Wall clock time and date at job start Tue Mar 31 2020 23:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48504 * 109.47028 * 269.99220 * 3 2 1 5 5 H 1.48496 * 109.47221 * 29.99852 * 3 2 1 6 6 H 1.48498 * 109.47131 * 149.99473 * 3 2 1 7 7 C 1.38815 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99854 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99821 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.88579 * 308.88105 * 11 10 9 13 13 C 1.55150 * 111.00522 * 184.99752 * 11 10 9 14 14 C 1.54325 * 102.94486 * 206.42157 * 13 11 10 15 15 N 1.47019 * 107.26681 * 22.19482 * 14 13 11 16 16 C 1.34783 * 125.64508 * 181.01366 * 15 14 13 17 17 O 1.21515 * 119.99902 * 180.02562 * 16 15 14 18 18 C 1.48154 * 120.00018 * 0.02580 * 16 15 14 19 19 C 1.39235 * 119.68785 * 179.73174 * 18 16 15 20 20 C 1.38713 * 119.19016 * 179.70822 * 19 18 16 21 21 C 1.38404 * 118.55641 * 0.55178 * 20 19 18 22 22 C 1.39264 * 119.30228 * 359.72640 * 21 20 19 23 23 N 1.39813 * 119.62150 * 180.02562 * 22 21 20 24 24 C 1.35847 * 126.10202 * 179.97438 * 23 22 21 25 25 C 1.35276 * 107.61338 * 179.97438 * 24 23 22 26 26 C 1.39959 * 107.96936 * 359.97438 * 25 24 23 27 27 N 1.30821 * 108.36782 * 359.71538 * 26 25 24 28 28 N 1.31981 * 120.75858 * 359.97438 * 22 21 20 29 29 C 1.47419 * 108.70567 * 1.05648 * 15 14 13 30 30 H 0.97000 * 120.00334 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00331 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47073 * 299.99655 * 10 9 7 33 33 H 1.09000 * 109.47212 * 59.99738 * 10 9 7 34 34 H 1.09001 * 110.71965 * 324.79002 * 13 11 10 35 35 H 1.09007 * 110.72172 * 87.87830 * 13 11 10 36 36 H 1.09000 * 109.87845 * 141.61127 * 14 13 11 37 37 H 1.08999 * 109.87901 * 262.77703 * 14 13 11 38 38 H 1.07999 * 120.40553 * 359.97438 * 19 18 16 39 39 H 1.08003 * 120.72054 * 180.25562 * 20 19 18 40 40 H 1.08007 * 120.34907 * 179.75580 * 21 20 19 41 41 H 1.07997 * 126.19450 * 359.97438 * 24 23 22 42 42 H 1.07994 * 126.01757 * 179.97438 * 25 24 23 43 43 H 1.07997 * 125.81917 * 180.02562 * 26 25 24 44 44 H 1.09005 * 110.36909 * 217.03491 * 29 15 14 45 45 H 1.09000 * 110.36656 * 94.71617 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0011 12 1 5.8816 -1.4918 -0.7917 13 6 6.4268 -3.5083 -0.1251 14 6 7.7664 -3.1564 0.5555 15 7 7.5142 -2.0204 1.4540 16 6 8.4374 -1.4027 2.2174 17 8 8.1144 -0.4698 2.9259 18 6 9.8460 -1.8612 2.1928 19 6 10.7955 -1.2148 2.9798 20 6 12.1101 -1.6565 2.9534 21 6 12.4336 -2.7225 2.1321 22 6 11.4357 -3.3199 1.3660 23 7 11.7549 -4.3976 0.5344 24 6 10.8904 -5.0755 -0.2647 25 6 11.5927 -6.0401 -0.9020 26 6 12.9253 -5.9521 -0.4834 27 7 13.0248 -4.9661 0.3707 28 7 10.1920 -2.8812 1.4167 29 6 6.0842 -1.6694 1.3825 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0007 32 1 3.8484 -3.0426 0.8909 33 1 3.8491 -3.0423 -0.8891 34 1 5.9274 -4.3205 0.4031 35 1 6.5798 -3.7681 -1.1726 36 1 8.1260 -4.0104 1.1296 37 1 8.5028 -2.8769 -0.1979 38 1 10.5110 -0.3825 3.6064 39 1 12.8659 -1.1759 3.5570 40 1 13.4490 -3.0875 2.0861 41 1 9.8338 -4.8797 -0.3719 42 1 11.1952 -6.7528 -1.6093 43 1 13.7347 -6.5864 -0.8132 44 1 5.9552 -0.5887 1.4433 45 1 5.5318 -2.1637 2.1817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491833607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:56 Heat of formation + Delta-G solvation = 122.078716 kcal Electronic energy + Delta-G solvation = -28796.414273 eV Core-core repulsion = 24817.088410 eV Total energy + Delta-G solvation = -3979.325863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.03008 -40.87580 -39.53396 -37.75212 -34.92386 -34.11293 -33.36176 -32.11952 -30.83980 -30.73291 -29.94332 -28.97505 -26.40105 -24.84356 -24.44625 -23.23405 -21.72547 -21.69255 -21.37194 -20.34919 -19.95107 -18.46471 -17.93620 -17.40961 -16.58950 -16.51927 -16.12870 -15.81594 -15.66796 -15.10493 -14.85623 -14.48559 -14.18049 -13.96784 -13.82465 -13.74394 -13.66042 -13.23870 -13.02503 -12.80127 -12.73682 -12.57467 -12.29189 -11.96089 -11.72762 -11.33108 -10.96791 -10.95168 -10.85513 -10.71744 -10.62255 -10.43489 -10.41095 -10.11987 -9.92848 -9.64261 -9.58793 -8.90618 -8.85285 -8.63784 -7.24483 -5.76746 -3.12785 0.04342 0.37255 1.55431 1.59725 2.32373 2.50848 2.71222 3.39514 3.40756 3.43247 3.47505 3.58861 3.91592 4.21831 4.39846 4.45396 4.53940 4.58765 4.60497 4.66719 4.76006 4.89298 4.93940 5.04327 5.20991 5.25995 5.38622 5.42923 5.49910 5.54301 5.57739 5.63896 5.72501 5.78318 5.81944 5.83939 5.96053 6.05898 6.09713 6.13900 6.27437 6.56980 6.58522 6.69046 6.79551 7.27674 7.36158 7.91754 7.98369 8.41959 9.20582 9.93096 10.12072 11.41502 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.002544 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.007020 B =11002.963741 C =12361.811413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.170 3.830 11 C -0.110 4.110 12 H 0.085 0.915 13 C -0.130 4.130 14 C 0.117 3.883 15 N -0.596 5.596 16 C 0.580 3.420 17 O -0.527 6.527 18 C 0.122 3.878 19 C -0.123 4.123 20 C -0.056 4.056 21 C -0.145 4.145 22 C 0.368 3.632 23 N -0.327 5.327 24 C 0.079 3.921 25 C -0.263 4.263 26 C 0.066 3.934 27 N -0.287 5.287 28 N -0.478 5.478 29 C 0.111 3.889 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.184 0.816 42 H 0.158 0.842 43 H 0.194 0.806 44 H 0.082 0.918 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.674 -11.864 1.206 32.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.042 3.958 11 C -0.129 4.129 12 H 0.103 0.897 13 C -0.169 4.169 14 C -0.006 4.006 15 N -0.328 5.328 16 C 0.366 3.634 17 O -0.403 6.403 18 C -0.017 4.017 19 C -0.145 4.145 20 C -0.082 4.082 21 C -0.167 4.167 22 C 0.138 3.862 23 N -0.105 5.105 24 C -0.062 4.062 25 C -0.292 4.292 26 C -0.123 4.123 27 N -0.105 5.105 28 N -0.194 5.194 29 C -0.010 4.010 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.201 0.799 42 H 0.176 0.824 43 H 0.211 0.789 44 H 0.100 0.900 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 30.375 -11.077 1.935 32.389 hybrid contribution 0.614 1.011 -0.183 1.197 sum 30.989 -10.066 1.752 32.630 Atomic orbital electron populations 1.69696 1.05112 1.25863 1.57464 1.24670 0.95233 0.97225 1.01928 0.86570 0.79366 0.84992 0.77770 1.21093 1.21675 1.20191 1.19037 0.80553 0.94738 1.43183 0.89162 1.42734 1.04133 1.02161 1.91228 1.20571 0.86601 0.89520 0.99110 1.22646 0.97072 0.96869 0.96345 0.89670 1.22765 0.94558 0.98103 1.01469 1.22146 0.97309 0.88471 0.92683 1.48366 1.09404 1.32991 1.41991 1.17366 0.83150 0.82474 0.80383 1.90839 1.80035 1.28338 1.41107 1.20857 0.94919 0.91889 0.94055 1.22185 0.92600 1.00817 0.98903 1.21576 0.96371 0.94184 0.96077 1.21830 1.00807 0.97166 0.96929 1.17621 0.89738 0.87693 0.91115 1.45769 1.07066 1.24556 1.33145 1.23010 0.97919 0.93076 0.92179 1.21714 0.93729 1.04881 1.08832 1.24188 0.98062 0.95457 0.94556 1.77448 0.98382 1.12698 1.22020 1.66980 1.17439 1.13782 1.21175 1.22476 0.78503 1.01976 0.98055 0.93038 0.80632 0.95131 0.94816 0.90130 0.89760 0.91015 0.90956 0.82516 0.82869 0.82962 0.79941 0.82401 0.78939 0.89996 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.46 13.97 55.49 0.78 -28.69 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.42 27.74 -169.99 -4.71 17.70 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 7 C -0.25 -6.92 10.47 -15.06 -0.16 -7.08 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.76 -17.70 5.35 -59.90 -0.32 -18.02 16 10 C 0.17 3.07 5.72 -4.04 -0.02 3.05 16 11 C -0.11 -1.57 3.05 -88.48 -0.27 -1.84 16 12 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.13 -1.36 6.42 -24.90 -0.16 -1.52 16 14 C 0.12 1.24 5.16 -3.07 -0.02 1.22 16 15 N -0.60 -8.17 3.33 -171.52 -0.57 -8.74 16 16 C 0.58 8.43 7.84 -12.19 -0.10 8.33 16 17 O -0.53 -9.22 16.57 5.35 0.09 -9.13 16 18 C 0.12 1.43 6.72 -83.03 -0.56 0.87 16 19 C -0.12 -1.15 9.63 -39.04 -0.38 -1.53 16 20 C -0.06 -0.39 10.16 -39.34 -0.40 -0.79 16 21 C -0.14 -1.19 9.70 -39.14 -0.38 -1.57 16 22 C 0.37 3.72 7.55 -154.53 -1.17 2.56 16 23 N -0.33 -3.22 3.81 -12.10 -0.05 -3.27 16 24 C 0.08 0.65 11.10 -16.83 -0.19 0.46 16 25 C -0.26 -1.75 10.80 -39.99 -0.43 -2.18 16 26 C 0.07 0.45 12.02 -17.34 -0.21 0.24 16 27 N -0.29 -2.70 11.83 30.64 0.36 -2.34 16 28 N -0.48 -5.16 6.34 -8.85 -0.06 -5.21 16 29 C 0.11 1.71 6.32 -2.53 -0.02 1.69 16 30 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 31 H 0.36 8.35 5.53 -40.82 -0.23 8.12 16 32 H 0.03 0.56 7.96 -51.93 -0.41 0.15 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.71 7.53 -51.93 -0.39 0.32 16 37 H 0.07 0.74 7.41 -51.93 -0.38 0.35 16 38 H 0.16 1.37 7.63 -52.49 -0.40 0.97 16 39 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 40 H 0.15 1.08 7.68 -52.48 -0.40 0.68 16 41 H 0.18 1.22 7.81 -52.49 -0.41 0.81 16 42 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.19 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 45 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -35.57 378.35 -9.32 -44.89 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.00 Total: 5.11 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -4.54 Total: 1.99 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: 0.14 Total: -66.27 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.57 -9.32 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491833607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.970 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds