Wall clock time and date at job start Wed Apr 1 2020 01:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47486 * 2 1 4 4 C 1.37102 * 119.99819 * 92.95516 * 3 2 1 5 5 H 1.07996 * 120.00320 * 320.67698 * 4 3 2 6 6 C 1.38953 * 119.99751 * 140.67414 * 4 3 2 7 7 N 1.31412 * 120.00002 * 158.06349 * 6 4 3 8 8 Si 1.86796 * 119.99976 * 338.06697 * 6 4 3 9 9 H 1.48503 * 109.47439 * 93.69473 * 8 6 4 10 10 H 1.48506 * 109.47326 * 333.69394 * 8 6 4 11 11 H 1.48502 * 109.47525 * 213.69320 * 8 6 4 12 12 C 1.34776 * 120.00095 * 272.96347 * 3 2 1 13 13 O 1.21298 * 119.99763 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99901 * 359.97438 * 12 3 2 15 15 C 1.53001 * 109.46930 * 180.02562 * 14 12 3 16 16 C 1.53000 * 109.47147 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47147 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.46779 * 180.02562 * 17 16 15 19 19 H 1.09000 * 110.70378 * 56.87630 * 18 17 16 20 20 S 1.84562 * 110.79206 * 293.54343 * 18 17 16 21 21 C 1.84857 * 96.96760 * 248.32836 * 20 18 17 22 22 C 1.52266 * 100.35752 * 24.35601 * 21 20 18 23 23 H 1.09000 * 110.06483 * 70.46475 * 22 21 20 24 24 N 1.44537 * 122.62678 * 201.83884 * 22 21 20 25 25 C 1.36683 * 105.44692 * 146.34735 * 24 22 21 26 26 O 1.21583 * 123.68124 * 165.60799 * 25 24 22 27 27 N 1.36858 * 112.63269 * 345.60038 * 25 24 22 28 28 C 1.43235 * 104.99412 * 346.46160 * 27 25 24 29 29 H 1.08994 * 106.51188 * 282.84957 * 28 27 25 30 30 H 1.08998 * 109.47095 * 63.76908 * 1 2 3 31 31 H 1.08994 * 109.47152 * 183.77121 * 1 2 3 32 32 H 1.09005 * 109.46724 * 303.77235 * 1 2 3 33 33 H 1.09000 * 109.47090 * 240.00171 * 2 1 3 34 34 H 1.08996 * 109.47372 * 120.00275 * 2 1 3 35 35 H 0.97003 * 119.99910 * 179.97438 * 7 6 4 36 36 H 1.08999 * 109.47201 * 299.99749 * 14 12 3 37 37 H 1.08993 * 109.47221 * 60.00374 * 14 12 3 38 38 H 1.09002 * 109.47407 * 300.00096 * 15 14 12 39 39 H 1.08999 * 109.47279 * 60.00023 * 15 14 12 40 40 H 1.09002 * 109.47198 * 300.00411 * 16 15 14 41 41 H 1.08999 * 109.46859 * 59.99953 * 16 15 14 42 42 H 1.08999 * 109.46955 * 300.00063 * 17 16 15 43 43 H 1.08999 * 109.47279 * 60.00210 * 17 16 15 44 44 H 1.09003 * 111.23427 * 142.13386 * 21 20 18 45 45 H 1.09007 * 111.23603 * 266.57432 * 21 20 18 46 46 H 0.96998 * 127.27522 * 326.34432 * 24 22 21 47 47 H 0.97002 * 127.49866 * 166.45893 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3046 2.0070 1.1858 5 1 1.6681 1.8539 2.0446 6 6 3.4139 2.8383 1.2825 7 7 3.4680 3.7550 2.2225 8 14 4.8281 2.6528 0.0763 9 1 4.6346 3.5877 -1.0611 10 1 4.8664 1.2575 -0.4308 11 1 6.1078 2.9655 0.7618 12 6 2.1862 2.0367 -1.1656 13 8 2.5901 3.1804 -1.1655 14 6 1.8719 1.3486 -2.4690 15 6 2.1472 2.3058 -3.6304 16 6 1.8288 1.6071 -4.9537 17 6 2.1035 2.5646 -6.1150 18 6 1.7844 1.8659 -7.4383 19 1 0.7527 1.5142 -7.4494 20 16 2.9552 0.4720 -7.7422 21 6 3.8374 1.2294 -9.1793 22 6 3.5829 2.7062 -8.9093 23 1 4.1547 3.0314 -8.0402 24 7 3.6549 3.7115 -9.9453 25 6 2.7109 4.6431 -9.6148 26 8 2.6542 5.7512 -10.1118 27 7 1.8365 4.1922 -8.6634 28 6 2.0536 2.7778 -8.6011 29 1 1.5549 2.3492 -9.4703 30 1 -0.3633 0.4542 -0.9218 31 1 -0.3633 -1.0254 0.0676 32 1 -0.3633 0.5713 0.8543 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 4.2425 4.3351 2.2902 36 1 2.4985 0.4627 -2.5725 37 1 0.8224 1.0548 -2.4809 38 1 1.5210 3.1920 -3.5271 39 1 3.1969 2.5994 -3.6183 40 1 2.4553 0.7211 -5.0567 41 1 0.7792 1.3133 -4.9660 42 1 1.4766 3.4502 -6.0117 43 1 3.1529 2.8588 -6.1029 44 1 4.9030 1.0012 -9.1533 45 1 3.3922 0.9183 -10.1244 46 1 4.2478 3.7226 -10.7129 47 1 1.2067 4.7165 -8.1443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068232146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:16 Heat of formation + Delta-G solvation = -61.962360 kcal Electronic energy + Delta-G solvation = -27777.202721 eV Core-core repulsion = 23893.047438 eV Total energy + Delta-G solvation = -3884.155283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.65039 -40.81128 -38.68080 -37.04669 -36.53150 -34.68611 -34.31076 -33.78392 -31.77104 -31.19806 -29.11388 -26.89185 -25.27229 -24.15326 -23.56856 -22.99674 -22.16599 -21.69199 -20.83053 -19.01614 -18.72764 -18.32827 -17.71440 -17.61428 -17.05588 -16.84226 -16.56242 -16.28516 -15.91580 -15.51558 -15.47158 -15.18183 -14.91294 -14.81140 -14.58852 -14.22301 -14.11696 -13.90259 -13.74054 -13.36868 -13.16742 -12.95748 -12.84434 -12.60365 -12.53763 -12.16304 -12.14086 -11.98716 -11.91582 -11.83657 -11.76151 -11.69364 -11.46427 -11.03114 -10.68556 -10.61212 -10.29537 -9.86049 -9.54584 -8.74790 -8.41391 -6.11643 0.55696 1.00999 1.22703 1.35243 1.51963 1.64326 1.79599 2.04274 2.48305 2.64561 2.75305 3.07035 3.14259 3.42857 3.56690 3.75705 3.90717 3.99423 4.07005 4.16270 4.24147 4.25069 4.36587 4.45491 4.53300 4.58189 4.61006 4.66068 4.74028 4.75532 4.80335 4.85988 4.99976 5.00837 5.08455 5.13351 5.24202 5.42946 5.46861 5.54665 5.73715 5.85464 5.86559 5.98310 6.30069 6.80990 6.96728 7.36475 7.41233 7.96937 8.67594 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.002553 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.131917 B =10965.551205 C =11659.128562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.092 3.908 3 N -0.481 5.481 4 C -0.349 4.349 5 H 0.063 0.937 6 C 0.040 3.960 7 N -0.914 5.914 8 Si 0.968 3.032 9 H -0.272 1.272 10 H -0.263 1.263 11 H -0.310 1.310 12 C 0.432 3.568 13 O -0.596 6.596 14 C -0.124 4.124 15 C -0.097 4.097 16 C -0.106 4.106 17 C -0.105 4.105 18 C -0.018 4.018 19 H 0.137 0.863 20 S -0.268 6.268 21 C -0.060 4.060 22 C 0.101 3.899 23 H 0.086 0.914 24 N -0.719 5.719 25 C 0.705 3.295 26 O -0.608 6.608 27 N -0.718 5.718 28 C 0.106 3.894 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.031 0.969 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.271 0.729 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.051 0.949 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.130 0.870 45 H 0.121 0.879 46 H 0.440 0.560 47 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 -12.613 -27.575 30.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.030 4.030 3 N -0.204 5.204 4 C -0.476 4.476 5 H 0.081 0.919 6 C -0.164 4.164 7 N -0.552 5.552 8 Si 0.798 3.202 9 H -0.200 1.200 10 H -0.187 1.187 11 H -0.240 1.240 12 C 0.224 3.776 13 O -0.482 6.482 14 C -0.163 4.163 15 C -0.135 4.135 16 C -0.143 4.143 17 C -0.144 4.144 18 C -0.147 4.147 19 H 0.155 0.845 20 S -0.041 6.041 21 C -0.208 4.208 22 C -0.008 4.008 23 H 0.104 0.896 24 N -0.385 5.385 25 C 0.405 3.595 26 O -0.485 6.485 27 N -0.382 5.382 28 C -0.003 4.003 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.148 0.852 45 H 0.139 0.861 46 H 0.285 0.715 47 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -3.097 -12.472 -27.176 30.061 hybrid contribution 0.628 1.878 -0.091 1.982 sum -2.469 -10.594 -27.267 29.357 Atomic orbital electron populations 1.22089 0.94885 1.02943 1.01499 1.21851 0.95569 0.82290 1.03311 1.44011 1.59467 1.12440 1.04462 1.18728 1.10257 1.28260 0.90359 0.91884 1.25988 1.00258 0.93339 0.96813 1.69880 1.30602 1.17913 1.36845 0.85498 0.76170 0.79044 0.79522 1.19951 1.18712 1.24031 1.21643 0.81571 0.87056 0.87335 1.90493 1.49582 1.20771 1.87318 1.21686 1.04717 0.99705 0.90217 1.21243 1.00791 0.97851 0.93653 1.21532 1.02928 0.98329 0.91527 1.21657 1.02320 0.98519 0.91953 1.23107 1.02285 0.93717 0.95564 0.84480 1.88609 1.44627 1.28397 1.42466 1.23893 1.05365 0.92185 0.99367 1.22561 0.96514 0.90369 0.91351 0.89627 1.45040 1.40042 1.23890 1.29557 1.17507 0.79731 0.83080 0.79172 1.90955 1.76542 1.21824 1.59220 1.44783 1.41949 1.07826 1.43685 1.21555 0.95908 0.83558 0.99290 0.89752 0.92063 0.88810 0.95000 0.88672 0.91074 0.92029 0.87997 0.86933 0.93004 0.94239 0.90717 0.89857 0.90336 0.91954 0.85226 0.86107 0.71496 0.71865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 10.20 71.98 0.73 -3.52 16 2 C 0.09 3.04 5.87 86.38 0.51 3.55 16 3 N -0.48 -22.47 2.22 -635.54 -1.41 -23.88 16 4 C -0.35 -20.27 9.72 84.04 0.82 -19.46 16 5 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 6 C 0.04 2.43 4.79 84.93 0.41 2.84 16 7 N -0.91 -59.22 13.96 21.66 0.30 -58.92 16 8 Si 0.97 51.97 24.84 68.60 1.70 53.67 16 9 H -0.27 -15.47 6.14 99.48 0.61 -14.86 16 10 H -0.26 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.31 -16.30 7.11 99.48 0.71 -15.59 16 12 C 0.43 19.63 5.92 87.66 0.52 20.15 16 13 O -0.60 -33.14 11.10 -3.09 -0.03 -33.17 16 14 C -0.12 -3.70 4.29 29.85 0.13 -3.57 16 15 C -0.10 -2.71 4.50 30.59 0.14 -2.58 16 16 C -0.11 -1.83 5.07 30.59 0.16 -1.67 16 17 C -0.11 -1.53 4.64 30.59 0.14 -1.39 16 18 C -0.02 -0.18 3.23 29.69 0.10 -0.08 16 19 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 20 S -0.27 -3.07 21.81 -56.49 -1.23 -4.31 16 21 C -0.06 -0.37 7.24 71.74 0.52 0.15 16 22 C 0.10 0.99 3.53 46.22 0.16 1.15 16 23 H 0.09 1.10 7.37 -2.39 -0.02 1.08 16 24 N -0.72 -8.66 6.56 -453.00 -2.97 -11.63 16 25 C 0.70 13.72 8.80 177.78 1.56 15.29 16 26 O -0.61 -17.74 18.05 -3.98 -0.07 -17.81 16 27 N -0.72 -10.03 6.43 -458.58 -2.95 -12.98 16 28 C 0.11 1.07 2.71 45.79 0.12 1.19 16 29 H 0.08 0.74 7.99 -2.39 -0.02 0.72 16 30 H 0.06 1.52 6.83 -2.39 -0.02 1.51 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.10 2.43 6.56 -2.39 -0.02 2.41 16 34 H 0.07 2.38 8.02 -2.39 -0.02 2.36 16 35 H 0.27 16.58 8.31 -92.71 -0.77 15.81 16 36 H 0.10 2.59 7.40 -2.39 -0.02 2.57 16 37 H 0.11 2.69 6.77 -2.39 -0.02 2.67 16 38 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 39 H 0.04 1.30 8.10 -2.39 -0.02 1.28 16 40 H 0.07 1.28 7.31 -2.39 -0.02 1.26 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 1.08 7.36 -2.39 -0.02 1.07 16 44 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 46 H 0.44 3.58 8.96 -92.71 -0.83 2.75 16 47 H 0.44 5.35 8.96 -92.71 -0.83 4.52 16 Total: -1.00 -85.85 378.94 -1.41 -87.26 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -0.76 Total: 9.70 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.01 Total: 12.05 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -7.02 Total: -107.40 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.11 Total: -50.98 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 1.70 Total: 53.67 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -1.23 Total: -4.31 kcal Total: -85.85 -1.41 -87.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.301 kcal (2) G-P(sol) polarization free energy of solvation -85.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds