.54411 -19.20458 -17.77957 -17.34192 -17.08956 -16.51293 -16.34075 -16.10388 -15.83863 -15.48716 -14.99164 -14.90042 -14.68717 -14.58671 -14.47687 -14.05445 -13.85365 -13.41793 -13.27885 -13.22357 -12.93248 -12.68507 -12.39965 -12.21369 -12.11836 -11.89812 -11.70748 -11.12677 -10.90192 -10.78254 -10.73058 -10.61579 -10.42929 -10.13136 -10.09703 -9.81163 -9.43587 -9.06020 -8.94008 -8.75103 -8.51372 -6.98423 -5.80125 -3.10342 0.21279 0.62543 1.31091 1.58017 2.45103 2.47959 2.92734 3.34764 3.41201 3.46129 3.48123 3.77491 3.91752 4.13809 4.42520 4.47346 4.54719 4.58431 4.65893 4.81694 4.86436 4.88631 5.12748 5.15467 5.17940 5.26022 5.27665 5.32237 5.49817 5.53051 5.53568 5.68097 5.75587 5.78881 6.00402 6.09749 6.11186 6.15094 6.43325 6.53543 6.56860 6.62626 6.69858 7.04629 7.08003 7.16094 7.27197 7.65294 7.75448 8.37460 9.49138 10.04661 10.40277 11.42267 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.034330 B = 0.001557 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.428141 B =17984.721950 C =18485.037892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.318 3.682 4 C -0.132 4.132 5 C -0.051 4.051 6 C 0.557 3.443 7 O -0.526 6.526 8 N -0.713 5.713 9 C 0.165 3.835 10 C -0.128 4.128 11 C -0.102 4.102 12 C -0.106 4.106 13 C -0.062 4.062 14 C 0.184 3.816 15 N -0.727 5.727 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.106 4.106 25 C -0.103 4.103 26 C -0.181 4.181 27 C 0.140 3.860 28 N -0.527 5.527 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.403 0.597 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.144 0.856 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.136 -17.077 -0.120 31.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.139 3.861 4 C -0.154 4.154 5 C -0.062 4.062 6 C 0.343 3.657 7 O -0.402 6.402 8 N -0.365 5.365 9 C 0.043 3.957 10 C -0.128 4.128 11 C -0.121 4.121 12 C -0.125 4.125 13 C -0.063 4.063 14 C 0.057 3.943 15 N -0.371 5.371 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.125 4.125 25 C -0.121 4.121 26 C -0.202 4.202 27 C -0.016 4.016 28 N -0.252 5.252 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.173 0.827 33 H 0.239 0.761 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.161 0.839 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -26.366 -17.971 -0.130 31.909 hybrid contribution 1.146 1.325 0.020 1.752 sum -25.221 -16.646 -0.110 30.219 Atomic orbital electron populations 1.22905 0.76820 1.03229 1.02586 1.86268 1.23197 1.24085 1.87624 1.19697 0.89001 0.84910 0.92450 1.21139 0.91944 0.99163 1.03136 1.20127 0.93734 0.93386 0.98917 1.18078 0.86777 0.83734 0.77148 1.90811 1.64122 1.36366 1.48943 1.46035 1.08204 1.07821 1.74404 1.20241 0.78863 0.93197 1.03372 1.19640 1.04750 0.94527 0.93914 1.21002 0.99452 0.94555 0.97089 1.21136 0.98927 0.94172 0.98250 1.20411 0.95570 0.97504 0.92791 1.19713 0.87373 0.88461 0.98781 1.42332 0.98841 1.06374 1.89556 1.19238 0.89835 0.85181 1.43264 0.91050 1.24762 0.96136 0.97122 1.02755 1.69672 1.04354 1.26552 1.57319 0.86171 0.78843 0.83481 0.77556 1.21653 1.21715 1.20705 1.21133 0.98900 0.94165 0.98285 1.20998 0.99478 0.94593 0.97045 1.22195 0.95027 0.99039 1.03938 1.22403 0.92553 0.93687 0.92913 1.67216 1.41277 0.98955 1.17718 0.92134 0.92122 0.88394 0.82703 0.76065 0.90299 0.90287 0.86250 0.85742 0.95368 0.95371 0.78046 0.93427 0.85746 0.86257 0.83859 0.81492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.38 101.05 1.05 1.28 16 2 O -0.31 -2.72 10.47 -18.74 -0.20 -2.92 16 3 C 0.32 3.00 7.49 -17.16 -0.13 2.87 16 4 C -0.13 -1.27 9.61 -38.84 -0.37 -1.64 16 5 C -0.05 -0.45 5.91 -104.68 -0.62 -1.07 16 6 C 0.56 5.88 7.80 -12.19 -0.10 5.79 16 7 O -0.53 -7.41 16.44 5.35 0.09 -7.32 16 8 N -0.71 -6.26 5.51 -62.33 -0.34 -6.60 16 9 C 0.17 1.67 5.80 -5.19 -0.03 1.64 16 10 C -0.13 -1.45 5.25 -104.62 -0.55 -2.00 16 11 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 12 C -0.11 -1.55 9.70 -39.58 -0.38 -1.93 16 13 C -0.06 -1.01 5.25 -104.62 -0.55 -1.56 16 14 C 0.18 3.61 6.38 -5.19 -0.03 3.58 16 15 N -0.73 -18.24 5.59 -61.09 -0.34 -18.58 16 16 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 20 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 C -0.11 -1.55 9.70 -39.58 -0.38 -1.93 16 25 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 26 C -0.18 -1.16 9.61 -39.03 -0.38 -1.54 16 27 C 0.14 0.90 11.17 -17.62 -0.20 0.70 16 28 N -0.53 -4.54 9.18 -13.38 -0.12 -4.66 16 29 H 0.06 0.34 8.10 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 8.10 -51.93 -0.42 -0.09 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.16 1.51 7.74 -52.49 -0.41 1.10 16 33 H 0.40 2.69 6.60 -40.82 -0.27 2.42 16 34 H 0.08 0.82 8.09 -51.92 -0.42 0.40 16 35 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 37 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.39 10.36 7.66 -40.82 -0.31 10.05 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.14 0.55 6.53 -52.49 -0.34 0.21 16 45 H 0.17 0.55 8.06 -52.48 -0.42 0.13 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -33.87 391.72 -8.93 -42.80 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.93 Total: 8.03 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -3.68 Total: -6.42 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.08 Total: -57.19 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.11 Total: -10.24 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.87 -8.93 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666337607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.045 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds