Wall clock time and date at job start Wed Apr 1 2020 00:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47112 * 2 1 4 4 C 1.34769 * 120.00235 * 90.28962 * 3 2 1 5 5 C 1.50700 * 120.00107 * 354.44218 * 4 3 2 6 6 O 1.21292 * 120.00307 * 174.44652 * 4 3 2 7 7 C 1.39002 * 119.99818 * 270.01545 * 3 2 1 8 8 N 1.29623 * 124.94667 * 185.23052 * 7 3 2 9 9 C 1.31987 * 116.92276 * 179.77082 * 8 7 3 10 10 C 1.50695 * 122.72142 * 180.24505 * 9 8 7 11 11 N 1.46896 * 109.47589 * 275.29337 * 10 9 8 12 12 C 1.46897 * 111.00117 * 302.27664 * 11 10 9 13 13 C 1.50697 * 109.47339 * 170.84431 * 12 11 10 14 14 H 1.08001 * 119.99971 * 4.34428 * 13 12 11 15 15 C 1.37881 * 120.00145 * 184.34617 * 13 12 11 16 16 N 1.31516 * 120.00128 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99790 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47005 * 90.00136 * 17 15 13 19 19 H 1.48504 * 109.47180 * 209.99986 * 17 15 13 20 20 H 1.48499 * 109.47431 * 330.00078 * 17 15 13 21 21 C 1.46900 * 111.00296 * 178.31800 * 11 10 9 22 22 C 1.52998 * 109.47300 * 282.26139 * 21 11 10 23 23 O 1.42906 * 109.46888 * 65.73030 * 22 21 11 24 24 C 1.42899 * 113.99962 * 180.02562 * 23 22 21 25 25 C 1.33443 * 114.56343 * 0.51707 * 9 8 7 26 26 S 1.70968 * 124.94439 * 5.53432 * 7 3 2 27 27 H 1.09000 * 109.46849 * 299.99915 * 1 2 3 28 28 H 1.08997 * 109.47543 * 59.99792 * 1 2 3 29 29 H 1.09000 * 109.47023 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46849 * 240.00085 * 2 1 3 31 31 H 1.09000 * 109.46933 * 119.99780 * 2 1 3 32 32 H 1.08999 * 109.47104 * 354.00925 * 5 4 3 33 33 H 1.09002 * 109.46935 * 114.00356 * 5 4 3 34 34 H 1.09000 * 109.47318 * 234.00751 * 5 4 3 35 35 H 1.09007 * 109.47226 * 35.29764 * 10 9 8 36 36 H 1.09000 * 109.47371 * 155.28708 * 10 9 8 37 37 H 1.09001 * 109.46913 * 290.84529 * 12 11 10 38 38 H 1.08997 * 109.47320 * 50.84247 * 12 11 10 39 39 H 0.96996 * 120.00014 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.46913 * 42.26617 * 21 11 10 41 41 H 1.09000 * 109.46801 * 162.26492 * 21 11 10 42 42 H 1.08996 * 109.47048 * 185.72690 * 22 21 11 43 43 H 1.09000 * 109.47480 * 305.72785 * 22 21 11 44 44 H 1.09004 * 109.46787 * 299.99332 * 24 23 22 45 45 H 1.09003 * 109.47242 * 59.99504 * 24 23 22 46 46 H 1.08997 * 109.47222 * 179.97438 * 24 23 22 47 47 H 1.08003 * 125.97004 * 179.72801 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2485 2.0145 1.1671 5 6 1.8862 1.3491 2.4698 6 8 2.7473 3.1202 1.1691 7 6 2.2497 2.0365 -1.2038 8 7 2.7702 3.2181 -1.3179 9 6 2.9232 3.6882 -2.5417 10 6 3.5189 5.0430 -2.8253 11 7 2.4708 6.0681 -2.7322 12 6 1.3717 5.7834 -3.6644 13 6 0.2225 6.7178 -3.3864 14 1 0.3262 7.4954 -2.6441 15 6 -0.9614 6.5798 -4.0795 16 7 -1.9645 7.3948 -3.8365 17 14 -1.1405 5.2351 -5.3637 18 1 -1.6618 4.0024 -4.7203 19 1 -2.0861 5.6807 -6.4185 20 1 0.1839 4.9531 -5.9733 21 6 3.0238 7.4091 -2.9641 22 6 3.7479 7.8871 -1.7040 23 8 4.8887 7.0596 -1.4673 24 6 5.6392 7.4225 -0.3066 25 6 2.5024 2.8689 -3.5072 26 16 1.8824 1.4043 -2.7493 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3577 0.4176 2.2673 33 1 2.7943 1.1364 3.0340 34 1 1.2446 2.0121 3.0503 35 1 4.3011 5.2559 -2.0966 36 1 3.9455 5.0496 -3.8283 37 1 1.7173 5.9270 -4.6882 38 1 1.0419 4.7528 -3.5334 39 1 -2.7972 7.2980 -4.3244 40 1 3.7274 7.3731 -3.7959 41 1 2.2147 8.0996 -3.2022 42 1 4.0699 8.9196 -1.8395 43 1 3.0717 7.8264 -0.8512 44 1 6.0005 8.4455 -0.4128 45 1 5.0020 7.3518 0.5749 46 1 6.4874 6.7469 -0.1966 47 1 2.5360 3.0687 -4.5681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072690679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:35 Heat of formation + Delta-G solvation = -0.954900 kcal Electronic energy + Delta-G solvation = -28799.133989 eV Core-core repulsion = 24917.624189 eV Total energy + Delta-G solvation = -3881.509801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57984 -39.09016 -37.71252 -36.42489 -35.83204 -32.46311 -31.71299 -30.35237 -29.77616 -28.88763 -27.71157 -26.08580 -24.99552 -23.89966 -23.73858 -22.05024 -20.60189 -19.66953 -18.98092 -17.84574 -16.88255 -16.71171 -16.26886 -16.00420 -15.85215 -15.58151 -14.92891 -14.50796 -14.42256 -14.27669 -14.14304 -13.97440 -13.57141 -13.42977 -13.04450 -12.96215 -12.71305 -12.50942 -12.33153 -12.19146 -12.06532 -11.84260 -11.63187 -11.56696 -11.35819 -10.95687 -10.95125 -10.65074 -10.52240 -10.28889 -10.10837 -9.95604 -9.78442 -9.21865 -9.12580 -8.97893 -8.90182 -8.52025 -7.87358 -7.21470 -6.01038 -3.96651 1.04245 1.27830 1.93834 2.58473 2.60823 3.29504 3.33639 3.37023 3.38636 4.24745 4.26670 4.45494 4.46598 4.75282 4.79848 4.87864 4.99696 5.04691 5.20628 5.32412 5.33014 5.43905 5.51762 5.56895 5.58454 5.65624 5.75005 5.86647 5.88172 5.91564 5.93070 6.00904 6.03602 6.15990 6.35087 6.45372 6.61724 6.77352 6.94257 7.01397 7.07792 7.60121 7.67647 8.00162 8.04208 8.14715 8.31787 8.73002 9.07445 9.61583 11.12237 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008049 B = 0.005144 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3477.898171 B = 5441.765085 C = 7489.508139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.098 3.902 3 N -0.528 5.528 4 C 0.501 3.499 5 C -0.171 4.171 6 O -0.466 6.466 7 C 0.267 3.733 8 N -0.446 5.446 9 C 0.124 3.876 10 C 0.122 3.878 11 N -0.513 5.513 12 C 0.156 3.844 13 C -0.504 4.504 14 H 0.080 0.920 15 C 0.069 3.931 16 N -0.901 5.901 17 Si 0.870 3.130 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.065 3.935 22 C 0.068 3.932 23 O -0.387 6.387 24 C 0.035 3.965 25 C -0.272 4.272 26 S 0.090 5.910 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.035 0.965 37 H -0.016 1.016 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.030 0.970 41 H 0.106 0.894 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.032 0.968 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.192 -16.266 8.038 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.024 4.024 3 N -0.261 5.261 4 C 0.287 3.713 5 C -0.231 4.231 6 O -0.334 6.334 7 C -0.101 4.101 8 N -0.166 5.166 9 C -0.008 4.008 10 C -0.009 4.009 11 N -0.238 5.238 12 C 0.030 3.970 13 C -0.543 4.543 14 H 0.098 0.902 15 C -0.132 4.132 16 N -0.541 5.541 17 Si 0.697 3.303 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.063 4.063 22 C -0.009 4.009 23 O -0.306 6.306 24 C -0.062 4.062 25 C -0.412 4.412 26 S 0.340 5.660 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.053 0.947 37 H 0.002 0.998 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.124 0.876 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 9.843 -16.422 8.563 20.973 hybrid contribution 0.094 0.233 -1.554 1.574 sum 9.936 -16.189 7.008 20.247 Atomic orbital electron populations 1.22302 0.94410 1.03156 1.03901 1.21906 0.95796 0.80202 1.04520 1.45377 1.64056 1.14220 1.02430 1.21136 0.78854 0.86507 0.84822 1.22022 1.04447 1.02346 0.94260 1.90900 1.38005 1.18462 1.86018 1.23653 1.01631 0.93649 0.91185 1.66313 1.17408 1.08568 1.24351 1.20079 0.98011 0.97482 0.85199 1.20897 0.94562 0.85412 1.00007 1.61866 1.08148 0.99834 1.53922 1.20273 0.90062 0.97762 0.88888 1.21052 0.95697 1.15505 1.22001 0.90166 1.24869 0.95707 0.95850 0.96790 1.69894 1.03939 1.38029 1.42205 0.86930 0.78279 0.83011 0.82062 1.20171 1.21237 1.19201 1.22110 0.97719 0.92591 0.93891 1.22720 0.86704 0.92130 0.99358 1.87866 1.40995 1.56498 1.45237 1.22621 0.95726 0.99134 0.88742 1.26637 1.12821 0.97050 1.04702 1.83480 1.62718 1.21206 0.98589 0.91511 0.91400 0.90463 0.89531 0.88205 0.89955 0.88480 0.88206 0.87203 0.94693 0.99804 0.95264 0.92787 0.95210 0.87557 0.93910 0.92315 0.94915 0.94206 0.90497 0.80829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 10.04 37.16 0.37 -1.02 16 2 C 0.10 0.80 5.33 -4.04 -0.02 0.77 16 3 N -0.53 -7.21 2.67 -117.40 -0.31 -7.53 16 4 C 0.50 7.26 7.73 -10.99 -0.08 7.18 16 5 C -0.17 -1.40 9.83 36.01 0.35 -1.05 16 6 O -0.47 -9.38 15.75 5.55 0.09 -9.29 16 7 C 0.27 4.62 7.66 -87.35 -0.67 3.95 16 8 N -0.45 -9.38 8.65 -11.28 -0.10 -9.48 16 9 C 0.12 2.53 5.30 -84.20 -0.45 2.08 16 10 C 0.12 2.49 5.17 -4.98 -0.03 2.47 16 11 N -0.51 -11.81 4.48 -237.53 -1.06 -12.88 16 12 C 0.16 3.98 3.48 -4.98 -0.02 3.96 16 13 C -0.50 -14.75 8.85 -34.44 -0.30 -15.06 16 14 H 0.08 2.54 7.36 -52.49 -0.39 2.15 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 17 Si 0.87 22.04 27.38 -169.99 -4.65 17.38 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.27 -6.47 6.67 56.52 0.38 -6.09 16 21 C 0.07 1.33 5.36 -3.82 -0.02 1.31 16 22 C 0.07 1.22 6.27 37.16 0.23 1.45 16 23 O -0.39 -6.85 7.90 -35.23 -0.28 -7.13 16 24 C 0.03 0.48 11.01 101.05 1.11 1.60 16 25 C -0.27 -4.88 9.54 29.06 0.28 -4.60 16 26 S 0.09 1.34 21.78 -107.50 -2.34 -1.00 16 27 H 0.07 0.52 7.60 -51.93 -0.39 0.12 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.64 7.18 -51.93 -0.37 0.27 16 31 H 0.10 0.48 6.32 -51.93 -0.33 0.15 16 32 H 0.08 0.43 5.08 -51.93 -0.26 0.16 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.11 2.29 5.45 -51.93 -0.28 2.01 16 36 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 37 H -0.02 -0.40 7.49 -51.93 -0.39 -0.78 16 38 H 0.03 0.77 4.89 -51.93 -0.25 0.51 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.03 0.57 7.95 -51.93 -0.41 0.16 16 41 H 0.11 2.33 6.43 -51.93 -0.33 2.00 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.17 2.85 8.06 -52.48 -0.42 2.43 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -37.95 387.93 -8.60 -46.55 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.22 Total: -0.13 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 0.66 Total: 4.99 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.70 Total: -57.22 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.19 Total: -16.42 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.65 Total: 17.38 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.34 Total: -1.00 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.95 -8.60 -46.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.600 kcal (2) G-P(sol) polarization free energy of solvation -37.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds