Wall clock time and date at job start Wed Apr 1 2020 01:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47161 * 2 1 4 4 C 1.37101 * 120.00149 * 264.74423 * 3 2 1 5 5 H 1.07997 * 119.99779 * 146.16907 * 4 3 2 6 6 C 1.38950 * 119.99971 * 326.16926 * 4 3 2 7 7 N 1.31412 * 119.99888 * 337.68372 * 6 4 3 8 8 Si 1.86794 * 120.00224 * 157.68155 * 6 4 3 9 9 H 1.48503 * 109.47018 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47273 * 119.99694 * 8 6 4 11 11 H 1.48500 * 109.47473 * 240.00234 * 8 6 4 12 12 C 1.34774 * 119.99968 * 84.74677 * 3 2 1 13 13 O 1.21294 * 119.99939 * 179.97438 * 12 3 2 14 14 C 1.50702 * 120.00016 * 359.97438 * 12 3 2 15 15 C 1.53003 * 109.46930 * 180.02562 * 14 12 3 16 16 C 1.53000 * 109.46813 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47338 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47338 * 179.97438 * 17 16 15 19 19 H 1.09002 * 110.82175 * 51.64941 * 18 17 16 20 20 S 1.83905 * 110.76253 * 288.29260 * 18 17 16 21 21 C 1.83921 * 94.80406 * 207.00408 * 20 18 17 22 22 C 1.54136 * 102.71254 * 34.69098 * 21 20 18 23 23 H 1.08996 * 110.50758 * 99.02782 * 22 21 20 24 24 N 1.47129 * 109.21424 * 220.48763 * 22 21 20 25 25 C 1.33999 * 109.04476 * 120.18559 * 24 22 21 26 26 O 1.21580 * 123.05776 * 179.97438 * 25 24 22 27 27 N 1.33994 * 113.88278 * 359.97438 * 25 24 22 28 28 C 1.47130 * 109.04463 * 0.02562 * 27 25 24 29 29 H 1.09002 * 110.25957 * 118.21220 * 28 27 25 30 30 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47647 * 300.00232 * 1 2 3 32 32 H 1.09004 * 109.46962 * 60.00446 * 1 2 3 33 33 H 1.09005 * 109.47433 * 239.99529 * 2 1 3 34 34 H 1.09001 * 109.47038 * 120.00324 * 2 1 3 35 35 H 0.96998 * 120.00323 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.46959 * 60.00426 * 14 12 3 37 37 H 1.08997 * 109.46853 * 299.99967 * 14 12 3 38 38 H 1.08996 * 109.47294 * 60.00163 * 15 14 12 39 39 H 1.08997 * 109.47250 * 299.99631 * 15 14 12 40 40 H 1.09002 * 109.47520 * 60.00522 * 16 15 14 41 41 H 1.09005 * 109.47509 * 299.99985 * 16 15 14 42 42 H 1.08994 * 109.46717 * 59.99581 * 17 16 15 43 43 H 1.09005 * 109.46747 * 300.00376 * 17 16 15 44 44 H 1.08992 * 110.76240 * 276.38217 * 21 20 18 45 45 H 1.09001 * 110.76069 * 152.99677 * 21 20 18 46 46 H 0.96998 * 125.47472 * 300.15704 * 24 22 21 47 47 H 0.96996 * 125.47847 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9913 -1.1823 5 1 2.1816 3.0506 -1.3088 6 6 2.9007 1.2466 -2.2178 7 7 3.5051 0.1087 -1.9593 8 14 2.7827 1.8629 -3.9772 9 1 2.0594 3.1597 -4.0000 10 1 4.1487 2.0489 -4.5292 11 1 2.0467 0.8705 -4.8011 12 6 2.1422 2.0521 1.1623 13 8 2.5469 3.1956 1.1623 14 6 1.7778 1.3817 2.4619 15 6 2.0083 2.3548 3.6198 16 6 1.6390 1.6740 4.9393 17 6 1.8689 2.6472 6.0973 18 6 1.4990 1.9666 7.4167 19 1 2.0007 1.0033 7.5098 20 16 -0.3238 1.7688 7.5596 21 6 -0.3369 1.7859 9.3987 22 6 0.7967 2.7740 9.7368 23 1 0.3893 3.7589 9.9650 24 7 1.5607 2.2602 10.8843 25 6 2.8371 2.0844 10.5164 26 8 3.6937 1.6674 11.2718 27 7 3.0836 2.4098 9.2402 28 6 1.8364 2.8762 8.6142 29 1 1.9413 3.9114 8.2894 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8903 -0.4110 -2.6821 36 1 2.3992 0.4971 2.6010 37 1 0.7283 1.0886 2.4376 38 1 1.3867 3.2393 3.4805 39 1 3.0577 2.6484 3.6443 40 1 2.2610 0.7898 5.0785 41 1 0.5896 1.3800 4.9152 42 1 1.2467 3.5312 5.9579 43 1 2.9182 2.9416 6.1215 44 1 -0.1170 0.7950 9.7958 45 1 -1.2926 2.1508 9.7749 46 1 1.1987 2.0784 11.7657 47 1 3.9457 2.3486 8.8000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068232150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:19 Heat of formation + Delta-G solvation = -60.943681 kcal Electronic energy + Delta-G solvation = -27128.553578 eV Core-core repulsion = 23244.442468 eV Total energy + Delta-G solvation = -3884.111109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73542 -38.63242 -37.58569 -36.01364 -34.93793 -33.91070 -32.65655 -31.97149 -30.81162 -29.41748 -27.92669 -25.76327 -24.64462 -22.97818 -22.32487 -22.09609 -21.27103 -20.86149 -18.61406 -18.51036 -16.91708 -16.76857 -16.71784 -16.48737 -15.80855 -15.74040 -15.36717 -15.03229 -14.75389 -14.42041 -14.37143 -14.15573 -13.89321 -13.57644 -13.09492 -12.86566 -12.80374 -12.57269 -12.51008 -12.03026 -11.90476 -11.71963 -11.52532 -11.15482 -11.13144 -11.03338 -10.86531 -10.73490 -10.65248 -10.61476 -10.40972 -10.29257 -10.17492 -10.00620 -9.73784 -9.52809 -8.92509 -8.32790 -8.15619 -7.45746 -6.30928 -3.91264 1.23786 1.69945 2.37383 2.67541 3.16106 3.27040 3.33630 3.35736 3.70093 3.74833 3.96978 4.13741 4.18417 4.21589 4.42891 4.67666 4.85639 4.89667 4.98751 4.99415 5.05963 5.15602 5.18125 5.28935 5.47603 5.62504 5.69682 5.82165 5.90222 5.99020 6.05866 6.13462 6.20291 6.26609 6.42162 6.50159 6.54820 6.63495 6.68175 6.72697 6.88189 6.91898 7.29898 7.61974 8.16404 8.28292 8.55014 9.23023 9.46859 10.07154 10.72859 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.001910 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.149796 B =14653.580963 C =15110.548016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.444 5.444 4 C -0.305 4.305 5 H 0.091 0.909 6 C 0.033 3.967 7 N -0.871 5.871 8 Si 0.915 3.085 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.456 3.544 13 O -0.587 6.587 14 C -0.134 4.134 15 C -0.097 4.097 16 C -0.120 4.120 17 C -0.102 4.102 18 C -0.049 4.049 19 H 0.107 0.893 20 S -0.246 6.246 21 C -0.093 4.093 22 C 0.125 3.875 23 H 0.110 0.890 24 N -0.736 5.736 25 C 0.700 3.300 26 O -0.585 6.585 27 N -0.732 5.732 28 C 0.124 3.876 29 H 0.113 0.887 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.047 0.953 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.115 0.885 46 H 0.431 0.569 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.751 1.203 22.350 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.163 5.163 4 C -0.433 4.433 5 H 0.109 0.891 6 C -0.171 4.171 7 N -0.509 5.509 8 Si 0.742 3.258 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.245 3.755 13 O -0.471 6.471 14 C -0.174 4.174 15 C -0.135 4.135 16 C -0.158 4.158 17 C -0.141 4.141 18 C -0.178 4.178 19 H 0.125 0.875 20 S -0.020 6.020 21 C -0.242 4.242 22 C 0.017 3.983 23 H 0.128 0.872 24 N -0.399 5.399 25 C 0.398 3.602 26 O -0.462 6.462 27 N -0.395 5.395 28 C 0.016 3.984 29 H 0.131 0.869 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.118 0.882 45 H 0.134 0.866 46 H 0.273 0.727 47 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -8.920 1.297 21.768 23.561 hybrid contribution 0.883 -0.067 0.032 0.886 sum -8.037 1.229 21.800 23.267 Atomic orbital electron populations 1.22205 0.98317 1.00263 1.01447 1.21573 0.91651 0.85594 1.04042 1.43568 1.55789 1.11846 1.05068 1.19492 1.39405 0.95398 0.88963 0.89101 1.25322 0.94687 0.96556 1.00491 1.69930 1.32925 1.15387 1.32707 0.86045 0.78090 0.79085 0.82558 1.19226 1.20839 1.20638 1.20369 0.82270 0.87904 0.85001 1.90499 1.50652 1.18939 1.87015 1.21618 1.02075 0.99403 0.94297 1.21242 1.02465 0.98156 0.91650 1.21665 1.01932 0.98093 0.94061 1.21609 1.02494 0.99244 0.90717 1.24537 0.93438 1.02181 0.97691 0.87460 1.88475 1.10178 1.97157 1.06150 1.24634 1.01672 1.02659 0.95248 1.22509 0.91247 0.98793 0.85782 0.87198 1.45394 1.08728 1.71498 1.14311 1.16023 0.83135 0.78313 0.82692 1.91019 1.47517 1.52761 1.54926 1.45396 1.11828 1.70936 1.11319 1.22663 0.83974 1.00251 0.91560 0.86943 0.93175 0.93884 0.92541 0.86999 0.93454 0.92362 0.90496 0.90641 0.91541 0.91530 0.91893 0.91596 0.90076 0.90155 0.88239 0.86632 0.72659 0.72349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.15 37.16 0.38 -2.58 16 2 C 0.10 2.07 5.43 -4.05 -0.02 2.05 16 3 N -0.44 -11.24 2.56 -114.81 -0.29 -11.53 16 4 C -0.30 -8.49 8.98 -14.93 -0.13 -8.62 16 5 H 0.09 2.67 7.70 -52.49 -0.40 2.26 16 6 C 0.03 0.87 4.92 -17.47 -0.09 0.78 16 7 N -0.87 -23.48 11.33 55.50 0.63 -22.85 16 8 Si 0.92 20.62 29.61 -169.99 -5.03 15.59 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 C 0.46 11.04 7.59 -10.99 -0.08 10.95 16 13 O -0.59 -16.23 15.81 5.55 0.09 -16.14 16 14 C -0.13 -2.37 4.31 -27.88 -0.12 -2.49 16 15 C -0.10 -1.46 4.50 -26.73 -0.12 -1.58 16 16 C -0.12 -1.31 5.12 -26.73 -0.14 -1.44 16 17 C -0.10 -0.84 4.60 -26.73 -0.12 -0.96 16 18 C -0.05 -0.34 2.96 -26.14 -0.08 -0.42 16 19 H 0.11 0.84 8.01 -51.93 -0.42 0.42 16 20 S -0.25 -1.94 22.04 -107.50 -2.37 -4.31 16 21 C -0.09 -0.45 7.14 37.75 0.27 -0.18 16 22 C 0.12 0.58 4.16 -66.81 -0.28 0.30 16 23 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 24 N -0.74 -4.50 5.91 -57.93 -0.34 -4.84 16 25 C 0.70 6.81 8.92 -88.31 -0.79 6.02 16 26 O -0.58 -8.41 18.05 5.30 0.10 -8.32 16 27 N -0.73 -5.29 5.91 -57.94 -0.34 -5.63 16 28 C 0.12 0.70 3.75 -66.82 -0.25 0.45 16 29 H 0.11 0.51 7.83 -51.93 -0.41 0.11 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.72 6.59 -51.93 -0.34 0.38 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.11 2.70 5.34 -51.93 -0.28 2.42 16 34 H 0.05 0.93 6.66 -51.93 -0.35 0.59 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.08 1.30 7.41 -51.93 -0.38 0.91 16 37 H 0.08 1.22 6.53 -51.93 -0.34 0.88 16 38 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16 42 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.52 8.01 -51.93 -0.42 0.11 16 45 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.43 1.91 8.96 -40.82 -0.37 1.54 16 47 H 0.43 2.77 8.96 -40.82 -0.37 2.40 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -34.97 386.14 -10.72 -45.69 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.39 Total: 4.23 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.57 Total: 2.29 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.35 Total: -44.85 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.18 Total: -24.46 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -2.37 Total: -4.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.97 -10.72 -45.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.255 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds