Wall clock time and date at job start Wed Apr 1 2020 00:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47342 * 2 1 4 4 C 1.50707 * 109.46966 * 240.00256 * 2 1 3 5 5 O 1.21291 * 119.99523 * 268.99489 * 4 2 1 6 6 N 1.34772 * 120.00426 * 88.99667 * 4 2 1 7 7 C 1.46502 * 120.00045 * 180.02562 * 6 4 2 8 8 C 1.53001 * 117.49247 * 223.61904 * 7 6 4 9 9 C 1.52999 * 117.49585 * 155.00055 * 7 6 4 10 10 N 1.46895 * 109.47102 * 120.00134 * 2 1 3 11 11 C 1.46904 * 110.99991 * 172.41060 * 10 2 1 12 12 C 1.53234 * 109.36253 * 172.75818 * 11 10 2 13 13 N 1.47079 * 108.52145 * 53.81448 * 12 11 10 14 14 C 1.34783 * 120.88195 * 128.83952 * 13 12 11 15 15 O 1.21283 * 119.99950 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00086 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.47279 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99918 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99905 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99679 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00168 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99646 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47057 * 90.00661 * 22 20 18 24 24 H 1.48502 * 109.47012 * 210.00137 * 22 20 18 25 25 H 1.48497 * 109.47688 * 330.00358 * 22 20 18 26 26 C 1.47075 * 118.23742 * 308.81504 * 13 12 11 27 27 C 1.46894 * 111.02233 * 48.08978 * 10 2 1 28 28 H 1.09002 * 109.47342 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47219 * 300.00220 * 1 2 3 30 30 H 1.09007 * 109.47325 * 60.00139 * 1 2 3 31 31 H 0.97003 * 119.99865 * 359.97438 * 6 4 2 32 32 H 1.08990 * 115.54851 * 9.32190 * 7 6 4 33 33 H 1.08993 * 117.50396 * 359.97438 * 8 7 6 34 34 H 1.09006 * 117.49516 * 145.01839 * 8 7 6 35 35 H 1.09005 * 117.49529 * 214.97221 * 9 7 6 36 36 H 1.08997 * 117.50531 * 359.96635 * 9 7 6 37 37 H 1.08993 * 109.49722 * 52.77961 * 11 10 2 38 38 H 1.09002 * 109.48903 * 292.72845 * 11 10 2 39 39 H 1.09003 * 109.62716 * 173.52243 * 12 11 10 40 40 H 1.08998 * 109.63254 * 294.10298 * 12 11 10 41 41 H 1.09003 * 109.46882 * 299.99935 * 16 14 13 42 42 H 1.09007 * 109.47223 * 59.99578 * 16 14 13 43 43 H 0.97003 * 119.99778 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.63180 * 170.89551 * 26 13 12 45 45 H 1.09001 * 109.63137 * 291.47343 * 26 13 12 46 46 H 1.08993 * 109.47334 * 67.26729 * 27 10 2 47 47 H 1.08998 * 109.51001 * 307.21360 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.2517 -1.9028 -1.1952 6 7 2.2376 -0.0209 -2.3702 7 6 2.7254 -0.7116 -3.5665 8 6 3.8273 -0.0268 -4.3776 9 6 2.3998 -0.0872 -4.9248 10 7 2.0196 -0.6925 1.1994 11 6 3.4768 -0.8710 1.1462 12 6 3.9694 -1.4295 2.4854 13 7 3.2045 -2.6475 2.7934 14 6 3.8322 -3.7938 3.1229 15 8 5.0436 -3.8305 3.1680 16 6 3.0288 -5.0302 3.4341 17 16 4.1501 -6.3929 3.8362 18 6 2.9783 -7.6716 4.1473 19 1 1.9212 -7.4680 4.0611 20 6 3.4140 -8.9406 4.5030 21 7 4.7024 -9.1886 4.6085 22 14 2.1717 -10.2959 4.8335 23 1 1.8818 -11.0205 3.5700 24 1 2.7279 -11.2445 5.8316 25 1 0.9180 -9.7005 5.3614 26 6 1.7365 -2.5812 2.7328 27 6 1.3317 -1.9773 1.3838 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.0618 0.9327 -2.3985 32 1 2.7475 -1.7995 -3.5049 33 1 4.1890 0.9377 -4.0213 34 1 4.5748 -0.6645 -4.8497 35 1 2.2081 -0.7645 -5.7571 36 1 1.8223 0.8372 -4.9284 37 1 3.9542 0.0900 0.9552 38 1 3.7289 -1.5676 0.3467 39 1 5.0298 -1.6715 2.4133 40 1 3.8123 -0.6901 3.2707 41 1 2.3750 -4.8342 4.2840 42 1 2.4261 -5.2998 2.5667 43 1 5.0068 -10.0755 4.8568 44 1 1.3205 -3.5845 2.8243 45 1 1.3646 -1.9524 3.5418 46 1 1.6133 -2.6587 0.5811 47 1 0.2535 -1.8189 1.3650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041791443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:19 Heat of formation + Delta-G solvation = -51.418882 kcal Electronic energy + Delta-G solvation = -27829.435134 eV Core-core repulsion = 23945.737050 eV Total energy + Delta-G solvation = -3883.698083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.84178 -40.78754 -39.00591 -37.82503 -35.95495 -34.60284 -34.06547 -33.01672 -31.47532 -30.68412 -27.83847 -27.40769 -25.70759 -24.29532 -23.31885 -22.99747 -22.19090 -21.35873 -20.41436 -19.59258 -18.40055 -18.21142 -17.48793 -17.07898 -16.89324 -16.81584 -16.43049 -16.16312 -15.95737 -15.80955 -15.64908 -15.32797 -15.00131 -14.67870 -14.49120 -14.11419 -13.77878 -13.58645 -13.34778 -13.21289 -13.18430 -12.90778 -12.89667 -12.82682 -12.64893 -12.57758 -12.43548 -12.24724 -12.07551 -11.78692 -11.72211 -11.53145 -11.33735 -11.15915 -10.91740 -10.30090 -9.85319 -9.79189 -9.23464 -8.70259 -8.36049 -6.15193 1.22655 1.41585 1.43247 1.46417 1.52857 1.55438 2.03928 2.06130 2.25753 2.72495 2.94043 2.97797 3.22494 3.61240 3.65511 3.78091 3.80643 3.92157 4.00087 4.01269 4.03007 4.19003 4.20565 4.26006 4.34488 4.41164 4.43513 4.47684 4.67053 4.69399 4.71487 4.76065 4.87039 4.88046 4.94594 4.97427 5.15720 5.16536 5.26588 5.39754 5.46844 5.49399 5.78276 5.85075 6.18214 6.26646 6.47769 7.04525 7.09263 7.20414 8.73492 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.002395 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.873551 B =11690.372604 C =12109.412753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.139 0.861 4 C 0.482 3.518 5 O -0.580 6.580 6 N -0.685 5.685 7 C 0.048 3.952 8 C -0.188 4.188 9 C -0.167 4.167 10 N -0.498 5.498 11 C 0.039 3.961 12 C 0.119 3.881 13 N -0.609 5.609 14 C 0.532 3.468 15 O -0.568 6.568 16 C -0.121 4.121 17 S -0.153 6.153 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.256 1.256 26 C 0.108 3.892 27 C 0.025 3.975 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.418 0.582 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.272 0.728 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.041 0.959 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.183 28.685 -15.853 35.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 H 0.156 0.844 4 C 0.268 3.732 5 O -0.459 6.459 6 N -0.337 5.337 7 C -0.059 4.059 8 C -0.227 4.227 9 C -0.205 4.205 10 N -0.221 5.221 11 C -0.089 4.089 12 C -0.003 4.003 13 N -0.343 5.343 14 C 0.319 3.681 15 O -0.447 6.447 16 C -0.272 4.272 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.823 3.177 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.180 1.180 26 C -0.014 4.014 27 C -0.103 4.103 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.256 0.744 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.041 0.959 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.059 0.941 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.234 27.987 -15.286 33.810 hybrid contribution -1.131 -1.391 -0.747 1.942 sum -12.365 26.596 -16.034 33.426 Atomic orbital electron populations 1.21915 0.89898 1.03048 1.05071 1.22184 0.98872 0.99589 0.83685 0.84390 1.22670 0.76623 0.87747 0.86138 1.90729 1.53054 1.17539 1.84584 1.45454 1.66079 1.12719 1.09439 1.21538 1.03720 0.96503 0.84092 1.23473 0.92716 1.03260 1.03217 1.23439 0.98127 1.03696 0.95219 1.62522 1.04063 1.21380 1.34149 1.22539 0.88894 1.01418 0.96080 1.21711 0.95999 0.85365 0.97259 1.48160 1.08460 1.09456 1.68224 1.20155 0.87558 0.84457 0.75885 1.90656 1.15811 1.84762 1.53513 1.23337 1.02510 0.96026 1.05353 1.85575 1.13154 1.03806 1.89995 1.23184 0.94419 0.97271 1.54431 0.89931 1.26177 0.98139 1.00848 0.94106 1.70195 1.15738 1.23050 1.45842 0.84917 0.77784 0.76683 0.78357 1.19378 1.20079 1.18004 1.22112 0.77790 1.02751 0.98769 1.22802 1.00740 0.90544 0.96248 0.92888 0.88532 0.89593 0.74405 0.87942 0.87163 0.88334 0.87559 0.86393 0.87202 0.95856 0.91050 0.88631 0.87145 0.88232 0.91948 0.89277 0.88207 0.94121 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.53 71.98 0.61 -0.51 16 2 C 0.07 0.81 2.96 44.17 0.13 0.94 16 3 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 4 C 0.48 8.79 6.01 87.66 0.53 9.31 16 5 O -0.58 -17.23 12.08 -3.06 -0.04 -17.27 16 6 N -0.69 -8.33 5.57 -442.53 -2.46 -10.79 16 7 C 0.05 0.72 6.43 44.99 0.29 1.00 16 8 C -0.19 -2.00 10.46 30.59 0.32 -1.68 16 9 C -0.17 -1.42 10.45 30.59 0.32 -1.10 16 10 N -0.50 -8.77 4.71 -874.45 -4.12 -12.89 16 11 C 0.04 0.87 4.98 86.38 0.43 1.30 16 12 C 0.12 3.18 6.60 86.35 0.57 3.75 16 13 N -0.61 -19.27 3.01 -817.94 -2.46 -21.73 16 14 C 0.53 22.60 7.73 87.66 0.68 23.28 16 15 O -0.57 -29.15 15.32 -3.04 -0.05 -29.20 16 16 C -0.12 -5.35 4.52 71.24 0.32 -5.03 16 17 S -0.15 -8.99 20.57 -56.49 -1.16 -10.15 16 18 C -0.55 -32.41 9.50 67.95 0.65 -31.76 16 19 H 0.08 4.56 7.80 -2.91 -0.02 4.53 16 20 C 0.01 0.70 5.49 84.86 0.47 1.16 16 21 N -0.91 -57.69 13.22 21.65 0.29 -57.41 16 22 Si 1.00 44.87 29.55 68.60 2.03 46.90 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 26 C 0.11 2.55 6.50 86.35 0.56 3.11 16 27 C 0.02 0.53 4.76 86.38 0.41 0.94 16 28 H 0.05 0.62 6.16 -2.39 -0.01 0.61 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.42 1.86 8.83 -92.71 -0.82 1.04 16 32 H 0.10 2.26 7.40 -2.39 -0.02 2.24 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.11 1.76 8.11 -2.39 -0.02 1.74 16 38 H 0.02 0.71 6.11 -2.39 -0.01 0.69 16 39 H 0.07 2.27 7.06 -2.39 -0.02 2.25 16 40 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.11 4.36 8.00 -2.39 -0.02 4.34 16 42 H 0.10 4.14 7.66 -2.39 -0.02 4.13 16 43 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 44 H 0.09 2.15 6.02 -2.39 -0.01 2.13 16 45 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 46 H 0.04 1.20 5.80 -2.39 -0.01 1.18 16 47 H 0.12 1.82 5.74 -2.39 -0.01 1.81 16 Total: -1.00 -87.81 386.57 -1.52 -89.32 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.17 Total: 18.50 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 6.29 Total: 4.72 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -8.75 Total: -102.82 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.08 Total: -46.47 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.16 Total: -10.15 kcal Total: -87.81 -1.52 -89.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041791443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.904 kcal (2) G-P(sol) polarization free energy of solvation -87.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds