Wall clock time and date at job start Wed Apr 1 2020 00:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47010 * 2 1 4 4 C 1.50702 * 109.47028 * 119.99230 * 2 1 3 5 5 O 1.21281 * 119.99779 * 106.61054 * 4 2 1 6 6 N 1.34772 * 120.00284 * 286.61642 * 4 2 1 7 7 C 1.46501 * 120.00001 * 180.02562 * 6 4 2 8 8 C 1.53005 * 117.49764 * 223.62092 * 7 6 4 9 9 C 1.53001 * 117.49839 * 154.99972 * 7 6 4 10 10 N 1.46895 * 109.47067 * 239.99362 * 2 1 3 11 11 C 1.46894 * 111.00431 * 312.29432 * 10 2 1 12 12 C 1.53237 * 109.34115 * 187.25585 * 11 10 2 13 13 N 1.47077 * 108.51994 * 306.16518 * 12 11 10 14 14 C 1.34770 * 120.88572 * 231.18417 * 13 12 11 15 15 O 1.21283 * 119.99731 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00210 * 179.72732 * 14 13 12 17 17 S 1.81002 * 109.47283 * 180.02562 * 16 14 13 18 18 C 1.76196 * 99.99927 * 180.02562 * 17 16 14 19 19 H 1.08008 * 120.00406 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00107 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99552 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00388 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46604 * 90.00238 * 22 20 18 24 24 H 1.48498 * 109.47702 * 210.00374 * 22 20 18 25 25 H 1.48501 * 109.47252 * 330.00795 * 22 20 18 26 26 C 1.47087 * 118.23485 * 51.46374 * 13 12 11 27 27 C 1.46898 * 110.99933 * 76.60240 * 10 2 1 28 28 H 1.08993 * 109.47255 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46812 * 300.00280 * 1 2 3 30 30 H 1.08997 * 109.46943 * 60.00499 * 1 2 3 31 31 H 0.96998 * 119.99994 * 359.97438 * 6 4 2 32 32 H 1.08996 * 115.55259 * 9.32650 * 7 6 4 33 33 H 1.09003 * 117.49760 * 359.97438 * 8 7 6 34 34 H 1.08997 * 117.50013 * 145.01943 * 8 7 6 35 35 H 1.09007 * 117.49775 * 214.98071 * 9 7 6 36 36 H 1.08997 * 117.49881 * 359.97339 * 9 7 6 37 37 H 1.08997 * 109.48862 * 67.29340 * 11 10 2 38 38 H 1.08999 * 109.49163 * 307.21582 * 11 10 2 39 39 H 1.09004 * 109.62567 * 186.46111 * 12 11 10 40 40 H 1.08994 * 109.63062 * 65.87936 * 12 11 10 41 41 H 1.09004 * 109.47122 * 300.00443 * 16 14 13 42 42 H 1.09003 * 109.47109 * 60.00377 * 16 14 13 43 43 H 0.97004 * 119.99874 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.62637 * 68.24540 * 26 13 12 45 45 H 1.08994 * 109.62988 * 188.82591 * 26 13 12 46 46 H 1.09010 * 109.49007 * 292.70127 * 27 10 2 47 47 H 1.09003 * 109.49672 * 52.77946 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.5175 -1.8177 1.1359 6 7 1.9423 -0.1149 2.4363 7 6 2.4311 -0.8051 3.6324 8 6 1.5561 -0.7512 4.8864 9 6 2.8531 0.0579 4.8233 10 7 2.0196 -0.6926 -1.1993 11 6 1.3251 -1.9731 -1.3883 12 6 1.9850 -2.7438 -2.5367 13 7 2.0207 -1.8748 -3.7227 14 6 1.5545 -2.3068 -4.9112 15 8 1.0974 -3.4256 -5.0128 16 6 1.5951 -1.3974 -6.1122 17 16 0.9026 -2.2593 -7.5453 18 6 1.0706 -1.0025 -8.7687 19 1 1.5015 -0.0475 -8.5064 20 6 0.6500 -1.2401 -10.0700 21 7 0.1252 -2.4041 -10.3899 22 14 0.8274 0.0925 -11.3669 23 1 2.1478 -0.0385 -12.0338 24 1 -0.2530 -0.0512 -12.3755 25 1 0.7286 1.4268 -10.7225 26 6 2.5843 -0.5238 -3.5789 27 6 1.8955 0.1615 -2.3880 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.5545 0.7710 2.5120 32 1 2.9937 -1.7207 3.4500 33 1 0.6169 -0.2018 4.8215 34 1 1.5428 -1.6315 5.5291 35 1 3.6932 -0.2901 5.4244 36 1 2.7674 1.1392 4.7166 37 1 0.2785 -1.7870 -1.6292 38 1 1.3891 -2.5602 -0.4722 39 1 1.4052 -3.6401 -2.7569 40 1 3.0008 -3.0213 -2.2554 41 1 1.0088 -0.5012 -5.9093 42 1 2.6275 -1.1167 -6.3206 43 1 -0.1691 -2.5700 -11.2992 44 1 3.6567 -0.5921 -3.3957 45 1 2.4010 0.0482 -4.4884 46 1 0.8408 0.3178 -2.6150 47 1 2.3732 1.1225 -2.1970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041791439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:17 Heat of formation + Delta-G solvation = -24.271767 kcal Electronic energy + Delta-G solvation = -27353.650697 eV Core-core repulsion = 23471.129801 eV Total energy + Delta-G solvation = -3882.520896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76847 -39.63908 -38.16923 -37.14639 -34.94511 -33.34640 -32.41840 -31.54626 -30.92610 -28.92143 -26.73034 -25.48664 -24.86264 -23.76803 -22.92095 -22.27419 -21.24319 -20.52804 -18.76840 -17.70231 -17.55246 -17.17006 -16.58287 -15.83196 -15.51177 -15.44232 -15.33927 -15.04844 -14.80313 -14.79636 -14.57914 -14.13716 -13.87920 -13.38696 -13.23866 -13.14008 -12.80664 -12.70896 -12.63431 -12.20289 -12.14838 -12.11191 -11.83367 -11.76181 -11.43627 -11.24575 -11.08970 -11.05644 -11.03080 -11.00339 -10.74375 -10.03322 -9.79204 -9.29291 -9.20828 -9.05709 -8.74097 -8.32200 -8.20446 -6.48550 -6.20483 -3.90902 2.22491 2.50048 2.96921 3.10242 3.22742 3.26471 3.30597 3.39870 3.57622 3.68805 4.20517 4.21377 4.25842 4.41274 4.46122 4.49025 4.57856 4.73271 4.84601 5.00221 5.02943 5.09061 5.10978 5.14439 5.17435 5.26082 5.30132 5.33933 5.42796 5.50610 5.52240 5.53343 5.62622 5.72873 5.78412 5.86277 5.91956 6.05686 6.07166 6.13014 6.56247 6.68009 6.79274 7.06654 7.60090 7.64430 7.87328 8.36045 8.61472 9.24613 10.86912 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032406 B = 0.001928 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.827770 B =14522.833664 C =14949.622971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.066 3.934 3 H 0.106 0.894 4 C 0.526 3.474 5 O -0.515 6.515 6 N -0.706 5.706 7 C 0.082 3.918 8 C -0.195 4.195 9 C -0.190 4.190 10 N -0.516 5.516 11 C 0.038 3.962 12 C 0.121 3.879 13 N -0.622 5.622 14 C 0.534 3.466 15 O -0.518 6.518 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.115 3.885 27 C 0.040 3.960 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.400 0.600 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.045 0.955 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 10.395 30.342 32.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.046 4.046 3 H 0.123 0.877 4 C 0.312 3.688 5 O -0.388 6.388 6 N -0.357 5.357 7 C -0.024 4.024 8 C -0.233 4.233 9 C -0.228 4.228 10 N -0.240 5.240 11 C -0.090 4.090 12 C -0.002 4.002 13 N -0.359 5.359 14 C 0.322 3.678 15 O -0.392 6.392 16 C -0.301 4.301 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.009 4.009 27 C -0.088 4.088 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.234 0.766 32 H 0.156 0.844 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.063 0.937 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.670 7.673 29.978 31.162 hybrid contribution -0.382 3.006 -0.619 3.092 sum 3.288 10.678 29.360 31.414 Atomic orbital electron populations 1.22406 0.94699 1.03743 1.03312 1.21599 0.94546 0.98591 0.89885 0.87658 1.20523 0.78046 0.86403 0.83819 1.90683 1.43013 1.19521 1.85633 1.45386 1.63644 1.20713 1.06004 1.21590 1.01565 0.98939 0.80309 1.23432 0.95317 1.03246 1.01329 1.23378 0.99092 0.98757 1.01610 1.61794 1.56717 1.04161 1.01326 1.22702 0.95413 0.90594 1.00272 1.21587 1.01707 0.93735 0.83168 1.48192 1.63120 1.15292 1.09317 1.20326 0.76444 0.87777 0.83220 1.90689 1.44351 1.20387 1.83799 1.23546 1.05302 1.02367 0.98840 1.85422 1.79636 1.20778 0.97596 1.22862 1.47915 1.01411 0.96141 0.90962 1.24992 0.94546 0.96274 0.97780 1.70023 1.38533 1.21873 1.19818 0.86173 0.78027 0.80951 0.80366 1.20265 1.20770 1.19723 1.21868 0.98166 0.82980 0.97879 1.22652 0.99970 0.96227 0.89999 0.91158 0.91547 0.90939 0.76575 0.84403 0.88534 0.87964 0.87842 0.88480 0.94199 0.88030 0.88678 0.90997 0.89404 0.89267 0.92199 0.90625 0.88799 0.93717 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 8.31 37.16 0.31 -0.88 16 2 C 0.07 0.50 2.70 -68.87 -0.19 0.31 16 3 H 0.11 0.56 7.84 -51.93 -0.41 0.15 16 4 C 0.53 4.73 6.95 -10.99 -0.08 4.66 16 5 O -0.51 -6.70 13.93 5.56 0.08 -6.63 16 6 N -0.71 -4.27 5.57 -53.80 -0.30 -4.57 16 7 C 0.08 0.51 6.43 -67.93 -0.44 0.08 16 8 C -0.19 -0.88 10.46 -26.73 -0.28 -1.16 16 9 C -0.19 -0.79 10.45 -26.73 -0.28 -1.07 16 10 N -0.52 -5.23 4.31 -227.44 -0.98 -6.21 16 11 C 0.04 0.45 4.25 -3.70 -0.02 0.44 16 12 C 0.12 1.70 6.60 -3.60 -0.02 1.68 16 13 N -0.62 -9.47 3.00 -172.18 -0.52 -9.99 16 14 C 0.53 10.55 7.73 -10.99 -0.08 10.46 16 15 O -0.52 -12.25 15.31 5.56 0.09 -12.17 16 16 C -0.15 -3.09 4.52 36.01 0.16 -2.93 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C 0.11 1.32 6.53 -3.36 -0.02 1.30 16 27 C 0.04 0.37 5.38 -3.46 -0.02 0.35 16 28 H 0.07 0.57 6.48 -51.93 -0.34 0.23 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.49 7.13 -51.93 -0.37 0.12 16 31 H 0.40 1.31 8.83 -40.82 -0.36 0.95 16 32 H 0.14 1.11 7.40 -51.93 -0.38 0.72 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.04 0.48 6.69 -51.93 -0.35 0.13 16 38 H 0.10 1.27 5.95 -51.93 -0.31 0.96 16 39 H 0.09 1.48 7.06 -51.93 -0.37 1.11 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.66 7.69 -51.91 -0.40 1.26 16 42 H 0.09 1.71 7.98 -51.92 -0.41 1.29 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 1.04 6.02 -51.93 -0.31 0.73 16 46 H 0.04 0.44 7.20 -51.92 -0.37 0.06 16 47 H 0.09 0.60 7.92 -51.93 -0.41 0.19 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -36.60 389.35 -10.32 -46.91 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.30 Total: -0.42 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.75 Total: 0.25 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -1.06 Total: -46.31 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.16 Total: -18.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.60 -10.32 -46.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041791439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.639 kcal (2) G-P(sol) polarization free energy of solvation -36.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds