Wall clock time and date at job start Wed Apr 1 2020 00:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00431 * 2 1 4 4 H 1.48503 * 109.46660 * 239.99559 * 3 2 1 5 5 H 1.48492 * 109.47185 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47074 * 119.99856 * 3 2 1 7 7 C 1.38819 * 119.99448 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99720 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99823 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47143 * 65.00251 * 11 10 9 13 13 N 1.46492 * 109.47454 * 304.99757 * 11 10 9 14 14 C 1.34780 * 120.00475 * 155.00102 * 13 11 10 15 15 O 1.21514 * 119.99525 * 0.02562 * 14 13 11 16 16 C 1.48156 * 120.00556 * 180.02562 * 14 13 11 17 17 C 1.39947 * 120.89008 * 0.02562 * 16 14 13 18 18 C 1.38043 * 119.13670 * 180.02562 * 17 16 14 19 19 N 1.31858 * 120.97841 * 359.97438 * 18 17 16 20 20 C 1.32224 * 121.97185 * 359.97438 * 19 18 17 21 21 N 1.39851 * 119.61793 * 180.02562 * 20 19 18 22 22 C 1.37166 * 126.49082 * 4.71348 * 21 20 19 23 23 C 1.34623 * 106.83068 * 179.90119 * 22 21 20 24 24 N 1.34154 * 108.21372 * 0.36460 * 23 22 21 25 25 C 1.30486 * 109.37388 * 359.76988 * 24 23 22 26 26 C 1.38903 * 120.75405 * 0.02840 * 20 19 18 27 27 C 1.53011 * 109.46794 * 184.99915 * 11 10 9 28 28 C 1.53000 * 117.49589 * 248.74600 * 27 11 10 29 29 C 1.53001 * 117.49429 * 180.08966 * 27 11 10 30 30 H 0.97006 * 119.99193 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00536 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47171 * 60.00151 * 10 9 7 33 33 H 1.09002 * 109.47217 * 300.00142 * 10 9 7 34 34 H 0.96999 * 120.00313 * 335.00457 * 13 11 10 35 35 H 1.08007 * 120.43192 * 359.95751 * 17 16 14 36 36 H 1.07994 * 119.50770 * 180.02562 * 18 17 16 37 37 H 1.08005 * 126.58678 * 0.03505 * 22 21 20 38 38 H 1.07998 * 125.89509 * 180.11007 * 23 22 21 39 39 H 1.07996 * 125.72104 * 179.97438 * 25 24 23 40 40 H 1.07996 * 120.53075 * 179.97438 * 26 20 19 41 41 H 1.08995 * 115.55236 * 34.41677 * 27 11 10 42 42 H 1.09000 * 117.50056 * 0.02562 * 28 27 11 43 43 H 1.09000 * 117.49962 * 145.02389 * 28 27 11 44 44 H 1.09004 * 117.49398 * 214.97904 * 29 27 11 45 45 H 1.09001 * 117.50111 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1042 1.6961 -1.2125 5 1 1.2855 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0578 -3.6569 0.0027 11 6 1.0634 -4.8197 0.0031 12 1 0.4976 -4.8142 -0.9285 13 7 0.1435 -4.6753 1.1340 14 6 -1.0810 -5.2360 1.0827 15 8 -1.4218 -5.8618 0.0984 16 6 -2.0115 -5.0895 2.2262 17 6 -1.6386 -4.3724 3.3687 18 6 -2.5340 -4.2592 4.4132 19 7 -3.7281 -4.8145 4.3468 20 6 -4.1235 -5.4999 3.2874 21 7 -5.4013 -6.0680 3.2693 22 6 -6.3726 -5.9219 4.2266 23 6 -7.4389 -6.6311 3.8115 24 7 -7.1307 -7.2035 2.6380 25 6 -5.9135 -6.8743 2.3022 26 6 -3.2842 -5.6622 2.1926 27 6 1.8242 -6.1412 0.1300 28 6 1.8340 -7.0701 -1.0857 29 6 1.0014 -7.4310 0.1471 30 1 -0.4849 0.8402 -0.0004 31 1 0.3554 -2.3881 0.0016 32 1 2.6844 -3.7139 0.8928 33 1 2.6845 -3.7155 -0.8872 34 1 0.4157 -4.1760 1.9199 35 1 -0.6625 -3.9145 3.4328 36 1 -2.2526 -3.7068 5.2975 37 1 -6.2974 -5.3464 5.1375 38 1 -8.3787 -6.7266 4.3351 39 1 -5.3993 -7.1898 1.4065 40 1 -3.6107 -6.2231 1.3294 41 1 2.7227 -6.1091 0.7462 42 1 1.2990 -6.7397 -1.9759 43 1 2.7389 -7.6495 -1.2690 44 1 1.3589 -8.2477 0.7743 45 1 -0.0818 -7.3382 0.0683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716632263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:44 Heat of formation + Delta-G solvation = 118.720377 kcal Electronic energy + Delta-G solvation = -28779.326182 eV Core-core repulsion = 24799.854691 eV Total energy + Delta-G solvation = -3979.471491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.58060 -40.78048 -39.53875 -37.31610 -35.19652 -34.58770 -33.63861 -32.94501 -31.23892 -30.38330 -29.50891 -28.25089 -25.18239 -24.45519 -23.99736 -22.35437 -22.08165 -21.63303 -21.18372 -20.64184 -20.21827 -19.08703 -17.49200 -17.16409 -16.77483 -16.11836 -16.04833 -15.84417 -15.44304 -15.07949 -14.96699 -14.48527 -14.19068 -14.12404 -14.08996 -13.98249 -13.60722 -13.55383 -13.26702 -12.99026 -12.34643 -12.25662 -11.83314 -11.39242 -11.17420 -11.03793 -10.99998 -10.88347 -10.49512 -10.39379 -10.30147 -10.23851 -10.17470 -10.06187 -9.84492 -9.76478 -9.09948 -9.02168 -8.88028 -8.72828 -7.08351 -5.88286 -3.18979 0.25270 0.47970 1.88488 2.12482 2.79299 2.89230 2.99375 3.35905 3.41212 3.42161 3.54500 3.89239 3.98556 4.27217 4.36878 4.41272 4.45907 4.56855 4.61960 4.76843 4.95998 5.05379 5.11332 5.16017 5.22486 5.27817 5.33015 5.43754 5.45126 5.62260 5.67632 5.74944 5.77061 5.85677 5.95930 6.02513 6.09754 6.24571 6.30075 6.38697 6.42424 6.51987 6.72749 6.83109 7.37202 7.53691 7.58308 7.72587 8.16381 8.29057 9.41130 9.94889 10.30202 11.33626 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.003015 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.097005 B = 9283.438634 C =11251.886765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.147 3.853 11 C 0.168 3.832 12 H 0.092 0.908 13 N -0.693 5.693 14 C 0.561 3.439 15 O -0.530 6.530 16 C -0.050 4.050 17 C -0.143 4.143 18 C 0.134 3.866 19 N -0.486 5.486 20 C 0.338 3.662 21 N -0.409 5.409 22 C -0.025 4.025 23 C -0.032 4.032 24 N -0.479 5.479 25 C 0.196 3.804 26 C -0.124 4.124 27 C -0.164 4.164 28 C -0.169 4.169 29 C -0.186 4.186 30 H 0.257 0.743 31 H 0.385 0.615 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.405 0.595 35 H 0.153 0.847 36 H 0.176 0.824 37 H 0.182 0.818 38 H 0.176 0.824 39 H 0.213 0.787 40 H 0.155 0.845 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 -14.270 9.049 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.019 3.981 11 C 0.064 3.936 12 H 0.110 0.890 13 N -0.343 5.343 14 C 0.346 3.654 15 O -0.408 6.408 16 C -0.062 4.062 17 C -0.164 4.164 18 C -0.024 4.024 19 N -0.198 5.198 20 C 0.110 3.890 21 N -0.091 5.091 22 C -0.155 4.155 23 C -0.177 4.177 24 N -0.196 5.196 25 C -0.086 4.086 26 C -0.147 4.147 27 C -0.184 4.184 28 C -0.206 4.206 29 C -0.223 4.223 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.241 0.759 35 H 0.170 0.830 36 H 0.193 0.807 37 H 0.199 0.801 38 H 0.193 0.807 39 H 0.230 0.770 40 H 0.173 0.827 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.521 -14.946 8.585 18.098 hybrid contribution 1.482 1.792 0.226 2.336 sum -4.039 -13.154 8.811 16.339 Atomic orbital electron populations 1.69654 1.05116 1.25938 1.57118 1.24756 0.95512 0.97750 1.02608 0.86263 0.78535 0.83422 0.77895 1.21203 1.21668 1.21215 1.19149 0.91019 0.83949 1.43553 0.91111 1.42340 1.05929 0.99720 1.89729 1.20936 0.92947 0.84928 0.99246 1.20911 0.90065 0.93143 0.89482 0.89047 1.45860 1.13930 1.53341 1.21130 1.17908 0.81800 0.79591 0.86106 1.90708 1.76092 1.41334 1.32651 1.20285 0.94215 0.96743 0.94925 1.22503 1.02314 0.98266 0.93343 1.22582 0.86649 0.94620 0.98534 1.66846 1.18833 1.09284 1.24847 1.17995 0.84849 0.94845 0.91333 1.43116 1.09693 1.37120 1.19195 1.22933 0.89043 1.06555 0.96993 1.22405 0.99705 1.00809 0.94803 1.70348 1.11688 1.23512 1.14055 1.25436 0.91748 0.95478 0.95935 1.21596 0.93054 1.01441 0.98573 1.22649 1.01560 0.91202 1.03011 1.22904 1.02069 1.02917 0.92736 1.23263 1.00535 0.97465 1.01008 0.93361 0.78073 0.95586 0.94399 0.75852 0.82982 0.80739 0.80079 0.80686 0.77040 0.82710 0.87696 0.88634 0.89074 0.89775 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.42 9.99 -15.06 -0.15 -6.57 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.73 -16.88 5.43 -59.91 -0.33 -17.21 16 10 C 0.15 2.62 5.80 -4.04 -0.02 2.60 16 11 C 0.17 2.54 2.43 -67.93 -0.17 2.38 16 12 H 0.09 1.59 7.34 -51.93 -0.38 1.21 16 13 N -0.69 -9.70 4.46 -54.65 -0.24 -9.94 16 14 C 0.56 8.06 7.13 -12.19 -0.09 7.98 16 15 O -0.53 -8.78 13.46 5.35 0.07 -8.70 16 16 C -0.05 -0.62 5.91 -104.68 -0.62 -1.24 16 17 C -0.14 -1.48 9.61 -39.01 -0.37 -1.85 16 18 C 0.13 1.30 11.17 -17.61 -0.20 1.10 16 19 N -0.49 -5.64 9.87 -12.34 -0.12 -5.77 16 20 C 0.34 4.06 7.50 -154.42 -1.16 2.90 16 21 N -0.41 -4.81 2.98 -63.84 -0.19 -5.00 16 22 C -0.03 -0.28 11.17 -16.44 -0.18 -0.46 16 23 C -0.03 -0.35 11.85 -17.82 -0.21 -0.56 16 24 N -0.48 -6.08 11.24 -14.46 -0.16 -6.24 16 25 C 0.20 2.21 11.89 -89.57 -1.07 1.15 16 26 C -0.12 -1.47 9.07 -38.83 -0.35 -1.82 16 27 C -0.16 -2.08 5.36 -90.61 -0.49 -2.57 16 28 C -0.17 -2.01 10.18 -26.69 -0.27 -2.28 16 29 C -0.19 -2.30 9.74 -26.69 -0.26 -2.56 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.39 9.51 7.33 -40.82 -0.30 9.22 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.41 5.22 6.74 -40.82 -0.28 4.94 16 35 H 0.15 1.32 6.53 -52.48 -0.34 0.98 16 36 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.18 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.21 1.76 7.07 -52.49 -0.37 1.39 16 40 H 0.16 1.68 6.46 -52.49 -0.34 1.34 16 41 H 0.10 1.22 8.11 -51.93 -0.42 0.80 16 42 H 0.10 1.20 8.05 -51.93 -0.42 0.78 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.12 1.65 5.02 -51.93 -0.26 1.39 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -32.66 381.19 -10.84 -43.49 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -5.61 Total: 15.48 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -5.70 Total: -2.17 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -0.32 Total: -70.26 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.66 -10.84 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.215 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds