Wall clock time and date at job start Wed Apr 1 2020 00:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99949 * 2 1 4 4 H 1.48500 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47063 * 299.99624 * 3 2 1 6 6 H 1.48499 * 109.47208 * 59.99996 * 3 2 1 7 7 C 1.38813 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99991 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00360 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47051 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.47289 * 295.00357 * 11 10 9 13 13 N 1.46504 * 109.46839 * 55.00700 * 11 10 9 14 14 C 1.34771 * 119.99882 * 204.99569 * 13 11 10 15 15 O 1.21518 * 119.99947 * 0.02562 * 14 13 11 16 16 C 1.48156 * 120.00035 * 180.02562 * 14 13 11 17 17 C 1.39949 * 120.89173 * 0.02562 * 16 14 13 18 18 C 1.38037 * 119.13486 * 179.97438 * 17 16 14 19 19 N 1.31854 * 120.98347 * 359.97076 * 18 17 16 20 20 C 1.32227 * 121.97421 * 0.02898 * 19 18 17 21 21 N 1.39850 * 119.62856 * 179.97438 * 20 19 18 22 22 C 1.37172 * 126.48071 * 4.71465 * 21 20 19 23 23 C 1.34625 * 106.82422 * 179.89907 * 22 21 20 24 24 N 1.34156 * 108.21442 * 0.36411 * 23 22 21 25 25 C 1.30475 * 109.37160 * 359.76797 * 24 23 22 26 26 C 1.38913 * 120.74576 * 359.97438 * 20 19 18 27 27 C 1.53003 * 109.46775 * 175.00122 * 11 10 9 28 28 C 1.52998 * 117.50250 * 248.75053 * 27 11 10 29 29 C 1.52993 * 117.49694 * 180.08873 * 27 11 10 30 30 H 0.96999 * 120.00627 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99951 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46926 * 60.00455 * 10 9 7 33 33 H 1.08998 * 109.47656 * 300.00508 * 10 9 7 34 34 H 0.96994 * 119.99935 * 24.99741 * 13 11 10 35 35 H 1.07993 * 120.43139 * 359.95267 * 17 16 14 36 36 H 1.08004 * 119.50966 * 179.97438 * 18 17 16 37 37 H 1.07996 * 126.59082 * 0.03346 * 22 21 20 38 38 H 1.07998 * 125.88901 * 180.13214 * 23 22 21 39 39 H 1.08006 * 125.72379 * 179.97438 * 25 24 23 40 40 H 1.07999 * 120.52566 * 180.02562 * 26 20 19 41 41 H 1.09005 * 115.55180 * 34.42484 * 27 11 10 42 42 H 1.09000 * 117.49689 * 359.97438 * 28 27 11 43 43 H 1.08995 * 117.50024 * 145.02413 * 28 27 11 44 44 H 1.09005 * 117.50286 * 214.97890 * 29 27 11 45 45 H 1.09005 * 117.50440 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4979 -4.8134 0.9327 13 7 0.1440 -4.6763 -1.1301 14 6 -1.0804 -5.2372 -1.0783 15 8 -1.4216 -5.8614 -0.0931 16 6 -2.0104 -5.0927 -2.2225 17 6 -1.6367 -4.3783 -3.3664 18 6 -2.5316 -4.2669 -4.4114 19 7 -3.7256 -4.8223 -4.3447 20 6 -4.1215 -5.5061 -3.2845 21 7 -5.3992 -6.0744 -3.2659 22 6 -6.3036 -6.0819 -4.2972 23 6 -7.3956 -6.7320 -3.8531 24 7 -7.1737 -7.1063 -2.5841 25 6 -5.9821 -6.7186 -2.2206 26 6 -3.2827 -5.6663 -2.1889 27 6 1.8246 -6.1412 -0.1245 28 6 1.6662 -6.9264 -1.4280 29 6 1.0018 -7.4309 -0.1446 30 1 -0.4851 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6847 -3.7146 0.8906 33 1 2.6848 -3.7146 -0.8894 34 1 0.4162 -4.1778 -1.9163 35 1 -0.6609 -3.9200 -3.4306 36 1 -2.2496 -3.7167 -5.2970 37 1 -6.1653 -5.6511 -5.2778 38 1 -8.2964 -6.9167 -4.4195 39 1 -5.5341 -6.8818 -1.2515 40 1 -3.6095 -6.2259 -1.3249 41 1 2.7972 -6.1724 0.3668 42 1 1.0196 -6.5018 -2.1960 43 1 2.5344 -7.4744 -1.7941 44 1 1.4331 -8.3107 0.3330 45 1 -0.0816 -7.3380 -0.0687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716632264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:49 Heat of formation + Delta-G solvation = 123.002710 kcal Electronic energy + Delta-G solvation = -28963.939109 eV Core-core repulsion = 24984.653313 eV Total energy + Delta-G solvation = -3979.285796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.59042 -40.86382 -39.67102 -37.29236 -35.07647 -34.60985 -33.58422 -32.92124 -31.28848 -30.38923 -29.51859 -28.36114 -25.19447 -24.46699 -24.07164 -22.37429 -22.22974 -21.62038 -21.20660 -20.68627 -19.88240 -19.11375 -17.50958 -17.24067 -16.66597 -16.22657 -16.08894 -15.94583 -15.70148 -15.13483 -14.67309 -14.52164 -14.20067 -14.10704 -14.09219 -13.94643 -13.58799 -13.52213 -13.37528 -12.98080 -12.36747 -12.24117 -11.80604 -11.50187 -11.38047 -11.04913 -10.99447 -10.92212 -10.52709 -10.40182 -10.29138 -10.24161 -10.15462 -9.91989 -9.85901 -9.70167 -9.11061 -9.03877 -8.90710 -8.73726 -7.08336 -5.88806 -3.19361 0.23449 0.46386 1.87325 2.11599 2.76327 2.88155 3.01447 3.35048 3.41289 3.43463 3.52717 3.89685 3.94153 4.23710 4.31746 4.39609 4.46613 4.55246 4.59969 4.78861 4.94631 5.05076 5.07026 5.11761 5.20423 5.27678 5.39482 5.43096 5.45113 5.59228 5.65283 5.72435 5.83741 5.86708 5.88605 6.00978 6.08996 6.17888 6.31127 6.37660 6.41732 6.53095 6.71067 6.82282 7.35938 7.50103 7.59075 7.72033 8.13061 8.28505 9.40813 9.94669 10.29847 11.33262 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010649 B = 0.003015 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.740248 B = 9284.258212 C =11000.812186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.732 5.732 10 C 0.147 3.853 11 C 0.168 3.832 12 H 0.095 0.905 13 N -0.694 5.694 14 C 0.559 3.441 15 O -0.526 6.526 16 C -0.051 4.051 17 C -0.144 4.144 18 C 0.134 3.866 19 N -0.485 5.485 20 C 0.338 3.662 21 N -0.409 5.409 22 C -0.026 4.026 23 C -0.032 4.032 24 N -0.479 5.479 25 C 0.196 3.804 26 C -0.123 4.123 27 C -0.160 4.160 28 C -0.178 4.178 29 C -0.187 4.187 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.037 0.963 33 H 0.028 0.972 34 H 0.406 0.594 35 H 0.152 0.848 36 H 0.176 0.824 37 H 0.182 0.818 38 H 0.176 0.824 39 H 0.213 0.787 40 H 0.155 0.845 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.336 -14.396 -9.652 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.377 5.377 10 C 0.019 3.981 11 C 0.064 3.936 12 H 0.113 0.887 13 N -0.345 5.345 14 C 0.344 3.656 15 O -0.404 6.404 16 C -0.063 4.063 17 C -0.165 4.165 18 C -0.023 4.023 19 N -0.198 5.198 20 C 0.110 3.890 21 N -0.091 5.091 22 C -0.156 4.156 23 C -0.177 4.177 24 N -0.196 5.196 25 C -0.085 4.085 26 C -0.146 4.146 27 C -0.180 4.180 28 C -0.215 4.215 29 C -0.223 4.223 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.243 0.757 35 H 0.170 0.830 36 H 0.193 0.807 37 H 0.199 0.801 38 H 0.193 0.807 39 H 0.230 0.770 40 H 0.173 0.827 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.495 -15.021 -9.147 18.425 hybrid contribution 1.482 1.729 -0.242 2.289 sum -4.013 -13.293 -9.389 16.762 Atomic orbital electron populations 1.69664 1.05116 1.25711 1.57312 1.24753 0.95510 0.97759 1.02670 0.86124 0.78795 0.84020 0.77247 1.20520 1.21837 1.21811 1.19237 0.91076 0.83925 1.43245 0.91009 1.42357 1.05943 0.99746 1.89694 1.20933 0.92972 0.84931 0.99250 1.20864 0.90090 0.93189 0.89498 0.88700 1.45883 1.13974 1.53489 1.21168 1.17935 0.81776 0.79678 0.86182 1.90722 1.75917 1.41202 1.32523 1.20283 0.94267 0.96827 0.94898 1.22496 1.02344 0.98331 0.93328 1.22583 0.86639 0.94577 0.98536 1.66849 1.18771 1.09039 1.25110 1.17998 0.84857 0.94621 0.91483 1.43117 1.10710 1.41867 1.13452 1.22930 0.90560 1.06899 0.95171 1.22408 0.99472 1.03126 0.92690 1.70348 1.13832 1.22177 1.13225 1.25443 0.90621 0.98142 0.94337 1.21599 0.92966 1.01336 0.98740 1.22695 1.00933 0.92257 1.02080 1.22891 1.03030 1.04047 0.91541 1.23338 1.01410 0.96876 1.00714 0.93467 0.78077 0.94516 0.95430 0.75737 0.83009 0.80725 0.80082 0.80683 0.77022 0.82697 0.86975 0.89231 0.89320 0.89538 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.78 13.06 55.49 0.72 -26.05 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.42 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.35 9.99 -15.06 -0.15 -6.50 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -16.79 5.43 -59.91 -0.33 -17.12 16 10 C 0.15 2.59 5.80 -4.04 -0.02 2.57 16 11 C 0.17 2.51 2.59 -67.92 -0.18 2.34 16 12 H 0.10 1.64 7.58 -51.93 -0.39 1.24 16 13 N -0.69 -9.55 3.01 -54.65 -0.16 -9.71 16 14 C 0.56 7.94 6.63 -12.19 -0.08 7.85 16 15 O -0.53 -8.67 13.47 5.35 0.07 -8.60 16 16 C -0.05 -0.63 5.91 -104.68 -0.62 -1.24 16 17 C -0.14 -1.47 9.61 -39.01 -0.37 -1.84 16 18 C 0.13 1.29 11.17 -17.62 -0.20 1.10 16 19 N -0.49 -5.60 9.87 -12.34 -0.12 -5.72 16 20 C 0.34 4.04 7.50 -154.42 -1.16 2.88 16 21 N -0.41 -4.79 2.98 -63.84 -0.19 -4.98 16 22 C -0.03 -0.28 11.17 -16.44 -0.18 -0.46 16 23 C -0.03 -0.35 11.85 -17.82 -0.21 -0.56 16 24 N -0.48 -6.08 11.24 -14.47 -0.16 -6.24 16 25 C 0.20 2.23 11.89 -89.60 -1.07 1.16 16 26 C -0.12 -1.46 9.07 -38.82 -0.35 -1.81 16 27 C -0.16 -2.01 5.70 -90.62 -0.52 -2.53 16 28 C -0.18 -2.01 9.74 -26.70 -0.26 -2.27 16 29 C -0.19 -2.31 9.82 -26.70 -0.26 -2.58 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.39 9.46 7.33 -40.82 -0.30 9.16 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.41 5.17 6.74 -40.82 -0.28 4.90 16 35 H 0.15 1.30 6.53 -52.49 -0.34 0.96 16 36 H 0.18 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.21 1.78 7.07 -52.48 -0.37 1.41 16 40 H 0.16 1.68 6.46 -52.49 -0.34 1.34 16 41 H 0.11 1.30 8.11 -51.93 -0.42 0.88 16 42 H 0.09 1.01 6.67 -51.93 -0.35 0.66 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.11 1.65 5.01 -51.93 -0.26 1.39 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -32.63 378.27 -10.77 -43.40 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -5.55 Total: 15.21 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -5.73 Total: -2.27 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -0.24 Total: -69.83 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.63 -10.77 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.399 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds