Wall clock time and date at job start Wed Apr 1 2020 00:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99946 * 2 1 4 4 H 1.48503 * 109.47214 * 270.00097 * 3 2 1 5 5 H 1.48499 * 109.47431 * 30.00067 * 3 2 1 6 6 H 1.48507 * 109.47102 * 150.00247 * 3 2 1 7 7 C 1.38810 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99964 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00331 * 359.97438 * 7 2 1 10 10 C 1.47441 * 126.05816 * 359.96359 * 9 7 2 11 11 C 1.54505 * 107.14962 * 181.65617 * 10 9 7 12 12 C 1.56023 * 102.60831 * 22.84967 * 11 10 9 13 13 H 1.09007 * 112.85761 * 202.92988 * 12 11 10 14 14 C 1.53098 * 106.40063 * 78.38098 * 12 11 10 15 15 C 1.53334 * 110.49962 * 195.29061 * 14 12 11 16 16 N 1.47152 * 107.71391 * 57.56632 * 15 14 12 17 17 C 1.34780 * 121.20879 * 122.69084 * 16 15 14 18 18 O 1.21586 * 120.00173 * 3.34889 * 17 16 15 19 19 C 1.47574 * 119.99885 * 183.35372 * 17 16 15 20 20 C 1.41524 * 120.56686 * 313.15903 * 19 17 16 21 21 N 1.30897 * 120.16649 * 179.97438 * 20 19 17 22 22 C 1.34257 * 121.27656 * 0.02562 * 21 20 19 23 23 N 1.32432 * 131.63569 * 179.97438 * 22 21 20 24 24 C 1.33694 * 109.32305 * 180.02562 * 23 22 21 25 25 C 1.34904 * 108.66078 * 0.02562 * 24 23 22 26 26 N 1.37011 * 107.05844 * 359.97438 * 25 24 23 27 27 C 1.35965 * 132.55838 * 179.97438 * 26 25 24 28 28 C 1.46748 * 117.57782 * 302.42038 * 16 15 14 29 29 C 1.46469 * 126.06645 * 180.02562 * 9 7 2 30 30 H 1.09002 * 108.42064 * 269.20372 * 29 9 7 31 31 H 0.96993 * 119.99860 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.90759 * 301.04443 * 10 9 7 33 33 H 1.09000 * 109.90007 * 62.10270 * 10 9 7 34 34 H 1.09004 * 110.77644 * 141.12701 * 11 10 9 35 35 H 1.08992 * 110.78598 * 264.37754 * 11 10 9 36 36 H 1.09004 * 109.24865 * 315.69672 * 14 12 11 37 37 H 1.08997 * 109.25317 * 75.16552 * 14 12 11 38 38 H 1.09001 * 109.91138 * 298.01707 * 15 14 12 39 39 H 1.08998 * 109.86672 * 177.09222 * 15 14 12 40 40 H 1.08003 * 119.91726 * 359.97438 * 20 19 17 41 41 H 1.08004 * 125.66829 * 180.26329 * 24 23 22 42 42 H 1.07996 * 126.47387 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.57365 * 359.97438 * 27 26 25 44 44 H 1.08992 * 109.22993 * 173.10694 * 28 16 15 45 45 H 1.09007 * 109.22339 * 292.46596 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1405 -2.5437 0.0008 11 6 -0.4376 -4.0593 0.0429 12 6 0.8725 -4.6464 0.6537 13 1 1.0219 -5.6972 0.4050 14 6 0.7984 -4.3919 2.1615 15 6 2.1768 -4.5798 2.8063 16 7 3.1117 -3.6585 2.1409 17 6 3.8049 -2.7398 2.8424 18 8 3.7100 -2.7014 4.0540 19 6 4.6791 -1.7806 2.1400 20 6 5.5757 -2.2237 1.1386 21 7 6.3471 -1.3659 0.5202 22 6 6.3106 -0.0567 0.8152 23 7 6.9858 0.9739 0.3295 24 6 6.5939 2.0915 0.9498 25 6 5.6458 1.7729 1.8551 26 7 5.4573 0.4179 1.7798 27 6 4.6371 -0.4350 2.4495 28 6 3.2662 -3.7804 0.6867 29 6 1.9200 -3.7267 -0.0005 30 1 2.0466 -4.0474 -1.0346 31 1 -0.4849 0.8400 0.0004 32 1 -0.5645 -2.0578 0.8794 33 1 -0.5609 -2.1055 -0.9044 34 1 -1.2920 -4.2681 0.6868 35 1 -0.6079 -4.4482 -0.9610 36 1 0.4522 -3.3733 2.3375 37 1 0.0948 -5.0931 2.6102 38 1 2.5132 -5.6077 2.6705 39 1 2.1234 -4.3463 3.8696 40 1 5.6235 -3.2722 0.8841 41 1 6.9708 3.0848 0.7555 42 1 5.1318 2.4569 2.5141 43 1 3.9648 -0.0669 3.2102 44 1 3.8883 -2.9631 0.3221 45 1 3.7498 -4.7295 0.4555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042154607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:42 Heat of formation + Delta-G solvation = 123.880166 kcal Electronic energy + Delta-G solvation = -31912.426876 eV Core-core repulsion = 27933.179130 eV Total energy + Delta-G solvation = -3979.247746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.88195 -40.33783 -38.52613 -37.57636 -35.09712 -34.41747 -33.25863 -31.72463 -30.74682 -29.19194 -29.11636 -28.54703 -25.30058 -24.69400 -24.34192 -23.40738 -22.46245 -21.71750 -20.28694 -20.10283 -18.69984 -18.53530 -17.60931 -16.87283 -16.47889 -16.19576 -15.92589 -15.39163 -15.04760 -14.84778 -14.30394 -14.14554 -14.00505 -13.96111 -13.68487 -13.56119 -13.03746 -12.86786 -12.75350 -12.29852 -12.10585 -11.76217 -11.67006 -11.59828 -11.33496 -10.99536 -10.91333 -10.82313 -10.60515 -10.21909 -10.17583 -9.95800 -9.90888 -9.77907 -9.67490 -9.53030 -8.95008 -8.72130 -8.36749 -8.01545 -6.94203 -5.83705 -3.16426 0.56312 0.97543 2.33184 2.66359 3.00164 3.24073 3.26586 3.32557 3.37659 3.65600 3.73729 4.32128 4.36135 4.44950 4.63430 4.84168 4.91182 5.11069 5.23475 5.29487 5.31080 5.37370 5.43501 5.51195 5.56335 5.62411 5.66649 5.68641 5.82384 5.85756 6.01194 6.11134 6.17520 6.18484 6.26376 6.42249 6.51334 6.53812 6.56263 6.59657 6.80150 6.89656 7.39791 7.51960 7.58359 7.59580 7.70406 8.01427 8.12052 8.27461 9.07141 9.69737 10.37044 11.27499 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011943 B = 0.006134 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.809848 B = 4563.746030 C = 5935.203264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.003 4.003 3 Si 0.892 3.108 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.218 4.218 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.178 3.822 11 C -0.144 4.144 12 C -0.101 4.101 13 H 0.077 0.923 14 C -0.121 4.121 15 C 0.117 3.883 16 N -0.581 5.581 17 C 0.591 3.409 18 O -0.546 6.546 19 C -0.204 4.204 20 C 0.197 3.803 21 N -0.440 5.440 22 C 0.388 3.612 23 N -0.476 5.476 24 C 0.041 3.959 25 C -0.080 4.080 26 N -0.391 5.391 27 C 0.192 3.808 28 C 0.096 3.904 29 C 0.153 3.847 30 H 0.030 0.970 31 H 0.251 0.749 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.183 0.817 41 H 0.187 0.813 42 H 0.184 0.816 43 H 0.179 0.821 44 H 0.090 0.910 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.242 -6.710 4.977 9.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.723 3.277 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.346 4.346 8 H 0.087 0.913 9 N -0.314 5.314 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.121 4.121 13 H 0.096 0.904 14 C -0.159 4.159 15 C -0.005 4.005 16 N -0.311 5.311 17 C 0.377 3.623 18 O -0.425 6.425 19 C -0.213 4.213 20 C 0.009 3.991 21 N -0.151 5.151 22 C 0.040 3.960 23 N -0.198 5.198 24 C -0.109 4.109 25 C -0.210 4.210 26 N -0.068 5.068 27 C 0.057 3.943 28 C -0.028 4.028 29 C 0.045 3.955 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.200 0.800 41 H 0.204 0.796 42 H 0.201 0.799 43 H 0.196 0.804 44 H 0.108 0.892 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.405 -6.450 4.301 10.056 hybrid contribution -1.113 1.463 0.904 2.048 sum 5.291 -4.987 5.205 8.942 Atomic orbital electron populations 1.69941 1.04756 1.24909 1.56681 1.24702 0.95563 0.97328 1.02380 0.86461 0.78976 0.84175 0.78119 1.21884 1.21950 1.19406 1.18721 0.89748 0.82224 1.43954 0.91308 1.44231 1.01547 0.99060 1.86574 1.21213 0.84034 0.88489 1.00859 1.23150 0.96178 0.99532 0.99327 1.22390 0.97005 0.97808 0.94924 0.90424 1.21915 0.95635 1.03421 0.94975 1.21695 0.88856 0.91905 0.98018 1.47685 1.41412 1.33931 1.08103 1.17292 0.79162 0.79713 0.86125 1.90770 1.66251 1.72201 1.13269 1.20391 1.03967 0.93636 1.03334 1.23358 0.87821 0.99688 0.88224 1.67750 1.23613 0.97698 1.26029 1.21988 0.91928 0.92066 0.90048 1.70656 1.26158 0.96361 1.26622 1.22532 0.96360 0.97809 0.94244 1.22566 1.07204 0.81994 1.09276 1.43820 1.27107 1.08794 1.27042 1.22231 0.90240 0.88377 0.93451 1.21951 1.00027 1.01573 0.79266 1.20679 0.90798 0.88084 0.95972 0.95273 0.93819 0.93665 0.94072 0.92224 0.92675 0.90082 0.91855 0.91504 0.89315 0.79995 0.79649 0.79927 0.80377 0.89160 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.53 10.38 55.49 0.58 -24.95 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 3 Si 0.89 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -5.70 4.08 56.52 0.23 -5.47 16 7 C -0.22 -5.38 9.70 -15.06 -0.15 -5.53 16 8 H 0.07 1.68 5.76 -52.48 -0.30 1.38 16 9 N -0.59 -13.07 3.20 -164.44 -0.53 -13.59 16 10 C 0.18 3.95 4.62 -2.74 -0.01 3.93 16 11 C -0.14 -2.39 6.33 -24.32 -0.15 -2.54 16 12 C -0.10 -1.50 3.68 -88.44 -0.33 -1.82 16 13 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.12 -1.76 5.06 -26.51 -0.13 -1.89 16 15 C 0.12 1.59 6.47 -3.51 -0.02 1.57 16 16 N -0.58 -8.92 2.96 -175.02 -0.52 -9.44 16 17 C 0.59 9.99 7.31 -12.45 -0.09 9.90 16 18 O -0.55 -10.38 16.49 5.29 0.09 -10.29 16 19 C -0.20 -3.35 4.39 -104.88 -0.46 -3.81 16 20 C 0.20 3.01 8.62 -16.70 -0.14 2.87 16 21 N -0.44 -7.84 10.45 -13.37 -0.14 -7.98 16 22 C 0.39 7.30 8.91 -322.23 -2.87 4.43 16 23 N -0.48 -8.90 11.31 -14.41 -0.16 -9.07 16 24 C 0.04 0.62 11.82 -17.92 -0.21 0.41 16 25 C -0.08 -1.19 10.08 -16.42 -0.17 -1.35 16 26 N -0.39 -6.70 2.22 -63.77 -0.14 -6.85 16 27 C 0.19 3.20 10.50 -15.76 -0.17 3.03 16 28 C 0.10 1.42 4.52 -4.79 -0.02 1.40 16 29 C 0.15 2.66 2.96 -68.32 -0.20 2.46 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.05 1.13 7.04 -51.93 -0.37 0.76 16 33 H 0.04 1.04 7.56 -51.93 -0.39 0.65 16 34 H 0.06 0.91 7.97 -51.93 -0.41 0.50 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.50 6.85 -51.93 -0.36 1.15 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.27 7.06 -51.93 -0.37 0.91 16 40 H 0.18 2.14 6.78 -52.48 -0.36 1.78 16 41 H 0.19 2.01 8.06 -52.48 -0.42 1.58 16 42 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.18 2.73 8.06 -52.49 -0.42 2.30 16 44 H 0.09 1.47 2.91 -51.93 -0.15 1.32 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -32.82 348.57 -11.64 -44.46 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.82 Total: 3.67 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: -5.22 Total: 12.88 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -0.91 Total: -71.88 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.82 -11.64 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042154607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.338 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds