Wall clock time and date at job start Wed Apr 1 2020 01:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47161 * 2 1 4 4 C 1.37101 * 120.00149 * 264.74423 * 3 2 1 5 5 H 1.07997 * 119.99779 * 146.16907 * 4 3 2 6 6 C 1.38950 * 119.99971 * 326.16926 * 4 3 2 7 7 N 1.31412 * 119.99888 * 337.68372 * 6 4 3 8 8 Si 1.86794 * 120.00224 * 157.68155 * 6 4 3 9 9 H 1.48503 * 109.47018 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47273 * 119.99694 * 8 6 4 11 11 H 1.48500 * 109.47473 * 240.00234 * 8 6 4 12 12 C 1.34774 * 119.99968 * 84.74677 * 3 2 1 13 13 O 1.21294 * 119.99939 * 179.97438 * 12 3 2 14 14 C 1.50702 * 120.00016 * 359.97438 * 12 3 2 15 15 C 1.53003 * 109.46930 * 180.02562 * 14 12 3 16 16 C 1.53000 * 109.46813 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47338 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47338 * 179.97438 * 17 16 15 19 19 H 1.09002 * 110.82175 * 51.64941 * 18 17 16 20 20 S 1.83905 * 110.76253 * 288.29260 * 18 17 16 21 21 C 1.83921 * 94.80406 * 207.00408 * 20 18 17 22 22 C 1.54136 * 102.71254 * 34.69098 * 21 20 18 23 23 H 1.08996 * 110.50758 * 99.02782 * 22 21 20 24 24 N 1.47129 * 109.21424 * 220.48763 * 22 21 20 25 25 C 1.33999 * 109.04476 * 120.18559 * 24 22 21 26 26 O 1.21580 * 123.05776 * 179.97438 * 25 24 22 27 27 N 1.33994 * 113.88278 * 359.97438 * 25 24 22 28 28 C 1.47130 * 109.04463 * 0.02562 * 27 25 24 29 29 H 1.09002 * 110.25957 * 118.21220 * 28 27 25 30 30 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47647 * 300.00232 * 1 2 3 32 32 H 1.09004 * 109.46962 * 60.00446 * 1 2 3 33 33 H 1.09005 * 109.47433 * 239.99529 * 2 1 3 34 34 H 1.09001 * 109.47038 * 120.00324 * 2 1 3 35 35 H 0.96998 * 120.00323 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.46959 * 60.00426 * 14 12 3 37 37 H 1.08997 * 109.46853 * 299.99967 * 14 12 3 38 38 H 1.08996 * 109.47294 * 60.00163 * 15 14 12 39 39 H 1.08997 * 109.47250 * 299.99631 * 15 14 12 40 40 H 1.09002 * 109.47520 * 60.00522 * 16 15 14 41 41 H 1.09005 * 109.47509 * 299.99985 * 16 15 14 42 42 H 1.08994 * 109.46717 * 59.99581 * 17 16 15 43 43 H 1.09005 * 109.46747 * 300.00376 * 17 16 15 44 44 H 1.08992 * 110.76240 * 276.38217 * 21 20 18 45 45 H 1.09001 * 110.76069 * 152.99677 * 21 20 18 46 46 H 0.96998 * 125.47472 * 300.15704 * 24 22 21 47 47 H 0.96996 * 125.47847 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9913 -1.1823 5 1 2.1816 3.0506 -1.3088 6 6 2.9007 1.2466 -2.2178 7 7 3.5051 0.1087 -1.9593 8 14 2.7827 1.8629 -3.9772 9 1 2.0594 3.1597 -4.0000 10 1 4.1487 2.0489 -4.5292 11 1 2.0467 0.8705 -4.8011 12 6 2.1422 2.0521 1.1623 13 8 2.5469 3.1956 1.1623 14 6 1.7778 1.3817 2.4619 15 6 2.0083 2.3548 3.6198 16 6 1.6390 1.6740 4.9393 17 6 1.8689 2.6472 6.0973 18 6 1.4990 1.9666 7.4167 19 1 2.0007 1.0033 7.5098 20 16 -0.3238 1.7688 7.5596 21 6 -0.3369 1.7859 9.3987 22 6 0.7967 2.7740 9.7368 23 1 0.3893 3.7589 9.9650 24 7 1.5607 2.2602 10.8843 25 6 2.8371 2.0844 10.5164 26 8 3.6937 1.6674 11.2718 27 7 3.0836 2.4098 9.2402 28 6 1.8364 2.8762 8.6142 29 1 1.9413 3.9114 8.2894 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8903 -0.4110 -2.6821 36 1 2.3992 0.4971 2.6010 37 1 0.7283 1.0886 2.4376 38 1 1.3867 3.2393 3.4805 39 1 3.0577 2.6484 3.6443 40 1 2.2610 0.7898 5.0785 41 1 0.5896 1.3800 4.9152 42 1 1.2467 3.5312 5.9579 43 1 2.9182 2.9416 6.1215 44 1 -0.1170 0.7950 9.7958 45 1 -1.2926 2.1508 9.7749 46 1 1.1987 2.0784 11.7657 47 1 3.9457 2.3486 8.8000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068232150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:19 Heat of formation + Delta-G solvation = -85.631498 kcal Electronic energy + Delta-G solvation = -27129.624122 eV Core-core repulsion = 23244.442468 eV Total energy + Delta-G solvation = -3885.181654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.32009 -40.46670 -38.34942 -37.17414 -36.59021 -34.63253 -34.03409 -33.33802 -31.64598 -31.12991 -28.90403 -27.04989 -25.83449 -24.14785 -23.56630 -22.92187 -22.02922 -21.68320 -20.37512 -19.11703 -18.70735 -17.66787 -17.56220 -17.31675 -17.03847 -16.95552 -16.58949 -16.03125 -15.86654 -15.68143 -15.48933 -15.05272 -14.71594 -14.67144 -14.47578 -14.25789 -13.96434 -13.66584 -13.46823 -13.32592 -13.09830 -12.88710 -12.80325 -12.66512 -12.50308 -12.27352 -12.11678 -12.05159 -11.90856 -11.80809 -11.79309 -11.50916 -11.47091 -11.19821 -10.87869 -10.38654 -10.27815 -10.03087 -9.44457 -8.74739 -8.33434 -6.02180 0.72197 1.20105 1.35415 1.40976 1.54686 1.84897 1.97513 2.09413 2.30569 2.87333 3.02749 3.11266 3.24381 3.28011 3.68275 3.73564 3.93740 4.03127 4.08681 4.18294 4.20851 4.33328 4.43165 4.54335 4.55576 4.66043 4.67980 4.69059 4.77536 4.79951 4.82867 4.93242 4.96054 5.04354 5.10257 5.25458 5.33738 5.42394 5.47569 5.53834 5.60434 5.91518 6.21600 6.22533 6.27932 6.56528 7.21224 7.51016 7.53088 8.12556 8.68753 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.001910 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.149796 B =14653.580963 C =15110.548016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 N -0.458 5.458 4 C -0.340 4.340 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.889 5.889 8 Si 0.979 3.021 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.263 1.263 12 C 0.439 3.561 13 O -0.634 6.634 14 C -0.121 4.121 15 C -0.090 4.090 16 C -0.108 4.108 17 C -0.098 4.098 18 C -0.036 4.036 19 H 0.100 0.900 20 S -0.291 6.291 21 C -0.076 4.076 22 C 0.128 3.872 23 H 0.140 0.860 24 N -0.723 5.723 25 C 0.692 3.308 26 O -0.639 6.639 27 N -0.726 5.726 28 C 0.124 3.876 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.273 0.727 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.139 0.861 46 H 0.439 0.561 47 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.284 0.677 23.300 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.177 5.177 4 C -0.468 4.468 5 H 0.079 0.921 6 C -0.202 4.202 7 N -0.527 5.527 8 Si 0.803 3.197 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.188 1.188 12 C 0.230 3.770 13 O -0.521 6.521 14 C -0.161 4.161 15 C -0.128 4.128 16 C -0.146 4.146 17 C -0.136 4.136 18 C -0.165 4.165 19 H 0.118 0.882 20 S -0.064 6.064 21 C -0.225 4.225 22 C 0.020 3.980 23 H 0.157 0.843 24 N -0.386 5.386 25 C 0.390 3.610 26 O -0.521 6.521 27 N -0.388 5.388 28 C 0.016 3.984 29 H 0.149 0.851 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.157 0.843 46 H 0.283 0.717 47 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -10.504 0.743 22.705 25.028 hybrid contribution 1.362 0.078 -0.288 1.394 sum -9.142 0.821 22.417 24.223 Atomic orbital electron populations 1.22096 0.95376 1.02411 1.01252 1.21680 0.94050 0.83534 1.03708 1.43883 1.55849 1.13120 1.04830 1.19402 1.41570 0.94705 0.91168 0.92110 1.26053 0.93695 0.96660 1.03772 1.69992 1.32653 1.15993 1.34058 0.85106 0.78129 0.78657 0.77815 1.19702 1.20462 1.18782 1.21478 0.81245 0.87563 0.86739 1.90454 1.52613 1.21106 1.87965 1.21603 1.03392 0.99722 0.91411 1.21175 1.01241 0.97455 0.92911 1.21532 1.01959 0.98489 0.92580 1.21537 1.03126 0.98654 0.90316 1.24363 0.92701 1.01944 0.97524 0.88176 1.88651 1.10976 1.97247 1.09567 1.24678 1.02836 1.02706 0.92287 1.22704 0.90615 1.00052 0.84581 0.84285 1.45343 1.07613 1.70522 1.15095 1.16299 0.83641 0.78127 0.82950 1.90976 1.49337 1.55288 1.56471 1.45403 1.12547 1.70182 1.10651 1.22830 0.83487 1.00723 0.91331 0.85118 0.89771 0.92558 0.94253 0.89435 0.91536 0.91718 0.89167 0.88501 0.92901 0.93146 0.91231 0.91503 0.89908 0.89349 0.88570 0.84305 0.71696 0.72088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 10.15 71.98 0.73 -4.52 16 2 C 0.09 4.00 5.43 86.38 0.47 4.47 16 3 N -0.46 -23.64 2.56 -635.54 -1.63 -25.26 16 4 C -0.34 -19.57 8.98 84.04 0.75 -18.82 16 5 H 0.06 3.77 7.70 -2.91 -0.02 3.75 16 6 C 0.00 0.01 4.92 84.93 0.42 0.43 16 7 N -0.89 -48.07 11.33 21.66 0.25 -47.83 16 8 Si 0.98 42.62 29.61 68.60 2.03 44.65 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 12 C 0.44 21.69 7.59 87.66 0.67 22.35 16 13 O -0.63 -36.49 15.81 -3.07 -0.05 -36.54 16 14 C -0.12 -4.21 4.31 29.85 0.13 -4.08 16 15 C -0.09 -2.66 4.50 30.60 0.14 -2.52 16 16 C -0.11 -2.18 5.12 30.60 0.16 -2.02 16 17 C -0.10 -1.43 4.60 30.60 0.14 -1.29 16 18 C -0.04 -0.43 2.96 30.97 0.09 -0.34 16 19 H 0.10 1.39 8.01 -2.39 -0.02 1.37 16 20 S -0.29 -3.96 22.04 -56.49 -1.25 -5.20 16 21 C -0.08 -0.50 7.14 72.37 0.52 0.01 16 22 C 0.13 0.79 4.16 45.37 0.19 0.98 16 23 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 24 N -0.72 -7.32 5.91 -455.90 -2.69 -10.01 16 25 C 0.69 12.74 8.92 179.54 1.60 14.34 16 26 O -0.64 -18.48 18.05 -3.97 -0.07 -18.55 16 27 N -0.73 -9.43 5.91 -455.92 -2.69 -12.13 16 28 C 0.12 1.10 3.75 45.37 0.17 1.27 16 29 H 0.13 0.78 7.83 -2.39 -0.02 0.76 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.06 1.76 6.59 -2.39 -0.02 1.75 16 32 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.09 4.21 5.34 -2.38 -0.01 4.20 16 34 H 0.07 2.53 6.66 -2.39 -0.02 2.51 16 35 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 36 H 0.09 2.90 7.41 -2.39 -0.02 2.88 16 37 H 0.10 2.94 6.53 -2.39 -0.02 2.93 16 38 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 39 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.37 7.56 -2.38 -0.02 1.35 16 42 H 0.08 1.22 8.13 -2.39 -0.02 1.20 16 43 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.10 0.76 8.01 -2.39 -0.02 0.74 16 45 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.44 2.99 8.96 -92.71 -0.83 2.16 16 47 H 0.44 5.14 8.96 -92.71 -0.83 4.31 16 Total: -1.00 -79.63 386.14 -0.59 -80.23 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.66 Total: 20.39 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 6.17 Total: 10.26 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -6.77 Total: -95.23 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -0.12 Total: -55.09 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -1.25 Total: -5.20 kcal Total: -79.63 -0.59 -80.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.405 kcal (2) G-P(sol) polarization free energy of solvation -79.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds