Wall clock time and date at job start Tue Mar 31 2020 23:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47338 * 240.00456 * 3 2 1 5 5 H 1.48501 * 109.47199 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46732 * 120.00623 * 3 2 1 7 7 C 1.38817 * 119.99414 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99287 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00394 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99938 * 173.69071 * 9 7 2 11 11 C 1.53001 * 112.85432 * 294.88921 * 10 9 7 12 12 N 1.46507 * 109.46872 * 292.10967 * 11 10 9 13 13 C 1.34776 * 119.99670 * 180.84938 * 12 11 10 14 14 O 1.21608 * 120.00199 * 0.02562 * 13 12 11 15 15 C 1.47427 * 119.99803 * 180.02562 * 13 12 11 16 16 C 1.41367 * 126.40645 * 0.02562 * 15 13 12 17 17 N 1.30437 * 108.08177 * 180.02562 * 16 15 13 18 18 N 1.39941 * 108.91623 * 0.02562 * 17 16 15 19 19 C 1.39806 * 125.77934 * 180.02562 * 18 17 16 20 20 C 1.38943 * 119.68681 * 359.70501 * 19 18 17 21 21 C 1.38429 * 119.10815 * 179.79118 * 20 19 18 22 22 C 1.38790 * 118.47827 * 0.47317 * 21 20 19 23 23 C 1.38132 * 119.29592 * 359.75109 * 22 21 20 24 24 N 1.31891 * 120.84281 * 0.02562 * 23 22 21 25 25 C 1.34623 * 108.44295 * 359.73392 * 18 17 16 26 26 C 1.53782 * 113.61703 * 66.08647 * 10 9 7 27 27 C 1.53958 * 87.01977 * 89.22462 * 26 10 9 28 28 C 1.53783 * 113.61301 * 163.69389 * 10 9 7 29 29 H 0.97001 * 119.99726 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99831 * 353.69479 * 9 7 2 31 31 H 1.08998 * 109.47697 * 172.11192 * 11 10 9 32 32 H 1.09001 * 109.47192 * 52.10776 * 11 10 9 33 33 H 0.96994 * 119.99828 * 0.85462 * 12 11 10 34 34 H 1.08009 * 125.96029 * 359.97438 * 16 15 13 35 35 H 1.08000 * 120.45150 * 0.02562 * 20 19 18 36 36 H 1.07995 * 120.76406 * 180.22092 * 21 20 19 37 37 H 1.08005 * 120.35376 * 179.72336 * 22 21 20 38 38 H 1.07999 * 119.58080 * 180.02562 * 23 22 21 39 39 H 1.07996 * 126.31445 * 180.27239 * 25 18 17 40 40 H 1.08999 * 113.61761 * 203.74623 * 26 10 9 41 41 H 1.09003 * 113.61150 * 334.65155 * 26 10 9 42 42 H 1.08997 * 113.53832 * 270.81456 * 27 26 10 43 43 H 1.08997 * 113.66010 * 139.93530 * 27 26 10 44 44 H 1.08993 * 113.61371 * 25.34744 * 28 10 9 45 45 H 1.09001 * 113.61457 * 156.25503 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0512 -3.6529 -0.1405 11 6 2.7357 -3.7979 -1.5012 12 7 1.7189 -3.9302 -2.5477 13 6 2.0917 -4.0882 -3.8332 14 8 3.2719 -4.1214 -4.1244 15 6 1.0685 -4.2209 -4.8863 16 6 -0.3329 -4.2009 -4.7019 17 7 -0.8969 -4.3472 -5.8688 18 7 0.1005 -4.4669 -6.8430 19 6 -0.1124 -4.6376 -8.2142 20 6 -1.4101 -4.7067 -8.7057 21 6 -1.6071 -4.8715 -10.0660 22 6 -0.4938 -4.9717 -10.8886 23 6 0.7677 -4.8993 -10.3304 24 7 0.9238 -4.7373 -9.0308 25 6 1.2998 -4.3834 -6.2371 26 6 2.9726 -3.9695 1.0493 27 6 1.7650 -4.6745 1.6935 28 6 1.2265 -4.8848 0.2684 29 1 -0.4850 0.8401 0.0004 30 1 0.3599 -2.3906 0.0921 31 1 3.3697 -4.6845 -1.4965 32 1 3.3457 -2.9160 -1.6968 33 1 0.7776 -3.9040 -2.3153 34 1 -0.8469 -4.0855 -3.7590 35 1 -2.2539 -4.6291 -8.0361 36 1 -2.6043 -4.9251 -10.4772 37 1 -0.6124 -5.1053 -11.9537 38 1 1.6372 -4.9763 -10.9663 39 1 2.2649 -4.4361 -6.7190 40 1 3.7909 -4.6451 0.8003 41 1 3.3036 -3.0844 1.5927 42 1 1.1474 -4.0125 2.3003 43 1 2.0217 -5.6023 2.2047 44 1 0.1500 -4.7378 0.1824 45 1 1.5666 -5.8112 -0.1945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273160708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:12 Heat of formation + Delta-G solvation = 124.250103 kcal Electronic energy + Delta-G solvation = -28463.278746 eV Core-core repulsion = 24484.047041 eV Total energy + Delta-G solvation = -3979.231705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.88196 -40.29775 -39.25143 -38.12618 -34.14395 -33.71572 -33.23067 -32.92742 -30.65358 -30.18214 -29.78029 -27.23031 -25.27114 -24.61464 -24.23209 -23.73589 -22.43876 -21.53229 -21.12725 -19.82997 -18.82055 -18.10997 -17.13301 -16.90697 -16.74723 -16.06454 -15.91766 -15.46898 -15.21126 -14.92849 -14.53130 -14.50875 -14.31560 -13.96528 -13.75032 -13.67126 -13.24191 -13.21429 -12.88756 -12.59465 -12.50504 -12.00853 -11.73576 -11.32556 -11.18541 -10.98807 -10.81547 -10.78271 -10.36265 -10.35363 -10.23278 -10.11343 -10.07983 -9.70990 -9.56467 -9.43278 -9.35938 -8.85488 -8.65244 -8.33902 -7.02085 -5.80697 -3.10063 0.26940 0.73483 1.70942 1.79457 2.12301 3.36422 3.44294 3.48910 3.50403 3.60527 3.76600 3.97944 4.14811 4.42886 4.54521 4.56336 4.62535 4.75853 4.89516 5.12025 5.21232 5.24567 5.28899 5.29939 5.31599 5.45241 5.55130 5.57466 5.66000 5.70942 5.81736 6.02246 6.08436 6.15723 6.21329 6.24029 6.34684 6.42558 6.59005 6.73682 6.74626 6.94222 7.00902 7.06030 7.10722 7.53962 7.71931 8.06348 8.38370 8.71360 9.49651 10.03145 10.38420 11.41308 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.002536 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.624097 B =11040.426896 C =12005.731614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.699 5.699 10 C 0.174 3.826 11 C 0.122 3.878 12 N -0.698 5.698 13 C 0.589 3.411 14 O -0.557 6.557 15 C -0.273 4.273 16 C 0.106 3.894 17 N -0.289 5.289 18 N -0.321 5.321 19 C 0.370 3.630 20 C -0.161 4.161 21 C -0.052 4.052 22 C -0.188 4.188 23 C 0.134 3.866 24 N -0.506 5.506 25 C 0.148 3.852 26 C -0.151 4.151 27 C -0.129 4.129 28 C -0.144 4.144 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.399 0.601 34 H 0.203 0.797 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.168 0.832 39 H 0.195 0.805 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -13.918 -16.983 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.081 3.919 11 C -0.004 4.004 12 N -0.347 5.347 13 C 0.375 3.625 14 O -0.437 6.437 15 C -0.287 4.287 16 C -0.084 4.084 17 N -0.106 5.106 18 N -0.095 5.095 19 C 0.144 3.856 20 C -0.183 4.183 21 C -0.079 4.079 22 C -0.208 4.208 23 C -0.024 4.024 24 N -0.219 5.219 25 C 0.003 3.997 26 C -0.191 4.191 27 C -0.166 4.166 28 C -0.182 4.182 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.233 0.767 34 H 0.219 0.781 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.185 0.815 39 H 0.212 0.788 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.999 -13.807 -17.519 22.507 hybrid contribution -0.336 1.174 0.235 1.243 sum -3.334 -12.633 -17.284 21.667 Atomic orbital electron populations 1.69638 1.05041 1.25817 1.57410 1.24712 0.95462 0.97589 1.02663 0.86319 0.78617 0.83645 0.77933 1.21204 1.21785 1.21258 1.19052 0.91048 0.83630 1.42852 0.91182 1.42047 1.06112 0.99043 1.86755 1.20819 0.93022 0.87413 0.90692 1.21870 0.90409 1.00669 0.87466 1.45514 1.10853 1.72441 1.05860 1.17081 0.87002 0.76495 0.81903 1.90749 1.17955 1.52540 1.82491 1.20536 0.94063 1.20249 0.93880 1.24411 0.92594 0.94533 0.96892 1.77251 1.11609 1.25452 0.96282 1.45419 1.05258 1.54659 1.04187 1.17728 0.90277 0.96440 0.81203 1.21679 0.96566 1.03241 0.96860 1.21560 1.00098 0.93942 0.92250 1.22193 0.93440 1.03350 1.01830 1.22566 0.97605 0.93474 0.88739 1.66889 1.33533 1.15790 1.05652 1.23148 0.91196 0.93338 0.92061 1.23343 0.96358 1.00353 0.99053 1.22664 0.98542 0.99487 0.95932 1.23143 0.99881 0.97884 0.97324 0.93483 0.77934 0.92632 0.91232 0.76679 0.78087 0.83125 0.83723 0.83946 0.81485 0.78824 0.91304 0.90720 0.90067 0.92773 0.91648 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.86 13.07 55.49 0.73 -26.14 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.14 9.04 -15.06 -0.14 -6.27 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.70 -15.81 5.18 -46.48 -0.24 -16.05 16 10 C 0.17 3.15 0.80 -131.01 -0.10 3.04 16 11 C 0.12 2.24 5.08 -4.04 -0.02 2.22 16 12 N -0.70 -11.94 5.41 -61.38 -0.33 -12.27 16 13 C 0.59 10.59 7.81 -12.52 -0.10 10.49 16 14 O -0.56 -11.73 16.90 5.27 0.09 -11.64 16 15 C -0.27 -4.23 6.13 -105.05 -0.64 -4.87 16 16 C 0.11 1.43 11.50 -16.95 -0.20 1.24 16 17 N -0.29 -4.05 11.74 30.88 0.36 -3.68 16 18 N -0.32 -4.47 3.76 -11.74 -0.04 -4.51 16 19 C 0.37 4.51 7.54 -154.38 -1.16 3.35 16 20 C -0.16 -1.55 9.69 -39.25 -0.38 -1.93 16 21 C -0.05 -0.34 10.17 -39.31 -0.40 -0.74 16 22 C -0.19 -1.09 10.11 -39.42 -0.40 -1.49 16 23 C 0.13 1.01 11.18 -17.57 -0.20 0.82 16 24 N -0.51 -5.70 9.82 -12.29 -0.12 -5.82 16 25 C 0.15 2.18 10.86 -16.41 -0.18 2.00 16 26 C -0.15 -2.55 7.29 -25.83 -0.19 -2.74 16 27 C -0.13 -1.97 8.00 -25.82 -0.21 -2.18 16 28 C -0.14 -2.16 7.05 -25.92 -0.18 -2.34 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 30 H 0.39 9.28 7.87 -40.82 -0.32 8.96 16 31 H 0.06 0.96 8.02 -51.93 -0.42 0.54 16 32 H 0.07 1.50 7.80 -51.93 -0.41 1.09 16 33 H 0.40 6.21 7.26 -40.82 -0.30 5.91 16 34 H 0.20 2.17 7.50 -52.48 -0.39 1.78 16 35 H 0.15 1.41 7.67 -52.49 -0.40 1.01 16 36 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 38 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.19 2.67 8.03 -52.49 -0.42 2.24 16 40 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 41 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 45 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -33.26 387.32 -9.32 -42.58 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -5.98 Total: 14.21 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -4.59 Total: 0.28 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: 0.35 Total: -68.48 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.26 -9.32 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273160708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.829 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds