Wall clock time and date at job start Wed Apr 1 2020 00:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99946 * 2 1 4 4 H 1.48503 * 109.47214 * 270.00097 * 3 2 1 5 5 H 1.48499 * 109.47431 * 30.00067 * 3 2 1 6 6 H 1.48507 * 109.47102 * 150.00247 * 3 2 1 7 7 C 1.38810 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99964 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00331 * 359.97438 * 7 2 1 10 10 C 1.47441 * 126.05816 * 359.96359 * 9 7 2 11 11 C 1.54505 * 107.14962 * 181.65617 * 10 9 7 12 12 C 1.56023 * 102.60831 * 22.84967 * 11 10 9 13 13 H 1.09007 * 112.85761 * 202.92988 * 12 11 10 14 14 C 1.53098 * 106.40063 * 78.38098 * 12 11 10 15 15 C 1.53334 * 110.49962 * 195.29061 * 14 12 11 16 16 N 1.47152 * 107.71391 * 57.56632 * 15 14 12 17 17 C 1.34780 * 121.20879 * 122.69084 * 16 15 14 18 18 O 1.21586 * 120.00173 * 3.34889 * 17 16 15 19 19 C 1.47574 * 119.99885 * 183.35372 * 17 16 15 20 20 C 1.41524 * 120.56686 * 313.15903 * 19 17 16 21 21 N 1.30897 * 120.16649 * 179.97438 * 20 19 17 22 22 C 1.34257 * 121.27656 * 0.02562 * 21 20 19 23 23 N 1.32432 * 131.63569 * 179.97438 * 22 21 20 24 24 C 1.33694 * 109.32305 * 180.02562 * 23 22 21 25 25 C 1.34904 * 108.66078 * 0.02562 * 24 23 22 26 26 N 1.37011 * 107.05844 * 359.97438 * 25 24 23 27 27 C 1.35965 * 132.55838 * 179.97438 * 26 25 24 28 28 C 1.46748 * 117.57782 * 302.42038 * 16 15 14 29 29 C 1.46469 * 126.06645 * 180.02562 * 9 7 2 30 30 H 1.09002 * 108.42064 * 269.20372 * 29 9 7 31 31 H 0.96993 * 119.99860 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.90759 * 301.04443 * 10 9 7 33 33 H 1.09000 * 109.90007 * 62.10270 * 10 9 7 34 34 H 1.09004 * 110.77644 * 141.12701 * 11 10 9 35 35 H 1.08992 * 110.78598 * 264.37754 * 11 10 9 36 36 H 1.09004 * 109.24865 * 315.69672 * 14 12 11 37 37 H 1.08997 * 109.25317 * 75.16552 * 14 12 11 38 38 H 1.09001 * 109.91138 * 298.01707 * 15 14 12 39 39 H 1.08998 * 109.86672 * 177.09222 * 15 14 12 40 40 H 1.08003 * 119.91726 * 359.97438 * 20 19 17 41 41 H 1.08004 * 125.66829 * 180.26329 * 24 23 22 42 42 H 1.07996 * 126.47387 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.57365 * 359.97438 * 27 26 25 44 44 H 1.08992 * 109.22993 * 173.10694 * 28 16 15 45 45 H 1.09007 * 109.22339 * 292.46596 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1405 -2.5437 0.0008 11 6 -0.4376 -4.0593 0.0429 12 6 0.8725 -4.6464 0.6537 13 1 1.0219 -5.6972 0.4050 14 6 0.7984 -4.3919 2.1615 15 6 2.1768 -4.5798 2.8063 16 7 3.1117 -3.6585 2.1409 17 6 3.8049 -2.7398 2.8424 18 8 3.7100 -2.7014 4.0540 19 6 4.6791 -1.7806 2.1400 20 6 5.5757 -2.2237 1.1386 21 7 6.3471 -1.3659 0.5202 22 6 6.3106 -0.0567 0.8152 23 7 6.9858 0.9739 0.3295 24 6 6.5939 2.0915 0.9498 25 6 5.6458 1.7729 1.8551 26 7 5.4573 0.4179 1.7798 27 6 4.6371 -0.4350 2.4495 28 6 3.2662 -3.7804 0.6867 29 6 1.9200 -3.7267 -0.0005 30 1 2.0466 -4.0474 -1.0346 31 1 -0.4849 0.8400 0.0004 32 1 -0.5645 -2.0578 0.8794 33 1 -0.5609 -2.1055 -0.9044 34 1 -1.2920 -4.2681 0.6868 35 1 -0.6079 -4.4482 -0.9610 36 1 0.4522 -3.3733 2.3375 37 1 0.0948 -5.0931 2.6102 38 1 2.5132 -5.6077 2.6705 39 1 2.1234 -4.3463 3.8696 40 1 5.6235 -3.2722 0.8841 41 1 6.9708 3.0848 0.7555 42 1 5.1318 2.4569 2.5141 43 1 3.9648 -0.0669 3.2102 44 1 3.8883 -2.9631 0.3221 45 1 3.7498 -4.7295 0.4555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042154607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:41 Heat of formation + Delta-G solvation = 104.917256 kcal Electronic energy + Delta-G solvation = -31913.249170 eV Core-core repulsion = 27933.179130 eV Total energy + Delta-G solvation = -3980.070040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.12335 -41.62027 -39.89484 -38.85735 -36.50517 -35.69461 -34.85096 -33.21360 -32.10957 -30.58524 -30.38518 -30.06324 -26.77263 -26.01527 -25.88835 -24.68416 -23.71646 -22.93329 -21.77299 -21.55437 -20.00203 -19.77657 -18.96535 -18.45414 -17.76530 -17.54703 -17.24430 -16.65632 -16.61127 -16.23017 -15.87703 -15.59778 -15.30240 -15.22206 -14.95344 -14.80379 -14.31117 -14.19574 -14.02076 -13.76122 -13.56028 -13.21071 -13.19188 -12.93158 -12.87623 -12.67136 -12.46460 -12.31475 -12.00312 -11.90560 -11.66514 -11.48543 -11.32176 -11.19078 -11.04611 -10.82297 -10.69015 -10.21639 -9.58198 -9.26117 -8.81014 -7.84040 -5.14368 -0.69454 -0.24859 1.08442 1.30012 1.38295 1.40804 1.46780 1.78467 2.05902 2.44135 2.45993 2.48037 3.09991 3.23766 3.35634 3.43702 3.53942 3.69991 3.89101 3.99210 4.10775 4.13906 4.23621 4.28302 4.34841 4.43664 4.49724 4.55137 4.61017 4.69676 4.73182 4.88769 4.92584 4.97540 5.04659 5.17072 5.20652 5.29459 5.33124 5.45573 5.46010 5.58611 5.68447 5.75092 5.82920 6.20934 6.33198 6.34379 6.77460 7.00988 7.10925 7.82326 8.48377 9.26343 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011943 B = 0.006134 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.809848 B = 4563.746030 C = 5935.203264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.938 3.062 4 H -0.316 1.316 5 H -0.304 1.304 6 H -0.239 1.239 7 C -0.191 4.191 8 H 0.074 0.926 9 N -0.605 5.605 10 C 0.186 3.814 11 C -0.132 4.132 12 C -0.083 4.083 13 H 0.127 0.873 14 C -0.116 4.116 15 C 0.117 3.883 16 N -0.579 5.579 17 C 0.588 3.412 18 O -0.573 6.573 19 C -0.209 4.209 20 C 0.206 3.794 21 N -0.461 5.461 22 C 0.360 3.640 23 N -0.508 5.508 24 C 0.037 3.963 25 C -0.085 4.085 26 N -0.397 5.397 27 C 0.177 3.823 28 C 0.096 3.904 29 C 0.139 3.861 30 H 0.037 0.963 31 H 0.238 0.762 32 H 0.004 0.996 33 H -0.005 1.005 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.219 0.781 41 H 0.224 0.776 42 H 0.215 0.785 43 H 0.185 0.815 44 H 0.074 0.926 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.493 -9.714 5.369 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.770 3.230 4 H -0.245 1.245 5 H -0.232 1.232 6 H -0.163 1.163 7 C -0.320 4.320 8 H 0.092 0.908 9 N -0.330 5.330 10 C 0.061 3.939 11 C -0.170 4.170 12 C -0.102 4.102 13 H 0.145 0.855 14 C -0.154 4.154 15 C -0.004 4.004 16 N -0.308 5.308 17 C 0.375 3.625 18 O -0.455 6.455 19 C -0.218 4.218 20 C 0.019 3.981 21 N -0.173 5.173 22 C 0.012 3.988 23 N -0.231 5.231 24 C -0.112 4.112 25 C -0.215 4.215 26 N -0.074 5.074 27 C 0.042 3.958 28 C -0.027 4.027 29 C 0.032 3.968 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.022 0.978 33 H 0.014 0.986 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.112 0.888 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.235 0.765 41 H 0.240 0.760 42 H 0.232 0.768 43 H 0.202 0.798 44 H 0.092 0.908 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.688 -9.503 4.698 13.095 hybrid contribution -1.509 2.347 0.751 2.890 sum 6.179 -7.156 5.449 10.912 Atomic orbital electron populations 1.70154 1.05946 1.24179 1.59715 1.25302 0.96112 0.99924 1.04478 0.85698 0.79322 0.81374 0.76609 1.24517 1.23181 1.16256 1.18945 0.89976 0.83158 1.39955 0.90834 1.44474 1.01936 1.00581 1.86018 1.20926 0.84026 0.92187 0.96742 1.23021 0.98144 0.95020 1.00828 1.22449 0.93969 0.99505 0.94323 0.85507 1.21848 0.96982 1.01267 0.95325 1.21885 0.87843 0.93580 0.97093 1.47818 1.41054 1.33554 1.08392 1.17369 0.79412 0.79869 0.85854 1.90755 1.67362 1.72924 1.14409 1.20527 1.04159 0.93558 1.03579 1.23889 0.86387 1.00814 0.87007 1.67783 1.24675 0.97796 1.27037 1.22246 0.92856 0.92646 0.91047 1.70628 1.27138 0.97507 1.27867 1.23236 0.96008 0.98453 0.93536 1.23286 1.07144 0.81590 1.09470 1.43939 1.26990 1.09550 1.26896 1.22468 0.90578 0.88941 0.93810 1.22039 0.98390 1.03782 0.78469 1.21040 0.92827 0.85831 0.97085 0.94535 0.95275 0.97787 0.98649 0.90749 0.91357 0.95128 0.88776 0.87016 0.90477 0.76494 0.76002 0.76787 0.79807 0.90770 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.97 10.38 21.65 0.22 -55.74 16 2 C -0.07 -3.57 5.49 84.86 0.47 -3.11 16 3 Si 0.94 44.62 29.55 68.60 2.03 46.65 16 4 H -0.32 -16.18 7.11 99.48 0.71 -15.48 16 5 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 6 H -0.24 -9.94 4.08 99.48 0.41 -9.54 16 7 C -0.19 -9.49 9.70 84.03 0.81 -8.67 16 8 H 0.07 3.56 5.76 -2.91 -0.02 3.55 16 9 N -0.61 -26.72 3.20 -674.16 -2.16 -28.87 16 10 C 0.19 8.46 4.62 86.71 0.40 8.86 16 11 C -0.13 -4.10 6.33 32.15 0.20 -3.90 16 12 C -0.08 -2.08 3.68 -9.38 -0.03 -2.11 16 13 H 0.13 2.12 8.14 -2.38 -0.02 2.10 16 14 C -0.12 -2.97 5.06 30.74 0.16 -2.81 16 15 C 0.12 2.70 6.47 86.37 0.56 3.25 16 16 N -0.58 -15.90 2.96 -825.91 -2.45 -18.35 16 17 C 0.59 18.90 7.31 86.71 0.63 19.54 16 18 O -0.57 -21.27 16.49 -3.99 -0.07 -21.34 16 19 C -0.21 -6.59 4.39 -20.03 -0.09 -6.68 16 20 C 0.21 5.90 8.62 85.64 0.74 6.64 16 21 N -0.46 -15.97 10.45 -196.21 -2.05 -18.02 16 22 C 0.36 13.32 8.91 261.29 2.33 15.65 16 23 N -0.51 -18.67 11.31 -199.51 -2.26 -20.92 16 24 C 0.04 1.06 11.82 83.64 0.99 2.05 16 25 C -0.09 -2.41 10.08 83.12 0.84 -1.57 16 26 N -0.40 -13.26 2.22 -355.66 -0.79 -14.05 16 27 C 0.18 5.79 10.50 84.03 0.88 6.67 16 28 C 0.10 2.46 4.52 85.76 0.39 2.85 16 29 C 0.14 4.36 2.96 44.76 0.13 4.50 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.00 0.21 7.04 -2.39 -0.02 0.19 16 33 H 0.00 -0.26 7.56 -2.39 -0.02 -0.27 16 34 H 0.07 2.10 7.97 -2.38 -0.02 2.08 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.03 1.10 6.85 -2.38 -0.02 1.08 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 2.01 7.06 -2.39 -0.02 1.99 16 40 H 0.22 4.32 6.78 -2.91 -0.02 4.30 16 41 H 0.22 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.22 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.18 5.63 8.06 -2.91 -0.02 5.61 16 44 H 0.07 2.19 2.91 -2.39 -0.01 2.18 16 45 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -78.12 348.57 2.63 -75.49 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.73 Total: 13.99 kcal Atomic # 6 Polarization: 31.76 SS G_CDS: 9.41 Total: 41.16 kcal Atomic # 7 Polarization: -146.49 SS G_CDS: -9.47 Total: -155.96 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.07 Total: -21.34 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -78.12 2.63 -75.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042154607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.410 kcal (2) G-P(sol) polarization free energy of solvation -78.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds