Wall clock time and date at job start Wed Apr 1 2020 01:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47015 * 2 1 4 4 C 1.37102 * 120.00241 * 95.71597 * 3 2 1 5 5 H 1.07992 * 120.00052 * 170.14351 * 4 3 2 6 6 C 1.38954 * 119.99887 * 350.14739 * 4 3 2 7 7 N 1.31416 * 119.99650 * 332.76021 * 6 4 3 8 8 Si 1.86792 * 120.00164 * 152.75958 * 6 4 3 9 9 H 1.48503 * 109.47170 * 265.24223 * 8 6 4 10 10 H 1.48496 * 109.47341 * 145.23976 * 8 6 4 11 11 H 1.48500 * 109.47152 * 25.24194 * 8 6 4 12 12 C 1.34781 * 119.99796 * 275.72135 * 3 2 1 13 13 O 1.21289 * 119.99615 * 180.02562 * 12 3 2 14 14 C 1.50698 * 119.99808 * 359.97438 * 12 3 2 15 15 C 1.53008 * 109.46741 * 180.02562 * 14 12 3 16 16 C 1.52995 * 109.46894 * 180.02562 * 15 14 12 17 17 C 1.53008 * 109.46894 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.46802 * 180.02562 * 17 16 15 19 19 H 1.09000 * 110.68131 * 54.29837 * 18 17 16 20 20 S 1.83919 * 110.76167 * 291.04986 * 18 17 16 21 21 C 1.83916 * 94.80541 * 207.01556 * 20 18 17 22 22 C 1.54132 * 102.71453 * 34.68891 * 21 20 18 23 23 H 1.09000 * 110.25396 * 211.56256 * 22 21 20 24 24 N 1.47131 * 109.22444 * 90.26170 * 22 21 20 25 25 C 1.33993 * 109.04788 * 239.79996 * 24 22 21 26 26 O 1.21587 * 123.05896 * 179.97438 * 25 24 22 27 27 N 1.34002 * 113.88261 * 0.02562 * 25 24 22 28 28 C 1.47353 * 109.18295 * 359.87479 * 27 25 24 29 29 H 1.08999 * 110.86205 * 241.57466 * 28 27 25 30 30 H 1.09009 * 109.47087 * 300.00011 * 1 2 3 31 31 H 1.09000 * 109.47737 * 60.00149 * 1 2 3 32 32 H 1.08997 * 109.47386 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47174 * 240.00307 * 2 1 3 34 34 H 1.08996 * 109.47256 * 119.99917 * 2 1 3 35 35 H 0.96997 * 119.99532 * 180.02562 * 7 6 4 36 36 H 1.08993 * 109.47615 * 300.00053 * 14 12 3 37 37 H 1.09003 * 109.46787 * 60.00948 * 14 12 3 38 38 H 1.09004 * 109.47353 * 300.00387 * 15 14 12 39 39 H 1.09004 * 109.47054 * 60.00213 * 15 14 12 40 40 H 1.09002 * 109.47763 * 299.99918 * 16 15 14 41 41 H 1.09004 * 109.47122 * 60.00223 * 16 15 14 42 42 H 1.08995 * 109.47376 * 300.00063 * 17 16 15 43 43 H 1.08993 * 109.47064 * 60.00682 * 17 16 15 44 44 H 1.09005 * 110.76286 * 152.99349 * 21 20 18 45 45 H 1.09002 * 110.76318 * 276.19947 * 21 20 18 46 46 H 0.97000 * 125.47448 * 59.76894 * 24 22 21 47 47 H 0.97007 * 125.47832 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3583 1.9882 1.1814 5 1 2.8651 2.9418 1.1723 6 6 2.0509 1.3763 2.3905 7 7 1.0265 0.5570 2.4704 8 14 3.0935 1.7184 3.9021 9 1 4.1336 0.6666 4.0344 10 1 2.2300 1.7153 5.1102 11 1 3.7460 3.0451 3.7635 12 6 2.1332 2.0554 -1.1614 13 8 2.5379 3.1988 -1.1615 14 6 1.7599 1.3881 -2.4600 15 6 1.9825 2.3640 -3.6173 16 6 1.6029 1.6867 -4.9356 17 6 1.8261 2.6624 -6.0929 18 6 1.4459 1.9853 -7.4112 19 1 0.4293 1.5949 -7.3643 20 16 2.6392 0.6485 -7.8254 21 6 2.3725 0.7612 -9.6417 22 6 2.1316 2.2684 -9.8562 23 1 1.4486 2.4263 -10.6910 24 7 3.4182 2.9323 -10.1182 25 6 3.6299 3.8625 -9.1773 26 8 4.6220 4.5648 -9.1503 27 7 2.6491 3.9476 -8.2682 28 6 1.6018 2.9629 -8.5922 29 1 0.6534 3.4587 -8.7988 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.8117 0.1302 3.3145 36 1 2.3808 0.5043 -2.6061 37 1 0.7107 1.0941 -2.4289 38 1 1.3619 3.2481 -3.4715 39 1 3.0318 2.6577 -3.6482 40 1 2.2232 0.8024 -5.0817 41 1 0.5536 1.3934 -4.9045 42 1 1.2062 3.5469 -5.9472 43 1 2.8755 2.9553 -6.1240 44 1 3.2586 0.4306 -10.1836 45 1 1.4996 0.1811 -9.9408 46 1 4.0172 2.7288 -10.8535 47 1 2.6293 4.5612 -7.5171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:22 Heat of formation + Delta-G solvation = -47.778687 kcal Electronic energy + Delta-G solvation = -27496.603510 eV Core-core repulsion = 23613.063278 eV Total energy + Delta-G solvation = -3883.540232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66086 -38.62945 -37.46946 -36.01305 -35.00841 -33.79686 -32.44180 -31.78087 -30.69486 -29.35622 -27.92441 -25.80462 -24.53850 -23.01353 -22.29491 -21.98726 -20.91310 -20.80452 -18.58208 -18.49956 -17.14593 -16.77584 -16.57712 -16.29003 -15.92747 -15.84100 -15.28477 -14.94766 -14.53986 -14.24632 -14.21676 -14.11231 -13.64618 -13.34002 -13.10397 -12.87275 -12.71511 -12.66994 -12.48279 -12.11597 -11.75718 -11.65982 -11.36263 -11.16395 -11.00672 -10.88435 -10.75172 -10.69308 -10.50618 -10.44149 -10.31410 -10.23121 -10.05141 -9.75543 -9.63528 -9.39048 -8.87393 -8.27370 -8.02587 -7.70773 -6.32768 -3.72759 1.35819 1.83227 2.40429 2.84871 3.17591 3.28805 3.34700 3.45142 3.65174 3.80667 3.95832 4.14067 4.18847 4.30482 4.55598 4.65349 4.82804 4.88243 4.98662 5.06101 5.07823 5.15439 5.19432 5.30655 5.50707 5.63357 5.75314 5.85477 6.03599 6.05928 6.10803 6.17613 6.35538 6.53283 6.63047 6.63800 6.70872 6.75323 6.79448 6.80971 7.02997 7.24142 7.49903 7.81417 8.15637 8.31882 8.56727 9.24509 9.50965 10.07496 10.67891 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.002073 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.624601 B =13506.825796 C =14194.753841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 N -0.445 5.445 4 C -0.308 4.308 5 H 0.103 0.897 6 C 0.031 3.969 7 N -0.864 5.864 8 Si 0.914 3.086 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.442 3.558 13 O -0.596 6.596 14 C -0.129 4.129 15 C -0.097 4.097 16 C -0.118 4.118 17 C -0.103 4.103 18 C -0.048 4.048 19 H 0.110 0.890 20 S -0.256 6.256 21 C -0.092 4.092 22 C 0.124 3.876 23 H 0.106 0.894 24 N -0.733 5.733 25 C 0.705 3.295 26 O -0.584 6.584 27 N -0.727 5.727 28 C 0.124 3.876 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.023 0.977 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.092 0.908 35 H 0.266 0.734 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.430 0.570 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -3.284 -25.738 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.001 3.999 3 N -0.163 5.163 4 C -0.436 4.436 5 H 0.121 0.879 6 C -0.172 4.172 7 N -0.504 5.504 8 Si 0.741 3.259 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.194 1.194 12 C 0.230 3.770 13 O -0.481 6.481 14 C -0.169 4.169 15 C -0.135 4.135 16 C -0.156 4.156 17 C -0.142 4.142 18 C -0.178 4.178 19 H 0.129 0.871 20 S -0.030 6.030 21 C -0.242 4.242 22 C 0.016 3.984 23 H 0.124 0.876 24 N -0.396 5.396 25 C 0.404 3.596 26 O -0.461 6.461 27 N -0.390 5.390 28 C 0.015 3.985 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.131 0.869 45 H 0.122 0.878 46 H 0.272 0.728 47 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -3.567 -3.201 -24.861 25.319 hybrid contribution -0.328 0.480 0.129 0.596 sum -3.894 -2.721 -24.732 25.184 Atomic orbital electron populations 1.22206 0.96645 0.99771 1.02445 1.21300 0.94576 0.83744 1.00256 1.43858 1.55776 1.11157 1.05535 1.19712 1.35202 1.06598 0.82075 0.87933 1.25161 0.95799 0.97378 0.98859 1.70115 1.22496 1.31149 1.26639 0.86100 0.80121 0.79066 0.80612 1.20521 1.21199 1.19417 1.20026 0.84869 0.86914 0.85153 1.90494 1.51912 1.18618 1.87118 1.21554 1.02117 0.99106 0.94142 1.21237 1.02478 0.98117 0.91645 1.21648 1.01656 0.98239 0.94015 1.21536 1.03163 0.98764 0.90711 1.24493 1.00754 0.94587 0.97985 0.87144 1.88520 1.58260 1.50882 1.05306 1.24622 1.06393 0.96949 0.96187 1.22403 0.86930 0.91399 0.97686 0.87635 1.45248 1.23211 1.39759 1.31378 1.15883 0.82943 0.80665 0.80073 1.91020 1.29656 1.48310 1.77115 1.45349 1.21354 1.40896 1.31416 1.22537 0.93500 0.90360 0.92084 0.87283 0.88308 0.95773 0.94571 0.94849 0.89023 0.92401 0.90949 0.90466 0.91579 0.91588 0.91666 0.91872 0.90307 0.90095 0.86929 0.87821 0.72763 0.72209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.65 37.16 0.36 -2.81 16 2 C 0.13 2.79 5.07 -4.04 -0.02 2.77 16 3 N -0.44 -11.41 2.64 -114.81 -0.30 -11.72 16 4 C -0.31 -8.64 9.39 -14.93 -0.14 -8.78 16 5 H 0.10 3.07 7.34 -52.49 -0.39 2.68 16 6 C 0.03 0.81 4.81 -17.46 -0.08 0.72 16 7 N -0.86 -22.21 8.67 55.50 0.48 -21.72 16 8 Si 0.91 20.66 29.63 -169.99 -5.04 15.62 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.44 10.84 7.59 -10.98 -0.08 10.75 16 13 O -0.60 -16.69 15.58 5.55 0.09 -16.60 16 14 C -0.13 -2.35 4.31 -27.88 -0.12 -2.47 16 15 C -0.10 -1.52 4.50 -26.73 -0.12 -1.64 16 16 C -0.12 -1.35 5.10 -26.73 -0.14 -1.48 16 17 C -0.10 -0.93 3.66 -26.73 -0.10 -1.03 16 18 C -0.05 -0.33 3.22 -26.16 -0.08 -0.41 16 19 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 20 S -0.26 -2.29 21.89 -107.50 -2.35 -4.64 16 21 C -0.09 -0.43 7.10 37.75 0.27 -0.16 16 22 C 0.12 0.54 4.16 -66.66 -0.28 0.27 16 23 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 24 N -0.73 -5.08 5.94 -57.78 -0.34 -5.43 16 25 C 0.71 7.71 8.92 -88.31 -0.79 6.92 16 26 O -0.58 -9.30 18.05 5.29 0.10 -9.20 16 27 N -0.73 -5.97 4.87 -57.65 -0.28 -6.25 16 28 C 0.12 0.66 4.05 -66.55 -0.27 0.39 16 29 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 2.37 6.10 -51.92 -0.32 2.06 16 31 H 0.02 0.46 6.54 -51.93 -0.34 0.12 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.65 6.68 -51.93 -0.35 0.30 16 34 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 35 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 36 H 0.07 1.23 7.41 -51.93 -0.39 0.85 16 37 H 0.08 1.32 6.49 -51.93 -0.34 0.98 16 38 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 39 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 40 H 0.06 0.80 7.43 -51.93 -0.39 0.41 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.88 7.25 -51.93 -0.38 0.50 16 44 H 0.11 0.49 8.07 -51.93 -0.42 0.07 16 45 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.43 2.31 8.96 -40.82 -0.37 1.95 16 47 H 0.43 3.45 7.96 -40.82 -0.33 3.12 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -35.22 377.91 -10.79 -46.01 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.23 Total: 5.20 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -1.59 Total: 3.03 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.45 Total: -45.11 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: 0.18 Total: -25.80 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.04 Total: 15.62 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.35 Total: -4.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.22 -10.79 -46.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.772 kcal (2) G-P(sol) polarization free energy of solvation -35.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds