Wall clock time and date at job start Wed Apr 1 2020 01:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47015 * 2 1 4 4 C 1.37102 * 120.00241 * 95.71597 * 3 2 1 5 5 H 1.07992 * 120.00052 * 170.14351 * 4 3 2 6 6 C 1.38954 * 119.99887 * 350.14739 * 4 3 2 7 7 N 1.31416 * 119.99650 * 332.76021 * 6 4 3 8 8 Si 1.86792 * 120.00164 * 152.75958 * 6 4 3 9 9 H 1.48503 * 109.47170 * 265.24223 * 8 6 4 10 10 H 1.48496 * 109.47341 * 145.23976 * 8 6 4 11 11 H 1.48500 * 109.47152 * 25.24194 * 8 6 4 12 12 C 1.34781 * 119.99796 * 275.72135 * 3 2 1 13 13 O 1.21289 * 119.99615 * 180.02562 * 12 3 2 14 14 C 1.50698 * 119.99808 * 359.97438 * 12 3 2 15 15 C 1.53008 * 109.46741 * 180.02562 * 14 12 3 16 16 C 1.52995 * 109.46894 * 180.02562 * 15 14 12 17 17 C 1.53008 * 109.46894 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.46802 * 180.02562 * 17 16 15 19 19 H 1.09000 * 110.68131 * 54.29837 * 18 17 16 20 20 S 1.83919 * 110.76167 * 291.04986 * 18 17 16 21 21 C 1.83916 * 94.80541 * 207.01556 * 20 18 17 22 22 C 1.54132 * 102.71453 * 34.68891 * 21 20 18 23 23 H 1.09000 * 110.25396 * 211.56256 * 22 21 20 24 24 N 1.47131 * 109.22444 * 90.26170 * 22 21 20 25 25 C 1.33993 * 109.04788 * 239.79996 * 24 22 21 26 26 O 1.21587 * 123.05896 * 179.97438 * 25 24 22 27 27 N 1.34002 * 113.88261 * 0.02562 * 25 24 22 28 28 C 1.47353 * 109.18295 * 359.87479 * 27 25 24 29 29 H 1.08999 * 110.86205 * 241.57466 * 28 27 25 30 30 H 1.09009 * 109.47087 * 300.00011 * 1 2 3 31 31 H 1.09000 * 109.47737 * 60.00149 * 1 2 3 32 32 H 1.08997 * 109.47386 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47174 * 240.00307 * 2 1 3 34 34 H 1.08996 * 109.47256 * 119.99917 * 2 1 3 35 35 H 0.96997 * 119.99532 * 180.02562 * 7 6 4 36 36 H 1.08993 * 109.47615 * 300.00053 * 14 12 3 37 37 H 1.09003 * 109.46787 * 60.00948 * 14 12 3 38 38 H 1.09004 * 109.47353 * 300.00387 * 15 14 12 39 39 H 1.09004 * 109.47054 * 60.00213 * 15 14 12 40 40 H 1.09002 * 109.47763 * 299.99918 * 16 15 14 41 41 H 1.09004 * 109.47122 * 60.00223 * 16 15 14 42 42 H 1.08995 * 109.47376 * 300.00063 * 17 16 15 43 43 H 1.08993 * 109.47064 * 60.00682 * 17 16 15 44 44 H 1.09005 * 110.76286 * 152.99349 * 21 20 18 45 45 H 1.09002 * 110.76318 * 276.19947 * 21 20 18 46 46 H 0.97000 * 125.47448 * 59.76894 * 24 22 21 47 47 H 0.97007 * 125.47832 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3583 1.9882 1.1814 5 1 2.8651 2.9418 1.1723 6 6 2.0509 1.3763 2.3905 7 7 1.0265 0.5570 2.4704 8 14 3.0935 1.7184 3.9021 9 1 4.1336 0.6666 4.0344 10 1 2.2300 1.7153 5.1102 11 1 3.7460 3.0451 3.7635 12 6 2.1332 2.0554 -1.1614 13 8 2.5379 3.1988 -1.1615 14 6 1.7599 1.3881 -2.4600 15 6 1.9825 2.3640 -3.6173 16 6 1.6029 1.6867 -4.9356 17 6 1.8261 2.6624 -6.0929 18 6 1.4459 1.9853 -7.4112 19 1 0.4293 1.5949 -7.3643 20 16 2.6392 0.6485 -7.8254 21 6 2.3725 0.7612 -9.6417 22 6 2.1316 2.2684 -9.8562 23 1 1.4486 2.4263 -10.6910 24 7 3.4182 2.9323 -10.1182 25 6 3.6299 3.8625 -9.1773 26 8 4.6220 4.5648 -9.1503 27 7 2.6491 3.9476 -8.2682 28 6 1.6018 2.9629 -8.5922 29 1 0.6534 3.4587 -8.7988 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.8117 0.1302 3.3145 36 1 2.3808 0.5043 -2.6061 37 1 0.7107 1.0941 -2.4289 38 1 1.3619 3.2481 -3.4715 39 1 3.0318 2.6577 -3.6482 40 1 2.2232 0.8024 -5.0817 41 1 0.5536 1.3934 -4.9045 42 1 1.2062 3.5469 -5.9472 43 1 2.8755 2.9553 -6.1240 44 1 3.2586 0.4306 -10.1836 45 1 1.4996 0.1811 -9.9408 46 1 4.0172 2.7288 -10.8535 47 1 2.6293 4.5612 -7.5171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:21 Heat of formation + Delta-G solvation = -72.919286 kcal Electronic energy + Delta-G solvation = -27497.693688 eV Core-core repulsion = 23613.063278 eV Total energy + Delta-G solvation = -3884.630411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.26553 -40.49647 -38.29131 -37.25115 -36.62407 -34.62476 -33.82563 -33.12564 -31.61690 -31.11878 -28.84286 -27.06125 -25.81733 -24.10848 -23.67145 -22.94726 -21.79692 -21.48511 -20.36450 -19.09576 -18.75900 -17.90124 -17.69229 -17.19391 -16.94773 -16.78323 -16.43232 -16.10897 -15.97077 -15.72176 -15.38647 -14.97277 -14.61522 -14.50977 -14.38281 -14.00930 -13.89017 -13.74681 -13.54556 -13.15706 -13.06689 -12.90522 -12.85613 -12.68878 -12.46906 -12.18083 -12.11310 -12.00320 -11.90649 -11.79600 -11.61293 -11.43072 -11.41261 -11.06204 -10.83852 -10.29779 -10.24756 -9.91321 -9.69215 -8.66186 -8.33934 -5.82646 0.86679 1.34288 1.37811 1.41557 1.52579 1.82667 2.05923 2.10108 2.28909 2.98815 3.04070 3.10209 3.25493 3.35170 3.71472 3.83158 4.01663 4.06219 4.12472 4.18303 4.30384 4.39073 4.40221 4.55959 4.64529 4.67078 4.72839 4.79253 4.80016 4.87010 4.88866 4.91953 4.99747 5.03477 5.16862 5.24557 5.40974 5.44167 5.47414 5.51949 5.97435 5.97864 6.10774 6.25637 6.39296 6.56969 7.22127 7.54700 7.58603 8.11960 8.64074 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.002073 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.624601 B =13506.825796 C =14194.753841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.124 3.876 3 N -0.457 5.457 4 C -0.355 4.355 5 H 0.066 0.934 6 C 0.008 3.992 7 N -0.864 5.864 8 Si 0.975 3.025 9 H -0.269 1.269 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.424 3.576 13 O -0.644 6.644 14 C -0.116 4.116 15 C -0.090 4.090 16 C -0.104 4.104 17 C -0.101 4.101 18 C -0.028 4.028 19 H 0.138 0.862 20 S -0.351 6.351 21 C -0.068 4.068 22 C 0.126 3.874 23 H 0.151 0.849 24 N -0.724 5.724 25 C 0.694 3.306 26 O -0.647 6.647 27 N -0.726 5.726 28 C 0.122 3.878 29 H 0.149 0.851 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.273 0.727 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.055 0.945 44 H 0.114 0.886 45 H 0.134 0.866 46 H 0.436 0.564 47 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.499 -5.213 -27.679 29.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.001 3.999 3 N -0.175 5.175 4 C -0.483 4.483 5 H 0.084 0.916 6 C -0.196 4.196 7 N -0.501 5.501 8 Si 0.799 3.201 9 H -0.194 1.194 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.215 3.785 13 O -0.533 6.533 14 C -0.156 4.156 15 C -0.128 4.128 16 C -0.142 4.142 17 C -0.139 4.139 18 C -0.157 4.157 19 H 0.156 0.844 20 S -0.125 6.125 21 C -0.217 4.217 22 C 0.019 3.981 23 H 0.168 0.832 24 N -0.386 5.386 25 C 0.392 3.608 26 O -0.530 6.530 27 N -0.387 5.387 28 C 0.015 3.985 29 H 0.167 0.833 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.133 0.867 45 H 0.152 0.848 46 H 0.279 0.721 47 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -6.225 -5.218 -26.812 28.015 hybrid contribution 0.435 1.039 0.781 1.371 sum -5.790 -4.179 -26.031 26.993 Atomic orbital electron populations 1.22042 0.95273 1.01323 1.01392 1.21412 0.95660 0.82003 1.00788 1.44122 1.55723 1.12382 1.05262 1.19513 1.37793 1.06768 0.84176 0.91580 1.25796 0.96168 0.96977 1.00646 1.70189 1.21951 1.30389 1.27621 0.85219 0.78782 0.78411 0.77676 1.19397 1.19732 1.20733 1.21161 0.83817 0.86693 0.86841 1.90450 1.53870 1.20964 1.88061 1.21538 1.03359 0.99502 0.91180 1.21174 1.00671 0.97649 0.93317 1.21508 1.02557 0.97946 0.92141 1.21438 1.02082 0.98994 0.91416 1.24477 1.00845 0.93405 0.97002 0.84411 1.88889 1.60265 1.52568 1.10753 1.24738 1.07791 0.97509 0.91673 1.22741 0.86084 0.90660 0.98614 0.83180 1.45253 1.24338 1.38616 1.30387 1.16237 0.82601 0.80890 0.81024 1.90962 1.32299 1.50931 1.78790 1.45406 1.21559 1.41098 1.30665 1.22915 0.94189 0.89584 0.91800 0.83337 0.91706 0.94409 0.91602 0.91623 0.91073 0.91642 0.89318 0.88363 0.92704 0.94305 0.92393 0.89719 0.88736 0.92632 0.86747 0.84775 0.72065 0.72480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 9.65 71.98 0.69 -4.96 16 2 C 0.12 5.43 5.07 86.38 0.44 5.87 16 3 N -0.46 -23.96 2.64 -635.53 -1.68 -25.64 16 4 C -0.35 -20.67 9.39 84.04 0.79 -19.88 16 5 H 0.07 4.24 7.34 -2.91 -0.02 4.22 16 6 C 0.01 0.41 4.81 84.93 0.41 0.81 16 7 N -0.86 -44.09 8.67 21.66 0.19 -43.90 16 8 Si 0.97 42.77 29.63 68.60 2.03 44.80 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 C 0.42 21.41 7.59 87.66 0.66 22.08 16 13 O -0.64 -38.09 15.58 -3.06 -0.05 -38.14 16 14 C -0.12 -4.16 4.31 29.85 0.13 -4.03 16 15 C -0.09 -2.84 4.50 30.60 0.14 -2.71 16 16 C -0.10 -2.21 5.10 30.60 0.16 -2.05 16 17 C -0.10 -1.67 3.66 30.60 0.11 -1.56 16 18 C -0.03 -0.30 3.22 30.96 0.10 -0.20 16 19 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 20 S -0.35 -5.71 21.89 -56.49 -1.24 -6.94 16 21 C -0.07 -0.39 7.10 72.37 0.51 0.12 16 22 C 0.13 0.59 4.16 45.47 0.19 0.78 16 23 H 0.15 -0.42 8.14 -2.39 -0.02 -0.44 16 24 N -0.72 -8.73 5.94 -455.41 -2.71 -11.44 16 25 C 0.69 15.01 8.92 179.54 1.60 16.61 16 26 O -0.65 -21.65 18.05 -3.99 -0.07 -21.72 16 27 N -0.73 -11.12 4.87 -455.02 -2.22 -13.33 16 28 C 0.12 0.86 4.05 45.42 0.18 1.05 16 29 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.06 3.06 6.10 -2.38 -0.01 3.04 16 31 H 0.04 1.37 6.54 -2.39 -0.02 1.35 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.07 2.41 6.68 -2.39 -0.02 2.40 16 34 H 0.07 3.39 6.07 -2.39 -0.01 3.37 16 35 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 36 H 0.09 2.89 7.41 -2.39 -0.02 2.87 16 37 H 0.10 3.12 6.49 -2.39 -0.02 3.10 16 38 H 0.05 1.83 8.10 -2.39 -0.02 1.82 16 39 H 0.04 1.41 8.10 -2.39 -0.02 1.39 16 40 H 0.06 1.35 7.43 -2.39 -0.02 1.33 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 1.23 7.25 -2.39 -0.02 1.21 16 44 H 0.11 0.67 8.07 -2.38 -0.02 0.65 16 45 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.44 4.07 8.96 -92.71 -0.83 3.24 16 47 H 0.43 6.82 7.96 -92.70 -0.74 6.08 16 Total: -1.00 -84.04 377.91 -0.18 -84.22 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -0.56 Total: 20.15 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.12 Total: 11.94 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -6.41 Total: -94.31 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: -0.12 Total: -59.86 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -1.24 Total: -6.94 kcal Total: -84.04 -0.18 -84.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.296 kcal (2) G-P(sol) polarization free energy of solvation -84.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds