Wall clock time and date at job start Wed Apr 1 2020 00:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99949 * 2 1 4 4 H 1.48500 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47063 * 299.99624 * 3 2 1 6 6 H 1.48499 * 109.47208 * 59.99996 * 3 2 1 7 7 C 1.38813 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99991 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00360 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47051 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.47289 * 295.00357 * 11 10 9 13 13 N 1.46504 * 109.46839 * 55.00700 * 11 10 9 14 14 C 1.34771 * 119.99882 * 204.99569 * 13 11 10 15 15 O 1.21518 * 119.99947 * 0.02562 * 14 13 11 16 16 C 1.48156 * 120.00035 * 180.02562 * 14 13 11 17 17 C 1.39949 * 120.89173 * 0.02562 * 16 14 13 18 18 C 1.38037 * 119.13486 * 179.97438 * 17 16 14 19 19 N 1.31854 * 120.98347 * 359.97076 * 18 17 16 20 20 C 1.32227 * 121.97421 * 0.02898 * 19 18 17 21 21 N 1.39850 * 119.62856 * 179.97438 * 20 19 18 22 22 C 1.37172 * 126.48071 * 4.71465 * 21 20 19 23 23 C 1.34625 * 106.82422 * 179.89907 * 22 21 20 24 24 N 1.34156 * 108.21442 * 0.36411 * 23 22 21 25 25 C 1.30475 * 109.37160 * 359.76797 * 24 23 22 26 26 C 1.38913 * 120.74576 * 359.97438 * 20 19 18 27 27 C 1.53003 * 109.46775 * 175.00122 * 11 10 9 28 28 C 1.52998 * 117.50250 * 248.75053 * 27 11 10 29 29 C 1.52993 * 117.49694 * 180.08873 * 27 11 10 30 30 H 0.96999 * 120.00627 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99951 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46926 * 60.00455 * 10 9 7 33 33 H 1.08998 * 109.47656 * 300.00508 * 10 9 7 34 34 H 0.96994 * 119.99935 * 24.99741 * 13 11 10 35 35 H 1.07993 * 120.43139 * 359.95267 * 17 16 14 36 36 H 1.08004 * 119.50966 * 179.97438 * 18 17 16 37 37 H 1.07996 * 126.59082 * 0.03346 * 22 21 20 38 38 H 1.07998 * 125.88901 * 180.13214 * 23 22 21 39 39 H 1.08006 * 125.72379 * 179.97438 * 25 24 23 40 40 H 1.07999 * 120.52566 * 180.02562 * 26 20 19 41 41 H 1.09005 * 115.55180 * 34.42484 * 27 11 10 42 42 H 1.09000 * 117.49689 * 359.97438 * 28 27 11 43 43 H 1.08995 * 117.50024 * 145.02413 * 28 27 11 44 44 H 1.09005 * 117.50286 * 214.97890 * 29 27 11 45 45 H 1.09005 * 117.50440 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4979 -4.8134 0.9327 13 7 0.1440 -4.6763 -1.1301 14 6 -1.0804 -5.2372 -1.0783 15 8 -1.4216 -5.8614 -0.0931 16 6 -2.0104 -5.0927 -2.2225 17 6 -1.6367 -4.3783 -3.3664 18 6 -2.5316 -4.2669 -4.4114 19 7 -3.7256 -4.8223 -4.3447 20 6 -4.1215 -5.5061 -3.2845 21 7 -5.3992 -6.0744 -3.2659 22 6 -6.3036 -6.0819 -4.2972 23 6 -7.3956 -6.7320 -3.8531 24 7 -7.1737 -7.1063 -2.5841 25 6 -5.9821 -6.7186 -2.2206 26 6 -3.2827 -5.6663 -2.1889 27 6 1.8246 -6.1412 -0.1245 28 6 1.6662 -6.9264 -1.4280 29 6 1.0018 -7.4309 -0.1446 30 1 -0.4851 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6847 -3.7146 0.8906 33 1 2.6848 -3.7146 -0.8894 34 1 0.4162 -4.1778 -1.9163 35 1 -0.6609 -3.9200 -3.4306 36 1 -2.2496 -3.7167 -5.2970 37 1 -6.1653 -5.6511 -5.2778 38 1 -8.2964 -6.9167 -4.4195 39 1 -5.5341 -6.8818 -1.2515 40 1 -3.6095 -6.2259 -1.3249 41 1 2.7972 -6.1724 0.3668 42 1 1.0196 -6.5018 -2.1960 43 1 2.5344 -7.4744 -1.7941 44 1 1.4331 -8.3107 0.3330 45 1 -0.0816 -7.3380 -0.0687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716632264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:48 Heat of formation + Delta-G solvation = 105.145816 kcal Electronic energy + Delta-G solvation = -28964.713442 eV Core-core repulsion = 24984.653313 eV Total energy + Delta-G solvation = -3980.060129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.43844 -41.86039 -40.66805 -38.42465 -36.56186 -35.56674 -34.85159 -33.96001 -32.94663 -31.30549 -30.34484 -29.84009 -26.36951 -25.71142 -25.25898 -23.48926 -23.18961 -22.92077 -22.06920 -21.62013 -20.99390 -20.09928 -19.19255 -18.30531 -17.65766 -17.33440 -17.08218 -16.85454 -16.77940 -16.54534 -15.92089 -15.54249 -15.25900 -15.16575 -15.04780 -14.98649 -14.91494 -14.75043 -14.43302 -14.36704 -13.66092 -13.22302 -13.11947 -12.87509 -12.75684 -12.67892 -12.34368 -12.03813 -11.92472 -11.83482 -11.56585 -11.28899 -11.20085 -11.15801 -10.99209 -10.87302 -10.80025 -10.07927 -9.95733 -9.56668 -9.00312 -7.93824 -5.22801 -0.66432 -0.40406 1.03372 1.27340 1.48948 1.50858 1.59533 1.73192 1.94559 2.02384 2.56205 2.62718 2.93752 3.11922 3.30092 3.41781 3.44107 3.59658 3.62502 3.73191 3.76346 3.96014 4.08441 4.14060 4.18800 4.29648 4.41243 4.42740 4.49158 4.50716 4.60222 4.63889 4.78537 4.83334 4.89007 5.02164 5.06442 5.13152 5.22239 5.26158 5.37634 5.47159 5.54009 5.62802 5.97918 6.26792 6.39086 6.52137 6.87498 7.02696 7.35165 8.07638 8.31185 9.28914 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010649 B = 0.003015 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.740248 B = 9284.258212 C =11000.812186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.301 1.301 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.149 3.851 11 C 0.179 3.821 12 H 0.066 0.934 13 N -0.690 5.690 14 C 0.558 3.442 15 O -0.554 6.554 16 C -0.066 4.066 17 C -0.137 4.137 18 C 0.139 3.861 19 N -0.494 5.494 20 C 0.329 3.671 21 N -0.415 5.415 22 C -0.032 4.032 23 C -0.040 4.040 24 N -0.508 5.508 25 C 0.188 3.812 26 C -0.129 4.129 27 C -0.164 4.164 28 C -0.162 4.162 29 C -0.192 4.192 30 H 0.249 0.751 31 H 0.374 0.626 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.412 0.588 35 H 0.169 0.831 36 H 0.212 0.788 37 H 0.198 0.802 38 H 0.200 0.800 39 H 0.231 0.769 40 H 0.157 0.843 41 H 0.127 0.873 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.777 -14.662 -11.266 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.229 1.229 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.074 3.926 12 H 0.084 0.916 13 N -0.341 5.341 14 C 0.345 3.655 15 O -0.434 6.434 16 C -0.077 4.077 17 C -0.158 4.158 18 C -0.019 4.019 19 N -0.206 5.206 20 C 0.102 3.898 21 N -0.097 5.097 22 C -0.162 4.162 23 C -0.184 4.184 24 N -0.225 5.225 25 C -0.093 4.093 26 C -0.152 4.152 27 C -0.184 4.184 28 C -0.199 4.199 29 C -0.229 4.229 30 H 0.058 0.942 31 H 0.207 0.793 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.250 0.750 35 H 0.187 0.813 36 H 0.228 0.772 37 H 0.215 0.785 38 H 0.217 0.783 39 H 0.247 0.753 40 H 0.174 0.826 41 H 0.144 0.856 42 H 0.107 0.893 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.896 -15.319 -10.777 19.131 hybrid contribution 1.027 1.752 0.260 2.048 sum -2.868 -13.567 -10.517 17.404 Atomic orbital electron populations 1.69812 1.06522 1.25794 1.59580 1.25475 0.96228 1.00830 1.03842 0.85152 0.78413 0.80257 0.76377 1.18931 1.22085 1.22867 1.19624 0.91575 0.84971 1.40814 0.90251 1.42520 1.05645 1.00881 1.89533 1.21057 0.93304 0.83591 0.99785 1.20579 0.89524 0.93649 0.88866 0.91564 1.45788 1.13846 1.53488 1.20944 1.18208 0.81874 0.79026 0.86386 1.90709 1.76408 1.42462 1.33817 1.20180 0.94158 0.98323 0.95037 1.22727 1.03183 0.97331 0.92589 1.23198 0.85661 0.93700 0.99313 1.66927 1.19606 1.09150 1.24931 1.18064 0.85011 0.95056 0.91702 1.43220 1.10812 1.41913 1.13789 1.23281 0.90344 1.06872 0.95655 1.22877 1.00441 1.02789 0.92302 1.70351 1.14585 1.23197 1.14358 1.25856 0.90543 0.97872 0.95047 1.21630 0.93033 1.01560 0.99001 1.22613 1.01159 0.90856 1.03771 1.22976 1.03284 1.02853 0.90782 1.23290 1.00274 0.97228 1.02071 0.94239 0.79344 0.94320 0.93696 0.75034 0.81316 0.77184 0.78491 0.78329 0.75310 0.82582 0.85553 0.89253 0.87219 0.88064 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.18 13.06 21.65 0.28 -55.90 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.97 43.80 29.55 68.60 2.03 45.82 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 7 C -0.24 -12.16 9.99 84.03 0.84 -11.32 16 8 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.74 -33.69 5.43 -343.45 -1.87 -35.55 16 10 C 0.15 5.08 5.80 86.38 0.50 5.58 16 11 C 0.18 5.26 2.59 44.99 0.12 5.38 16 12 H 0.07 2.35 7.58 -2.39 -0.02 2.33 16 13 N -0.69 -18.62 3.01 -445.11 -1.34 -19.96 16 14 C 0.56 15.96 6.63 86.88 0.58 16.54 16 15 O -0.55 -18.86 13.47 -3.77 -0.05 -18.91 16 16 C -0.07 -1.58 5.91 -19.90 -0.12 -1.70 16 17 C -0.14 -2.59 9.61 22.64 0.22 -2.37 16 18 C 0.14 2.37 11.17 84.64 0.95 3.31 16 19 N -0.49 -10.67 9.87 -192.94 -1.90 -12.58 16 20 C 0.33 7.70 7.50 132.77 1.00 8.69 16 21 N -0.41 -9.59 2.98 -355.90 -1.06 -10.65 16 22 C -0.03 -0.67 11.17 83.03 0.93 0.26 16 23 C -0.04 -0.84 11.85 83.51 0.99 0.15 16 24 N -0.51 -12.86 11.24 -199.68 -2.24 -15.10 16 25 C 0.19 4.30 11.89 179.99 2.14 6.44 16 26 C -0.13 -3.07 9.07 22.76 0.21 -2.86 16 27 C -0.16 -3.87 5.70 -10.80 -0.06 -3.93 16 28 C -0.16 -3.28 9.74 30.62 0.30 -2.98 16 29 C -0.19 -4.52 9.82 30.62 0.30 -4.22 16 30 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.37 18.54 7.33 -92.70 -0.68 17.86 16 32 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.41 10.01 6.74 -92.71 -0.62 9.38 16 35 H 0.17 2.53 6.53 -2.91 -0.02 2.51 16 36 H 0.21 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.20 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.23 3.98 7.07 -2.91 -0.02 3.96 16 40 H 0.16 3.52 6.46 -2.91 -0.02 3.50 16 41 H 0.13 2.62 8.11 -2.38 -0.02 2.60 16 42 H 0.09 1.82 6.67 -2.39 -0.02 1.81 16 43 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 45 H 0.09 2.68 5.01 -2.38 -0.01 2.67 16 Total: -1.00 -70.02 378.27 2.93 -67.09 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.25 Total: 42.16 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 9.34 Total: 13.58 kcal Atomic # 7 Polarization: -141.61 SS G_CDS: -8.13 Total: -149.75 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -70.02 2.93 -67.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716632264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.232 kcal (2) G-P(sol) polarization free energy of solvation -70.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds