Wall clock time and date at job start Wed Apr 1 2020 00:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47010 * 2 1 4 4 C 1.50702 * 109.47028 * 119.99230 * 2 1 3 5 5 O 1.21281 * 119.99779 * 106.61054 * 4 2 1 6 6 N 1.34772 * 120.00284 * 286.61642 * 4 2 1 7 7 C 1.46501 * 120.00001 * 180.02562 * 6 4 2 8 8 C 1.53005 * 117.49764 * 223.62092 * 7 6 4 9 9 C 1.53001 * 117.49839 * 154.99972 * 7 6 4 10 10 N 1.46895 * 109.47067 * 239.99362 * 2 1 3 11 11 C 1.46894 * 111.00431 * 312.29432 * 10 2 1 12 12 C 1.53237 * 109.34115 * 187.25585 * 11 10 2 13 13 N 1.47077 * 108.51994 * 306.16518 * 12 11 10 14 14 C 1.34770 * 120.88572 * 231.18417 * 13 12 11 15 15 O 1.21283 * 119.99731 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00210 * 179.72732 * 14 13 12 17 17 S 1.81002 * 109.47283 * 180.02562 * 16 14 13 18 18 C 1.76196 * 99.99927 * 180.02562 * 17 16 14 19 19 H 1.08008 * 120.00406 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00107 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99552 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00388 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46604 * 90.00238 * 22 20 18 24 24 H 1.48498 * 109.47702 * 210.00374 * 22 20 18 25 25 H 1.48501 * 109.47252 * 330.00795 * 22 20 18 26 26 C 1.47087 * 118.23485 * 51.46374 * 13 12 11 27 27 C 1.46898 * 110.99933 * 76.60240 * 10 2 1 28 28 H 1.08993 * 109.47255 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46812 * 300.00280 * 1 2 3 30 30 H 1.08997 * 109.46943 * 60.00499 * 1 2 3 31 31 H 0.96998 * 119.99994 * 359.97438 * 6 4 2 32 32 H 1.08996 * 115.55259 * 9.32650 * 7 6 4 33 33 H 1.09003 * 117.49760 * 359.97438 * 8 7 6 34 34 H 1.08997 * 117.50013 * 145.01943 * 8 7 6 35 35 H 1.09007 * 117.49775 * 214.98071 * 9 7 6 36 36 H 1.08997 * 117.49881 * 359.97339 * 9 7 6 37 37 H 1.08997 * 109.48862 * 67.29340 * 11 10 2 38 38 H 1.08999 * 109.49163 * 307.21582 * 11 10 2 39 39 H 1.09004 * 109.62567 * 186.46111 * 12 11 10 40 40 H 1.08994 * 109.63062 * 65.87936 * 12 11 10 41 41 H 1.09004 * 109.47122 * 300.00443 * 16 14 13 42 42 H 1.09003 * 109.47109 * 60.00377 * 16 14 13 43 43 H 0.97004 * 119.99874 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.62637 * 68.24540 * 26 13 12 45 45 H 1.08994 * 109.62988 * 188.82591 * 26 13 12 46 46 H 1.09010 * 109.49007 * 292.70127 * 27 10 2 47 47 H 1.09003 * 109.49672 * 52.77946 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.5175 -1.8177 1.1359 6 7 1.9423 -0.1149 2.4363 7 6 2.4311 -0.8051 3.6324 8 6 1.5561 -0.7512 4.8864 9 6 2.8531 0.0579 4.8233 10 7 2.0196 -0.6926 -1.1993 11 6 1.3251 -1.9731 -1.3883 12 6 1.9850 -2.7438 -2.5367 13 7 2.0207 -1.8748 -3.7227 14 6 1.5545 -2.3068 -4.9112 15 8 1.0974 -3.4256 -5.0128 16 6 1.5951 -1.3974 -6.1122 17 16 0.9026 -2.2593 -7.5453 18 6 1.0706 -1.0025 -8.7687 19 1 1.5015 -0.0475 -8.5064 20 6 0.6500 -1.2401 -10.0700 21 7 0.1252 -2.4041 -10.3899 22 14 0.8274 0.0925 -11.3669 23 1 2.1478 -0.0385 -12.0338 24 1 -0.2530 -0.0512 -12.3755 25 1 0.7286 1.4268 -10.7225 26 6 2.5843 -0.5238 -3.5789 27 6 1.8955 0.1615 -2.3880 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.5545 0.7710 2.5120 32 1 2.9937 -1.7207 3.4500 33 1 0.6169 -0.2018 4.8215 34 1 1.5428 -1.6315 5.5291 35 1 3.6932 -0.2901 5.4244 36 1 2.7674 1.1392 4.7166 37 1 0.2785 -1.7870 -1.6292 38 1 1.3891 -2.5602 -0.4722 39 1 1.4052 -3.6401 -2.7569 40 1 3.0008 -3.0213 -2.2554 41 1 1.0088 -0.5012 -5.9093 42 1 2.6275 -1.1167 -6.3206 43 1 -0.1691 -2.5700 -11.2992 44 1 3.6567 -0.5921 -3.3957 45 1 2.4010 0.0482 -4.4884 46 1 0.8408 0.3178 -2.6150 47 1 2.3732 1.1225 -2.1970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041791439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:16 Heat of formation + Delta-G solvation = -51.592905 kcal Electronic energy + Delta-G solvation = -27354.835431 eV Core-core repulsion = 23471.129801 eV Total energy + Delta-G solvation = -3883.705629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59902 -40.76539 -39.09378 -37.84992 -36.05382 -34.57651 -33.99180 -32.65291 -31.76062 -30.30406 -27.78987 -27.49558 -25.60449 -24.76752 -23.25387 -22.98695 -22.07478 -21.32068 -20.18871 -19.40536 -18.33062 -18.15504 -17.51088 -17.00552 -16.86760 -16.74356 -16.36635 -16.18225 -15.89256 -15.72283 -15.54472 -15.24728 -14.90731 -14.58682 -14.50126 -14.40666 -13.73545 -13.57218 -13.43488 -13.28676 -13.16029 -13.10576 -12.88962 -12.85232 -12.58306 -12.55645 -12.40910 -12.22732 -12.10747 -11.98868 -11.70434 -11.44394 -11.13489 -10.96516 -10.69737 -10.25537 -9.84097 -9.70689 -9.27765 -8.67274 -8.33610 -6.12394 1.25049 1.43586 1.45980 1.54993 1.56715 1.59292 1.94949 2.08822 2.28059 2.86900 3.00585 3.01768 3.25140 3.62533 3.65074 3.84416 3.85329 3.95683 4.02409 4.06620 4.08165 4.09611 4.19857 4.23421 4.31481 4.37728 4.44455 4.55445 4.60678 4.71553 4.74879 4.78307 4.80224 4.83983 4.90136 5.00908 5.04645 5.15424 5.22248 5.42615 5.45648 5.56112 5.83932 5.96757 6.20665 6.30218 6.57564 7.07348 7.11261 7.29621 8.75678 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032406 B = 0.001928 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.827770 B =14522.833664 C =14949.622971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.070 3.930 3 H 0.140 0.860 4 C 0.522 3.478 5 O -0.565 6.565 6 N -0.690 5.690 7 C 0.055 3.945 8 C -0.187 4.187 9 C -0.173 4.173 10 N -0.527 5.527 11 C 0.054 3.946 12 C 0.121 3.879 13 N -0.609 5.609 14 C 0.532 3.468 15 O -0.569 6.569 16 C -0.121 4.121 17 S -0.155 6.155 18 C -0.544 4.544 19 H 0.085 0.915 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.255 1.255 26 C 0.104 3.896 27 C 0.045 3.955 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.416 0.584 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.036 0.964 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.044 0.956 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.194 14.683 31.857 35.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.042 4.042 3 H 0.157 0.843 4 C 0.308 3.692 5 O -0.443 6.443 6 N -0.341 5.341 7 C -0.052 4.052 8 C -0.226 4.226 9 C -0.211 4.211 10 N -0.251 5.251 11 C -0.074 4.074 12 C -0.002 4.002 13 N -0.344 5.344 14 C 0.320 3.680 15 O -0.448 6.448 16 C -0.272 4.272 17 S 0.072 5.928 18 C -0.692 4.692 19 H 0.103 0.897 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.179 1.179 26 C -0.018 4.018 27 C -0.083 4.083 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.254 0.746 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.054 0.946 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.121 0.879 46 H 0.062 0.938 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.304 12.042 31.575 34.066 hybrid contribution -0.510 1.678 -0.875 1.960 sum 3.794 13.720 30.700 33.840 Atomic orbital electron populations 1.22362 0.93793 1.02763 1.04706 1.21710 0.95132 0.99481 0.87854 0.84255 1.20868 0.77459 0.85885 0.84945 1.90671 1.45538 1.21678 1.86379 1.45228 1.62607 1.21112 1.05168 1.21561 1.03304 0.99219 0.81068 1.23483 0.95921 1.03516 0.99641 1.23448 0.98933 0.99317 0.99388 1.61722 1.56861 1.03819 1.02693 1.22418 0.94950 0.91588 0.98458 1.21617 1.01667 0.93441 0.83497 1.48198 1.61345 1.16866 1.07948 1.20222 0.76590 0.86961 0.84242 1.90672 1.47076 1.22364 1.84701 1.23347 1.05969 1.02041 0.95816 1.85657 1.81117 1.24036 1.01968 1.23200 1.47968 1.01555 0.96472 0.89677 1.26156 0.93797 0.98893 1.00391 1.70197 1.39749 1.24417 1.20505 0.84934 0.78174 0.77905 0.76839 1.19379 1.20403 1.17918 1.22244 0.99010 0.80880 0.99638 1.22686 1.00063 0.97029 0.88520 0.93346 0.89026 0.90640 0.74645 0.87002 0.87497 0.87891 0.87404 0.86922 0.94605 0.88901 0.90968 0.90835 0.87111 0.87327 0.92038 0.89411 0.87950 0.93772 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 8.31 71.98 0.60 -1.26 16 2 C 0.07 0.85 2.70 44.17 0.12 0.97 16 3 H 0.14 0.79 7.84 -2.39 -0.02 0.77 16 4 C 0.52 8.68 6.95 87.66 0.61 9.29 16 5 O -0.57 -14.91 13.93 -3.03 -0.04 -14.95 16 6 N -0.69 -6.97 5.57 -442.53 -2.46 -9.44 16 7 C 0.05 0.63 6.43 44.99 0.29 0.92 16 8 C -0.19 -1.36 10.46 30.60 0.32 -1.04 16 9 C -0.17 -1.06 10.45 30.60 0.32 -0.74 16 10 N -0.53 -9.59 4.31 -873.49 -3.76 -13.35 16 11 C 0.05 1.28 4.25 86.38 0.37 1.65 16 12 C 0.12 3.48 6.60 86.35 0.57 4.05 16 13 N -0.61 -18.23 3.00 -817.05 -2.45 -20.68 16 14 C 0.53 21.25 7.73 87.66 0.68 21.93 16 15 O -0.57 -28.24 15.31 -3.04 -0.05 -28.29 16 16 C -0.12 -4.92 4.52 71.24 0.32 -4.59 16 17 S -0.16 -8.76 20.57 -56.49 -1.16 -9.93 16 18 C -0.54 -31.08 9.50 67.96 0.65 -30.44 16 19 H 0.09 4.46 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.70 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 22 Si 1.00 43.44 29.55 68.60 2.03 45.46 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 26 C 0.10 2.14 6.53 86.50 0.57 2.70 16 27 C 0.04 0.68 5.38 86.54 0.47 1.15 16 28 H 0.05 0.74 6.48 -2.39 -0.02 0.72 16 29 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.78 7.13 -2.39 -0.02 0.77 16 31 H 0.42 1.35 8.83 -92.71 -0.82 0.53 16 32 H 0.11 1.90 7.40 -2.39 -0.02 1.88 16 33 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.04 0.87 6.69 -2.39 -0.02 0.85 16 38 H 0.09 2.41 5.95 -2.39 -0.01 2.40 16 39 H 0.07 2.41 7.06 -2.39 -0.02 2.40 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.11 3.99 7.69 -2.39 -0.02 3.97 16 42 H 0.11 3.99 7.98 -2.39 -0.02 3.97 16 43 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.10 1.94 6.02 -2.39 -0.01 1.93 16 46 H 0.04 0.71 7.20 -2.38 -0.02 0.69 16 47 H 0.12 1.05 7.92 -2.39 -0.02 1.03 16 Total: -1.00 -84.21 389.35 -1.11 -85.32 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.17 Total: 16.24 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 6.33 Total: 5.75 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -8.39 Total: -99.61 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.09 Total: -43.24 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.93 kcal Total: -84.21 -1.11 -85.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041791439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.728 kcal (2) G-P(sol) polarization free energy of solvation -84.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds