Wall clock time and date at job start Wed Apr 1 2020 01:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47486 * 2 1 4 4 C 1.37102 * 119.99819 * 92.95516 * 3 2 1 5 5 H 1.07996 * 120.00320 * 320.67698 * 4 3 2 6 6 C 1.38953 * 119.99751 * 140.67414 * 4 3 2 7 7 N 1.31412 * 120.00002 * 158.06349 * 6 4 3 8 8 Si 1.86796 * 119.99976 * 338.06697 * 6 4 3 9 9 H 1.48503 * 109.47439 * 93.69473 * 8 6 4 10 10 H 1.48506 * 109.47326 * 333.69394 * 8 6 4 11 11 H 1.48502 * 109.47525 * 213.69320 * 8 6 4 12 12 C 1.34776 * 120.00095 * 272.96347 * 3 2 1 13 13 O 1.21298 * 119.99763 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99901 * 359.97438 * 12 3 2 15 15 C 1.53001 * 109.46930 * 180.02562 * 14 12 3 16 16 C 1.53000 * 109.47147 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47147 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.46779 * 180.02562 * 17 16 15 19 19 H 1.09000 * 110.70378 * 56.87630 * 18 17 16 20 20 S 1.84562 * 110.79206 * 293.54343 * 18 17 16 21 21 C 1.84857 * 96.96760 * 248.32836 * 20 18 17 22 22 C 1.52266 * 100.35752 * 24.35601 * 21 20 18 23 23 H 1.09000 * 110.06483 * 70.46475 * 22 21 20 24 24 N 1.44537 * 122.62678 * 201.83884 * 22 21 20 25 25 C 1.36683 * 105.44692 * 146.34735 * 24 22 21 26 26 O 1.21583 * 123.68124 * 165.60799 * 25 24 22 27 27 N 1.36858 * 112.63269 * 345.60038 * 25 24 22 28 28 C 1.43235 * 104.99412 * 346.46160 * 27 25 24 29 29 H 1.08994 * 106.51188 * 282.84957 * 28 27 25 30 30 H 1.08998 * 109.47095 * 63.76908 * 1 2 3 31 31 H 1.08994 * 109.47152 * 183.77121 * 1 2 3 32 32 H 1.09005 * 109.46724 * 303.77235 * 1 2 3 33 33 H 1.09000 * 109.47090 * 240.00171 * 2 1 3 34 34 H 1.08996 * 109.47372 * 120.00275 * 2 1 3 35 35 H 0.97003 * 119.99910 * 179.97438 * 7 6 4 36 36 H 1.08999 * 109.47201 * 299.99749 * 14 12 3 37 37 H 1.08993 * 109.47221 * 60.00374 * 14 12 3 38 38 H 1.09002 * 109.47407 * 300.00096 * 15 14 12 39 39 H 1.08999 * 109.47279 * 60.00023 * 15 14 12 40 40 H 1.09002 * 109.47198 * 300.00411 * 16 15 14 41 41 H 1.08999 * 109.46859 * 59.99953 * 16 15 14 42 42 H 1.08999 * 109.46955 * 300.00063 * 17 16 15 43 43 H 1.08999 * 109.47279 * 60.00210 * 17 16 15 44 44 H 1.09003 * 111.23427 * 142.13386 * 21 20 18 45 45 H 1.09007 * 111.23603 * 266.57432 * 21 20 18 46 46 H 0.96998 * 127.27522 * 326.34432 * 24 22 21 47 47 H 0.97002 * 127.49866 * 166.45893 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3046 2.0070 1.1858 5 1 1.6681 1.8539 2.0446 6 6 3.4139 2.8383 1.2825 7 7 3.4680 3.7550 2.2225 8 14 4.8281 2.6528 0.0763 9 1 4.6346 3.5877 -1.0611 10 1 4.8664 1.2575 -0.4308 11 1 6.1078 2.9655 0.7618 12 6 2.1862 2.0367 -1.1656 13 8 2.5901 3.1804 -1.1655 14 6 1.8719 1.3486 -2.4690 15 6 2.1472 2.3058 -3.6304 16 6 1.8288 1.6071 -4.9537 17 6 2.1035 2.5646 -6.1150 18 6 1.7844 1.8659 -7.4383 19 1 0.7527 1.5142 -7.4494 20 16 2.9552 0.4720 -7.7422 21 6 3.8374 1.2294 -9.1793 22 6 3.5829 2.7062 -8.9093 23 1 4.1547 3.0314 -8.0402 24 7 3.6549 3.7115 -9.9453 25 6 2.7109 4.6431 -9.6148 26 8 2.6542 5.7512 -10.1118 27 7 1.8365 4.1922 -8.6634 28 6 2.0536 2.7778 -8.6011 29 1 1.5549 2.3492 -9.4703 30 1 -0.3633 0.4542 -0.9218 31 1 -0.3633 -1.0254 0.0676 32 1 -0.3633 0.5713 0.8543 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 4.2425 4.3351 2.2902 36 1 2.4985 0.4627 -2.5725 37 1 0.8224 1.0548 -2.4809 38 1 1.5210 3.1920 -3.5271 39 1 3.1969 2.5994 -3.6183 40 1 2.4553 0.7211 -5.0567 41 1 0.7792 1.3133 -4.9660 42 1 1.4766 3.4502 -6.0117 43 1 3.1529 2.8588 -6.1029 44 1 4.9030 1.0012 -9.1533 45 1 3.3922 0.9183 -10.1244 46 1 4.2478 3.7226 -10.7129 47 1 1.2067 4.7165 -8.1443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068232146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:17 Heat of formation + Delta-G solvation = -33.279057 kcal Electronic energy + Delta-G solvation = -27775.958919 eV Core-core repulsion = 23893.047438 eV Total energy + Delta-G solvation = -3882.911481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02486 -39.00801 -37.88249 -36.00390 -34.86268 -33.80548 -33.15165 -32.23375 -30.89489 -29.61435 -28.18746 -25.43792 -24.04625 -23.21348 -22.38668 -22.28042 -21.09993 -21.01741 -19.02384 -18.16707 -17.67813 -17.10569 -17.05131 -16.27900 -15.87399 -15.71353 -15.45711 -15.03455 -14.94428 -14.60406 -14.36038 -14.09615 -13.75568 -13.34210 -13.14377 -13.10563 -12.80908 -12.62760 -12.43212 -12.29091 -12.10559 -11.95122 -11.85409 -11.41191 -11.16412 -10.94051 -10.90120 -10.87660 -10.74264 -10.62620 -10.46139 -10.28917 -9.94296 -9.88718 -9.88058 -9.29773 -8.44855 -8.38889 -8.22241 -7.55218 -6.14519 -3.86853 1.04281 1.50021 2.36428 2.41987 3.18344 3.35577 3.50666 3.57435 3.71066 3.92435 3.94181 4.14206 4.26993 4.37993 4.53947 4.63889 4.72609 4.84264 4.91229 5.03822 5.10701 5.14911 5.21712 5.26941 5.38847 5.51913 5.54122 5.64593 5.72306 5.82938 5.93303 5.97049 6.01753 6.07909 6.17772 6.29391 6.45875 6.48610 6.52590 6.65569 6.66037 6.73403 6.80755 7.90757 8.02122 8.04720 8.84875 9.00339 9.50313 9.90882 10.90841 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.002553 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.131917 B =10965.551205 C =11659.128562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 N -0.464 5.464 4 C -0.354 4.354 5 H 0.091 0.909 6 C 0.092 3.908 7 N -0.867 5.867 8 Si 0.914 3.086 9 H -0.251 1.251 10 H -0.284 1.284 11 H -0.312 1.312 12 C 0.440 3.560 13 O -0.547 6.547 14 C -0.134 4.134 15 C -0.100 4.100 16 C -0.119 4.119 17 C -0.106 4.106 18 C -0.032 4.032 19 H 0.120 0.880 20 S -0.235 6.235 21 C -0.076 4.076 22 C 0.098 3.902 23 H 0.098 0.902 24 N -0.733 5.733 25 C 0.712 3.288 26 O -0.557 6.557 27 N -0.723 5.723 28 C 0.105 3.895 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.271 0.729 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.116 0.884 45 H 0.102 0.898 46 H 0.431 0.569 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 -9.349 -24.702 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.186 5.186 4 C -0.480 4.480 5 H 0.109 0.891 6 C -0.117 4.117 7 N -0.502 5.502 8 Si 0.746 3.254 9 H -0.177 1.177 10 H -0.210 1.210 11 H -0.242 1.242 12 C 0.230 3.770 13 O -0.430 6.430 14 C -0.174 4.174 15 C -0.138 4.138 16 C -0.157 4.157 17 C -0.145 4.145 18 C -0.161 4.161 19 H 0.138 0.862 20 S -0.009 6.009 21 C -0.225 4.225 22 C -0.011 4.011 23 H 0.115 0.885 24 N -0.399 5.399 25 C 0.412 3.588 26 O -0.431 6.431 27 N -0.389 5.389 28 C -0.005 4.005 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.134 0.866 45 H 0.121 0.879 46 H 0.274 0.726 47 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -2.367 -9.108 -24.310 26.068 hybrid contribution 0.499 0.898 -0.998 1.433 sum -1.869 -8.209 -25.309 26.672 Atomic orbital electron populations 1.22158 0.97105 1.00748 1.02235 1.21534 0.93810 0.85536 1.01533 1.43719 1.59139 1.10023 1.05766 1.18776 1.11462 1.28481 0.89251 0.89113 1.25279 0.97892 0.93159 0.95380 1.69787 1.29687 1.16183 1.34540 0.86385 0.78377 0.78655 0.82027 1.17682 1.20997 1.24168 1.20375 0.83789 0.87381 0.85447 1.90524 1.47844 1.18282 1.86351 1.21628 1.02290 0.99362 0.94129 1.21273 1.02768 0.98184 0.91596 1.21656 1.01620 0.98553 0.93855 1.21717 1.02966 0.98500 0.91339 1.23214 1.01611 0.94298 0.97008 0.86217 1.88479 1.43883 1.27789 1.40702 1.23870 1.04692 0.94069 0.99870 1.22552 0.96759 0.89704 0.92076 0.88474 1.45132 1.40925 1.24501 1.29360 1.17219 0.79076 0.83349 0.79120 1.90992 1.75153 1.19607 1.57301 1.44801 1.42559 1.07080 1.44425 1.21493 0.95671 0.84482 0.98833 0.90916 0.93174 0.92830 0.92078 0.92545 0.90731 0.91943 0.90640 0.90218 0.91309 0.91556 0.91168 0.91971 0.90570 0.90660 0.86551 0.87938 0.72566 0.72277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.20 37.16 0.38 -2.13 16 2 C 0.10 1.80 5.87 -4.04 -0.02 1.78 16 3 N -0.46 -11.09 2.22 -114.81 -0.25 -11.35 16 4 C -0.35 -10.08 9.72 -14.93 -0.15 -10.23 16 5 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 6 C 0.09 2.75 4.79 -17.47 -0.08 2.66 16 7 N -0.87 -26.99 13.96 55.50 0.77 -26.21 16 8 Si 0.91 24.67 24.84 -169.99 -4.22 20.45 16 9 H -0.25 -7.03 6.14 56.52 0.35 -6.68 16 10 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.31 -8.28 7.11 56.52 0.40 -7.88 16 12 C 0.44 10.29 5.92 -10.99 -0.06 10.22 16 13 O -0.55 -15.06 11.10 5.54 0.06 -15.00 16 14 C -0.13 -2.24 4.29 -27.88 -0.12 -2.36 16 15 C -0.10 -1.50 4.50 -26.73 -0.12 -1.62 16 16 C -0.12 -1.23 5.07 -26.73 -0.14 -1.37 16 17 C -0.11 -0.90 4.64 -26.73 -0.12 -1.02 16 18 C -0.03 -0.21 3.23 -28.12 -0.09 -0.30 16 19 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 20 S -0.24 -1.73 21.81 -107.50 -2.34 -4.07 16 21 C -0.08 -0.36 7.24 36.78 0.27 -0.10 16 22 C 0.10 0.60 3.53 -67.65 -0.24 0.36 16 23 H 0.10 0.71 7.37 -51.93 -0.38 0.33 16 24 N -0.73 -5.02 6.56 -57.50 -0.38 -5.40 16 25 C 0.71 7.22 8.80 -83.28 -0.73 6.48 16 26 O -0.56 -8.06 18.05 5.29 0.10 -7.96 16 27 N -0.72 -5.56 6.43 -59.30 -0.38 -5.94 16 28 C 0.10 0.66 2.71 -69.35 -0.19 0.48 16 29 H 0.07 0.45 7.99 -51.93 -0.42 0.03 16 30 H 0.05 0.73 6.83 -51.93 -0.35 0.37 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.87 6.56 -51.93 -0.34 0.53 16 34 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 35 H 0.27 7.95 8.31 -40.82 -0.34 7.61 16 36 H 0.08 1.15 7.40 -51.93 -0.38 0.77 16 37 H 0.08 1.16 6.77 -51.93 -0.35 0.80 16 38 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 40 H 0.07 0.74 7.31 -51.93 -0.38 0.36 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.71 7.36 -51.93 -0.38 0.33 16 44 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.43 2.12 8.96 -40.82 -0.37 1.75 16 47 H 0.43 2.89 8.96 -40.82 -0.37 2.52 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -37.13 378.94 -9.91 -47.04 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.55 Total: -0.12 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.42 Total: 2.85 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.24 Total: -48.90 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.16 Total: -22.96 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -4.22 Total: 20.45 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.34 Total: -4.07 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.13 -9.91 -47.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.760 kcal (2) G-P(sol) polarization free energy of solvation -37.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds