Wall clock time and date at job start Wed Apr 1 2020 00:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.46834 * 2 1 4 4 C 1.52999 * 109.47276 * 240.00618 * 2 1 3 5 5 N 1.46496 * 109.47213 * 184.99469 * 4 2 1 6 6 S 1.65603 * 119.99634 * 163.75805 * 5 4 2 7 7 O 1.42098 * 106.39999 * 177.69408 * 6 5 4 8 8 O 1.42100 * 106.40442 * 310.61350 * 6 5 4 9 9 N 1.65601 * 107.22169 * 64.15615 * 6 5 4 10 10 C 1.46495 * 119.99634 * 274.42491 * 9 6 5 11 11 C 1.46492 * 120.00044 * 94.41636 * 9 6 5 12 12 C 1.50699 * 109.46941 * 95.69190 * 11 9 6 13 13 H 1.08006 * 119.99767 * 5.04835 * 12 11 9 14 14 C 1.37881 * 120.00223 * 185.04922 * 12 11 9 15 15 N 1.31516 * 120.00085 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99954 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46728 * 90.00197 * 16 14 12 18 18 H 1.48496 * 109.47099 * 210.00381 * 16 14 12 19 19 H 1.48497 * 109.47177 * 330.00658 * 16 14 12 20 20 N 1.46499 * 109.47484 * 120.00208 * 2 1 3 21 21 C 1.46496 * 119.99585 * 63.58942 * 20 2 1 22 22 C 1.39678 * 120.00032 * 243.59414 * 20 2 1 23 23 C 1.38910 * 120.07106 * 354.54682 * 22 20 2 24 24 C 1.38104 * 119.91963 * 180.02562 * 23 22 20 25 25 C 1.38291 * 120.07665 * 359.97438 * 24 23 22 26 26 C 1.38281 * 120.14690 * 0.28056 * 25 24 23 27 27 C 1.38106 * 120.07569 * 359.44485 * 26 25 24 28 28 H 1.09001 * 109.47254 * 59.99699 * 1 2 3 29 29 H 1.09002 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47058 * 299.99360 * 1 2 3 31 31 H 1.09001 * 109.46815 * 304.99624 * 4 2 1 32 32 H 1.09002 * 109.47192 * 64.99212 * 4 2 1 33 33 H 0.96997 * 120.00477 * 343.76170 * 5 4 2 34 34 H 1.08994 * 109.47501 * 89.99503 * 10 9 6 35 35 H 1.08999 * 109.47253 * 209.99799 * 10 9 6 36 36 H 1.08998 * 109.47398 * 329.99772 * 10 9 6 37 37 H 1.09000 * 109.47606 * 215.68798 * 11 9 6 38 38 H 1.09000 * 109.47271 * 335.69440 * 11 9 6 39 39 H 0.96999 * 120.00243 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.47682 * 269.99642 * 21 20 2 41 41 H 1.08995 * 109.47297 * 30.00495 * 21 20 2 42 42 H 1.09007 * 109.46983 * 150.00334 * 21 20 2 43 43 H 1.08000 * 120.04159 * 0.05054 * 23 22 20 44 44 H 1.08006 * 119.96270 * 180.02562 * 24 23 22 45 45 H 1.07997 * 119.92443 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.96004 * 179.69694 * 26 25 24 47 47 H 1.08002 * 120.03937 * 180.27630 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8261 -1.1907 6 16 4.2939 -1.8908 -2.1799 7 8 5.6811 -1.7171 -1.9254 8 8 3.6288 -3.1390 -2.0421 9 7 4.0389 -1.3948 -3.7392 10 6 2.8337 -1.8200 -4.4552 11 6 5.0185 -0.5307 -4.4024 12 6 5.9602 -1.3753 -5.2214 13 1 5.7926 -2.4385 -5.3114 14 6 7.0359 -0.7909 -5.8559 15 7 7.8574 -1.5280 -6.5710 16 14 7.3254 1.0480 -5.7008 17 1 8.1915 1.3152 -4.5243 18 1 7.9912 1.5496 -6.9297 19 1 6.0239 1.7409 -5.5249 20 7 2.0184 -0.6906 1.1961 21 6 1.7305 -2.1140 1.3888 22 6 2.7584 0.0081 2.1528 23 6 3.1290 1.3264 1.9195 24 6 3.8612 2.0141 2.8673 25 6 4.2249 1.3920 4.0476 26 6 3.8620 0.0781 4.2806 27 6 3.1251 -0.6137 3.3396 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.6055 -1.7197 -1.2952 32 1 1.7516 -0.1581 -2.1370 33 1 4.0018 -0.2721 -0.5725 34 1 2.0368 -1.0957 -4.2873 35 1 3.0482 -1.8835 -5.5220 36 1 2.5193 -2.7974 -4.0891 37 1 4.5003 0.1722 -5.0547 38 1 5.5845 0.0202 -3.6512 39 1 8.6144 -1.1169 -7.0171 40 1 0.7914 -2.2248 1.9310 41 1 1.6495 -2.6030 0.4181 42 1 2.5366 -2.5735 1.9610 43 1 2.8447 1.8130 0.9983 44 1 4.1493 3.0392 2.6869 45 1 4.7977 1.9320 4.7869 46 1 4.1519 -0.4063 5.2013 47 1 2.8382 -1.6384 3.5241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045745389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:57 Heat of formation + Delta-G solvation = -55.599234 kcal Electronic energy + Delta-G solvation = -28821.912912 eV Core-core repulsion = 24938.033555 eV Total energy + Delta-G solvation = -3883.879357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69523 -38.51376 -38.18993 -37.30604 -36.88998 -35.38930 -34.51667 -32.68164 -31.76224 -30.28471 -30.20621 -27.11220 -26.88620 -26.51827 -23.85968 -23.66834 -22.59656 -20.93168 -20.31870 -19.17923 -18.92808 -18.58359 -18.24323 -17.57383 -16.80530 -16.53654 -16.30249 -16.06988 -15.58222 -15.50345 -15.19403 -14.75708 -14.63152 -14.51404 -14.40796 -14.13591 -13.97979 -13.93766 -13.55969 -13.43906 -13.38216 -13.20131 -13.11982 -13.10529 -13.00049 -12.76171 -12.50809 -12.36675 -12.25899 -12.17469 -12.05376 -11.88283 -11.71716 -11.45196 -10.79564 -10.75061 -10.48846 -9.78390 -9.76926 -8.30740 -8.14470 -6.36936 -0.38614 0.59573 0.76661 1.35706 1.40908 1.48541 2.01843 2.19195 2.34758 2.62636 3.03900 3.05198 3.39097 3.67483 3.90227 3.99975 4.07050 4.18191 4.27920 4.33061 4.39460 4.49270 4.56576 4.66897 4.67578 4.69097 4.71699 4.74530 4.82914 4.87319 4.88939 4.96409 4.99332 5.07150 5.08419 5.23115 5.31738 5.37963 5.43634 5.47276 5.67817 5.70945 5.81241 6.04652 6.04932 6.29042 6.40423 6.63520 6.66336 7.26711 8.86797 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013589 B = 0.003510 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.065861 B = 7975.001445 C = 8839.555203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.106 0.894 4 C 0.096 3.904 5 N -1.111 6.111 6 S 2.797 3.203 7 O -1.017 7.017 8 O -1.009 7.009 9 N -0.998 5.998 10 C 0.085 3.915 11 C 0.236 3.764 12 C -0.548 4.548 13 H 0.028 0.972 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.944 3.056 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.225 1.225 20 N -0.624 5.624 21 C 0.087 3.913 22 C 0.206 3.794 23 C -0.215 4.215 24 C -0.080 4.080 25 C -0.195 4.195 26 C -0.082 4.082 27 C -0.216 4.216 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.418 0.582 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.033 0.967 39 H 0.268 0.732 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.156 8.993 18.612 28.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.124 0.876 4 C -0.030 4.030 5 N -0.875 5.875 6 S 2.805 3.195 7 O -1.001 7.001 8 O -0.993 6.993 9 N -0.840 5.840 10 C -0.061 4.061 11 C 0.111 3.889 12 C -0.588 4.588 13 H 0.046 0.954 14 C -0.191 4.191 15 N -0.588 5.588 16 Si 0.765 3.235 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.148 1.148 20 N -0.334 5.334 21 C -0.056 4.056 22 C 0.104 3.896 23 C -0.237 4.237 24 C -0.099 4.099 25 C -0.215 4.215 26 C -0.100 4.100 27 C -0.238 4.238 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.253 0.747 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.148 0.852 46 H 0.151 0.849 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.756 7.984 18.485 27.518 hybrid contribution 0.981 0.433 -0.171 1.086 sum -17.775 8.417 18.314 26.874 Atomic orbital electron populations 1.22087 0.92475 1.03244 1.03538 1.21407 0.95605 0.97153 0.82377 0.87578 1.22050 0.77991 1.02764 1.00244 1.55620 1.16302 1.60626 1.54903 1.01219 0.71811 0.73625 0.72853 1.93566 1.34221 1.86825 1.85456 1.93495 1.76998 1.42195 1.86566 1.57295 1.31302 1.65572 1.29807 1.21677 0.85273 1.00365 0.98740 1.19197 0.86928 0.89861 0.92938 1.21753 1.10904 0.95388 1.30717 0.95376 1.25962 0.94878 1.04202 0.94077 1.70070 1.16257 1.38520 1.33975 0.85786 0.80779 0.78833 0.78080 1.19810 1.20287 1.14783 1.46540 1.57299 1.09010 1.20569 1.21673 1.00975 0.80729 1.02229 1.18049 0.90796 0.91730 0.88976 1.20950 1.06445 0.94151 1.02137 1.21195 0.95466 1.00106 0.93131 1.21176 1.05272 0.95935 0.99130 1.21165 0.95587 0.94578 0.98704 1.20905 1.06811 1.01300 0.94821 0.89333 0.91843 0.91897 0.90225 0.88271 0.74727 0.89260 0.91405 0.91145 0.92297 0.94914 0.92315 0.91882 0.91440 0.92116 0.84832 0.84656 0.85190 0.84868 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.25 71.98 0.67 -0.90 16 2 C 0.14 2.02 2.72 44.99 0.12 2.15 16 3 H 0.11 1.39 5.31 -2.38 -0.01 1.38 16 4 C 0.10 1.71 5.41 86.38 0.47 2.18 16 5 N -1.11 -28.73 5.79 -187.50 -1.09 -29.81 16 6 S 2.80 106.75 6.10 -56.49 -0.34 106.41 16 7 O -1.02 -49.52 16.95 -128.00 -2.17 -51.69 16 8 O -1.01 -40.77 16.31 -128.00 -2.09 -42.86 16 9 N -1.00 -38.40 3.23 -543.27 -1.75 -40.15 16 10 C 0.08 2.53 10.70 127.77 1.37 3.90 16 11 C 0.24 10.72 4.17 85.63 0.36 11.08 16 12 C -0.55 -32.07 9.93 25.60 0.25 -31.81 16 13 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 14 C 0.01 0.39 5.47 84.66 0.46 0.86 16 15 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 16 Si 0.94 43.01 27.37 68.60 1.88 44.89 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.23 -8.77 6.69 99.48 0.67 -8.10 16 20 N -0.62 -11.23 2.57 -698.08 -1.79 -13.03 16 21 C 0.09 1.52 9.26 127.77 1.18 2.70 16 22 C 0.21 4.24 6.54 38.21 0.25 4.49 16 23 C -0.21 -4.14 9.31 22.40 0.21 -3.93 16 24 C -0.08 -1.49 10.04 22.25 0.22 -1.26 16 25 C -0.20 -3.62 10.04 22.29 0.22 -3.40 16 26 C -0.08 -1.56 10.04 22.25 0.22 -1.33 16 27 C -0.22 -4.43 9.16 22.40 0.21 -4.22 16 28 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.65 7.76 -2.39 -0.02 0.63 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 1.46 6.40 -2.39 -0.02 1.45 16 32 H 0.10 1.32 8.00 -2.39 -0.02 1.30 16 33 H 0.42 10.44 8.60 -96.75 -0.83 9.61 16 34 H 0.09 1.79 8.00 -2.39 -0.02 1.77 16 35 H 0.07 2.20 8.07 -2.39 -0.02 2.19 16 36 H 0.07 2.06 7.06 -2.39 -0.02 2.05 16 37 H 0.06 2.38 7.52 -2.39 -0.02 2.37 16 38 H 0.03 1.49 6.61 -2.39 -0.02 1.48 16 39 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.26 6.35 -2.39 -0.02 1.25 16 42 H 0.06 1.13 6.44 -2.38 -0.02 1.11 16 43 H 0.13 2.14 5.74 -2.91 -0.02 2.12 16 44 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 46 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 47 H 0.13 2.31 6.30 -2.91 -0.02 2.29 16 Total: -1.00 -80.87 388.36 -0.74 -81.60 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.10 Total: 24.32 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 6.21 Total: -19.51 kcal Atomic # 7 Polarization: -138.83 SS G_CDS: -4.33 Total: -143.17 kcal Atomic # 8 Polarization: -90.29 SS G_CDS: -4.26 Total: -94.55 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.89 kcal Atomic # 16 Polarization: 106.75 SS G_CDS: -0.34 Total: 106.41 kcal Total: -80.87 -0.74 -81.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045745389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.005 kcal (2) G-P(sol) polarization free energy of solvation -80.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds