Wall clock time and date at job start Wed Apr 1 2020 00:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47202 * 2 1 4 4 C 1.53001 * 109.47335 * 119.99848 * 2 1 3 5 5 N 1.46497 * 109.47106 * 174.99954 * 4 2 1 6 6 S 1.65601 * 119.99903 * 165.00190 * 5 4 2 7 7 O 1.42102 * 106.40167 * 178.54230 * 6 5 4 8 8 O 1.42096 * 106.40506 * 311.45883 * 6 5 4 9 9 N 1.65601 * 107.21936 * 65.00369 * 6 5 4 10 10 C 1.46501 * 119.99748 * 270.00041 * 9 6 5 11 11 C 1.46498 * 119.99866 * 89.99626 * 9 6 5 12 12 C 1.50706 * 109.47041 * 95.00419 * 11 9 6 13 13 H 1.08001 * 119.99929 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00045 * 179.97438 * 12 11 9 15 15 N 1.31513 * 119.99959 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99799 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47141 * 90.00219 * 16 14 12 18 18 H 1.48501 * 109.46882 * 210.00347 * 16 14 12 19 19 H 1.48500 * 109.47260 * 329.99951 * 16 14 12 20 20 N 1.46503 * 109.47393 * 240.00334 * 2 1 3 21 21 C 1.46498 * 119.99555 * 304.49923 * 20 2 1 22 22 C 1.39670 * 119.99876 * 124.49587 * 20 2 1 23 23 C 1.38906 * 120.08054 * 354.12639 * 22 20 2 24 24 C 1.38098 * 119.92885 * 180.27597 * 23 22 20 25 25 C 1.38289 * 120.07651 * 359.51913 * 24 23 22 26 26 C 1.38291 * 120.14623 * 0.46339 * 25 24 23 27 27 C 1.38102 * 120.07224 * 359.78868 * 26 25 24 28 28 H 1.08997 * 109.46522 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47150 * 299.99682 * 1 2 3 30 30 H 1.08992 * 109.47225 * 59.99699 * 1 2 3 31 31 H 1.08993 * 109.47279 * 295.00407 * 4 2 1 32 32 H 1.08998 * 109.46724 * 55.00136 * 4 2 1 33 33 H 0.97000 * 120.00634 * 345.00781 * 5 4 2 34 34 H 1.08994 * 109.46859 * 89.99757 * 10 9 6 35 35 H 1.09001 * 109.46902 * 209.99633 * 10 9 6 36 36 H 1.09003 * 109.46960 * 329.99896 * 10 9 6 37 37 H 1.08997 * 109.47030 * 215.00038 * 11 9 6 38 38 H 1.09001 * 109.47558 * 335.00155 * 11 9 6 39 39 H 0.97007 * 119.99739 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.46683 * 269.99249 * 21 20 2 41 41 H 1.08992 * 109.47478 * 29.99375 * 21 20 2 42 42 H 1.08998 * 109.47265 * 149.99956 * 21 20 2 43 43 H 1.07999 * 120.03422 * 0.02562 * 23 22 20 44 44 H 1.08005 * 119.96513 * 179.72969 * 24 23 22 45 45 H 1.07989 * 119.93113 * 180.21243 * 25 24 23 46 46 H 1.07995 * 119.96579 * 179.76664 * 26 25 24 47 47 H 1.08005 * 120.03640 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1905 6 16 4.3574 -1.2176 2.5522 7 8 5.7233 -1.2731 2.1642 8 8 3.8772 -0.3696 3.5863 9 7 3.9285 -2.7602 2.9752 10 6 2.8016 -2.9839 3.8842 11 6 4.6759 -3.9010 2.4404 12 6 5.7396 -4.3113 3.4260 13 1 5.8482 -3.7755 4.3575 14 6 6.5740 -5.3706 3.1387 15 7 6.4413 -6.0233 2.0047 16 14 7.8928 -5.8787 4.3602 17 1 7.3385 -6.8909 5.2946 18 1 9.0473 -6.4597 3.6289 19 1 8.3411 -4.6893 5.1279 20 7 2.0184 -0.6905 -1.1962 21 6 1.5850 -2.0611 -1.4789 22 6 2.8970 -0.0421 -2.0670 23 6 3.2134 1.2957 -1.8683 24 6 4.0781 1.9353 -2.7345 25 6 4.6367 1.2427 -3.7932 26 6 4.3242 -0.0894 -3.9938 27 6 3.4561 -0.7336 -3.1343 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -0.1583 2.1369 32 1 1.6054 -1.7197 1.2951 33 1 3.9646 -0.6667 0.3541 34 1 1.8826 -3.0818 3.3063 35 1 2.9709 -3.8969 4.4549 36 1 2.7128 -2.1393 4.5676 37 1 3.9947 -4.7352 2.2727 38 1 5.1439 -3.6189 1.4972 39 1 7.0287 -6.7684 1.8024 40 1 2.2762 -2.7639 -1.0136 41 1 0.5839 -2.2159 -1.0769 42 1 1.5728 -2.2233 -2.5567 43 1 2.7805 1.8362 -1.0395 44 1 4.3211 2.9767 -2.5831 45 1 5.3152 1.7442 -4.4671 46 1 4.7591 -0.6265 -4.8237 47 1 3.2121 -1.7739 -3.2918 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045745388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:54 Heat of formation + Delta-G solvation = -33.869824 kcal Electronic energy + Delta-G solvation = -28930.519953 eV Core-core repulsion = 25047.582854 eV Total energy + Delta-G solvation = -3882.937099 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -39.89596 -37.52628 -36.55916 -35.48213 -35.13167 -34.30587 -32.42655 -31.85571 -30.96274 -29.36358 -27.77532 -26.48573 -25.58639 -25.02585 -22.85175 -22.27932 -21.76795 -20.02203 -18.83011 -18.04574 -17.27536 -16.72798 -16.49857 -16.06870 -15.81048 -15.51717 -15.07406 -14.62249 -14.47216 -14.23137 -13.97299 -13.60787 -13.52543 -13.32527 -13.28878 -13.10508 -12.61183 -12.38399 -12.33697 -12.26074 -12.16084 -12.07366 -11.61074 -11.44296 -11.41692 -11.29376 -11.15356 -11.06339 -11.04837 -10.72672 -10.68129 -10.50613 -10.02415 -9.92282 -9.76150 -9.27933 -8.92284 -8.44099 -8.06403 -7.33127 -6.05947 -4.09826 1.26373 1.44207 1.60476 2.95306 3.31845 3.38353 3.44375 3.56491 3.89389 4.16207 4.45190 4.46283 4.69480 4.83929 4.88865 5.01689 5.08775 5.12620 5.20376 5.29415 5.33594 5.38791 5.39901 5.46354 5.47379 5.60818 5.62804 5.67514 5.75584 5.78162 5.87377 5.95835 6.01138 6.09635 6.25761 6.30492 6.49823 6.55617 6.64425 6.84769 7.12450 7.19322 7.28092 7.43471 7.45312 7.62541 7.91649 8.21110 8.92486 9.55426 11.02664 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.003627 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.138721 B = 7718.934245 C = 8551.633784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.098 0.902 4 C 0.109 3.891 5 N -1.129 6.129 6 S 2.782 3.218 7 O -0.964 6.964 8 O -1.000 7.000 9 N -0.996 5.996 10 C 0.095 3.905 11 C 0.259 3.741 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.896 5.896 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.272 1.272 20 N -0.623 5.623 21 C 0.088 3.912 22 C 0.217 3.783 23 C -0.202 4.202 24 C -0.073 4.073 25 C -0.182 4.182 26 C -0.072 4.072 27 C -0.195 4.195 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.413 0.587 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.037 0.963 39 H 0.263 0.737 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.115 0.885 46 H 0.119 0.881 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.119 11.918 -9.824 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 H 0.116 0.884 4 C -0.020 4.020 5 N -0.889 5.889 6 S 2.789 3.211 7 O -0.947 6.947 8 O -0.984 6.984 9 N -0.839 5.839 10 C -0.052 4.052 11 C 0.137 3.863 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.535 5.535 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.197 1.197 20 N -0.334 5.334 21 C -0.054 4.054 22 C 0.115 3.885 23 C -0.224 4.224 24 C -0.092 4.092 25 C -0.202 4.202 26 C -0.091 4.091 27 C -0.217 4.217 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.246 0.754 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.133 0.867 46 H 0.137 0.863 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.654 12.178 -9.171 20.466 hybrid contribution 0.715 -0.741 0.053 1.031 sum -12.940 11.438 -9.118 19.529 Atomic orbital electron populations 1.22134 0.94323 1.02903 1.02775 1.21282 0.94271 0.97291 0.83843 0.88375 1.21619 0.80750 1.00929 0.98665 1.56140 1.15458 1.87714 1.29545 1.01911 0.73118 0.73081 0.72954 1.93645 1.31511 1.86664 1.82920 1.93511 1.82548 1.66171 1.56134 1.57596 1.43188 1.24587 1.58518 1.21354 0.87359 1.03247 0.93200 1.19019 0.90336 0.82627 0.94290 1.21503 1.16020 1.14925 1.04428 0.92201 1.24924 0.97368 0.96135 0.95544 1.69920 1.39156 1.21524 1.22896 0.86515 0.81296 0.78738 0.81040 1.20619 1.21032 1.19688 1.46456 1.49001 1.14334 1.23616 1.21661 1.00018 0.82452 1.01313 1.17854 0.89516 0.91371 0.89734 1.20725 1.05027 0.93516 1.03162 1.20873 0.95168 0.99267 0.93887 1.20891 1.03902 0.95143 1.00275 1.20902 0.95739 0.94506 0.97934 1.20723 1.02983 1.00324 0.97667 0.91765 0.91040 0.91780 0.89826 0.91742 0.75352 0.94489 0.90419 0.91617 0.94842 0.94532 0.92713 0.92646 0.91332 0.91519 0.86057 0.86398 0.86697 0.86334 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.08 37.16 0.34 -0.82 16 2 C 0.14 1.32 2.81 -67.93 -0.19 1.13 16 3 H 0.10 0.92 5.31 -51.92 -0.28 0.64 16 4 C 0.11 1.27 5.62 -4.04 -0.02 1.24 16 5 N -1.13 -17.27 5.97 -10.62 -0.06 -17.34 16 6 S 2.78 56.03 6.10 -107.50 -0.66 55.37 16 7 O -0.96 -23.84 17.11 -57.17 -0.98 -24.82 16 8 O -1.00 -20.83 16.21 -57.17 -0.93 -21.76 16 9 N -1.00 -20.64 3.23 -123.05 -0.40 -21.03 16 10 C 0.10 1.60 10.68 59.85 0.64 2.24 16 11 C 0.26 6.53 5.08 -5.19 -0.03 6.50 16 12 C -0.53 -15.03 9.38 -34.44 -0.32 -15.36 16 13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 16 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 N -0.62 -6.54 2.30 -172.00 -0.40 -6.93 16 21 C 0.09 0.84 9.39 59.85 0.56 1.40 16 22 C 0.22 2.56 5.95 -83.79 -0.50 2.06 16 23 C -0.20 -2.30 9.31 -39.39 -0.37 -2.67 16 24 C -0.07 -0.80 10.04 -39.61 -0.40 -1.19 16 25 C -0.18 -1.98 10.04 -39.54 -0.40 -2.38 16 26 C -0.07 -0.80 10.04 -39.61 -0.40 -1.20 16 27 C -0.19 -2.29 9.16 -39.38 -0.36 -2.65 16 28 H 0.06 0.43 6.53 -51.93 -0.34 0.09 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 32 H 0.06 0.71 7.94 -51.93 -0.41 0.30 16 33 H 0.41 6.35 7.58 -34.47 -0.26 6.08 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.34 8.07 -51.93 -0.42 0.93 16 36 H 0.07 1.05 7.02 -51.93 -0.36 0.69 16 37 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 38 H 0.04 0.99 7.61 -51.93 -0.40 0.60 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.53 6.20 -51.93 -0.32 0.21 16 42 H 0.07 0.57 6.46 -51.93 -0.34 0.24 16 43 H 0.12 1.23 5.75 -52.49 -0.30 0.92 16 44 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 45 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.12 1.32 6.31 -52.48 -0.33 0.98 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -34.67 390.60 -10.44 -45.11 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.09 Total: 4.03 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.54 Total: -9.99 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -0.12 Total: -70.85 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -1.91 Total: -46.58 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 56.03 SS G_CDS: -0.66 Total: 55.37 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.67 -10.44 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045745388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.242 kcal (2) G-P(sol) polarization free energy of solvation -34.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds