Wall clock time and date at job start Wed Apr 1 2020 00:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.47112 * 2 1 4 4 C 1.34769 * 120.00235 * 90.28962 * 3 2 1 5 5 C 1.50700 * 120.00107 * 354.44218 * 4 3 2 6 6 O 1.21292 * 120.00307 * 174.44652 * 4 3 2 7 7 C 1.39002 * 119.99818 * 270.01545 * 3 2 1 8 8 N 1.29623 * 124.94667 * 185.23052 * 7 3 2 9 9 C 1.31987 * 116.92276 * 179.77082 * 8 7 3 10 10 C 1.50695 * 122.72142 * 180.24505 * 9 8 7 11 11 N 1.46896 * 109.47589 * 275.29337 * 10 9 8 12 12 C 1.46897 * 111.00117 * 302.27664 * 11 10 9 13 13 C 1.50697 * 109.47339 * 170.84431 * 12 11 10 14 14 H 1.08001 * 119.99971 * 4.34428 * 13 12 11 15 15 C 1.37881 * 120.00145 * 184.34617 * 13 12 11 16 16 N 1.31516 * 120.00128 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99790 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47005 * 90.00136 * 17 15 13 19 19 H 1.48504 * 109.47180 * 209.99986 * 17 15 13 20 20 H 1.48499 * 109.47431 * 330.00078 * 17 15 13 21 21 C 1.46900 * 111.00296 * 178.31800 * 11 10 9 22 22 C 1.52998 * 109.47300 * 282.26139 * 21 11 10 23 23 O 1.42906 * 109.46888 * 65.73030 * 22 21 11 24 24 C 1.42899 * 113.99962 * 180.02562 * 23 22 21 25 25 C 1.33443 * 114.56343 * 0.51707 * 9 8 7 26 26 S 1.70968 * 124.94439 * 5.53432 * 7 3 2 27 27 H 1.09000 * 109.46849 * 299.99915 * 1 2 3 28 28 H 1.08997 * 109.47543 * 59.99792 * 1 2 3 29 29 H 1.09000 * 109.47023 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46849 * 240.00085 * 2 1 3 31 31 H 1.09000 * 109.46933 * 119.99780 * 2 1 3 32 32 H 1.08999 * 109.47104 * 354.00925 * 5 4 3 33 33 H 1.09002 * 109.46935 * 114.00356 * 5 4 3 34 34 H 1.09000 * 109.47318 * 234.00751 * 5 4 3 35 35 H 1.09007 * 109.47226 * 35.29764 * 10 9 8 36 36 H 1.09000 * 109.47371 * 155.28708 * 10 9 8 37 37 H 1.09001 * 109.46913 * 290.84529 * 12 11 10 38 38 H 1.08997 * 109.47320 * 50.84247 * 12 11 10 39 39 H 0.96996 * 120.00014 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.46913 * 42.26617 * 21 11 10 41 41 H 1.09000 * 109.46801 * 162.26492 * 21 11 10 42 42 H 1.08996 * 109.47048 * 185.72690 * 22 21 11 43 43 H 1.09000 * 109.47480 * 305.72785 * 22 21 11 44 44 H 1.09004 * 109.46787 * 299.99332 * 24 23 22 45 45 H 1.09003 * 109.47242 * 59.99504 * 24 23 22 46 46 H 1.08997 * 109.47222 * 179.97438 * 24 23 22 47 47 H 1.08003 * 125.97004 * 179.72801 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2485 2.0145 1.1671 5 6 1.8862 1.3491 2.4698 6 8 2.7473 3.1202 1.1691 7 6 2.2497 2.0365 -1.2038 8 7 2.7702 3.2181 -1.3179 9 6 2.9232 3.6882 -2.5417 10 6 3.5189 5.0430 -2.8253 11 7 2.4708 6.0681 -2.7322 12 6 1.3717 5.7834 -3.6644 13 6 0.2225 6.7178 -3.3864 14 1 0.3262 7.4954 -2.6441 15 6 -0.9614 6.5798 -4.0795 16 7 -1.9645 7.3948 -3.8365 17 14 -1.1405 5.2351 -5.3637 18 1 -1.6618 4.0024 -4.7203 19 1 -2.0861 5.6807 -6.4185 20 1 0.1839 4.9531 -5.9733 21 6 3.0238 7.4091 -2.9641 22 6 3.7479 7.8871 -1.7040 23 8 4.8887 7.0596 -1.4673 24 6 5.6392 7.4225 -0.3066 25 6 2.5024 2.8689 -3.5072 26 16 1.8824 1.4043 -2.7493 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3577 0.4176 2.2673 33 1 2.7943 1.1364 3.0340 34 1 1.2446 2.0121 3.0503 35 1 4.3011 5.2559 -2.0966 36 1 3.9455 5.0496 -3.8283 37 1 1.7173 5.9270 -4.6882 38 1 1.0419 4.7528 -3.5334 39 1 -2.7972 7.2980 -4.3244 40 1 3.7274 7.3731 -3.7959 41 1 2.2147 8.0996 -3.2022 42 1 4.0699 8.9196 -1.8395 43 1 3.0717 7.8264 -0.8512 44 1 6.0005 8.4455 -0.4128 45 1 5.0020 7.3518 0.5749 46 1 6.4874 6.7469 -0.1966 47 1 2.5360 3.0687 -4.5681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072690679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:33 Heat of formation + Delta-G solvation = -29.071427 kcal Electronic energy + Delta-G solvation = -28800.353214 eV Core-core repulsion = 24917.624189 eV Total energy + Delta-G solvation = -3882.729025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73891 -40.43527 -39.15486 -37.69991 -37.24640 -34.67187 -32.82376 -31.31107 -31.07155 -30.46676 -29.28306 -27.41238 -26.47419 -25.18779 -24.59694 -23.88350 -22.10513 -21.15305 -20.16030 -19.06856 -18.96823 -17.91586 -17.43263 -17.36493 -17.07840 -16.96495 -16.42168 -16.27272 -15.90032 -15.59702 -15.19008 -15.09417 -14.88066 -14.82346 -14.53460 -14.27225 -13.96467 -13.92688 -13.59343 -13.38396 -13.16556 -13.06138 -12.86633 -12.75808 -12.68268 -12.50660 -12.36743 -12.18402 -12.13041 -11.88659 -11.68481 -11.45004 -11.29487 -11.27143 -10.79217 -10.49488 -10.27032 -10.17270 -9.15898 -8.94562 -8.29745 -6.31835 -0.27011 0.05320 0.62516 1.29171 1.31033 1.41907 1.45024 1.63735 2.01236 2.32062 2.91715 3.03291 3.27025 3.34708 3.68875 3.88756 4.13529 4.14064 4.22287 4.28554 4.29323 4.37040 4.42126 4.48584 4.54821 4.57909 4.60529 4.61179 4.68153 4.76002 4.80227 4.81222 4.84607 4.87602 4.99230 5.05352 5.07165 5.22744 5.32721 5.34454 5.52959 5.96760 6.01746 6.26644 6.38129 6.64757 6.72554 6.87014 7.11947 7.30717 8.86906 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008049 B = 0.005144 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3477.898171 B = 5441.765085 C = 7489.508139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 N -0.528 5.528 4 C 0.491 3.509 5 C -0.159 4.159 6 O -0.537 6.537 7 C 0.247 3.753 8 N -0.499 5.499 9 C 0.096 3.904 10 C 0.128 3.872 11 N -0.535 5.535 12 C 0.174 3.826 13 C -0.514 4.514 14 H 0.037 0.963 15 C 0.011 3.989 16 N -0.946 5.946 17 Si 0.937 3.063 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.246 1.246 21 C 0.066 3.934 22 C 0.078 3.922 23 O -0.403 6.403 24 C 0.030 3.970 25 C -0.290 4.290 26 S 0.174 5.826 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.049 0.951 37 H -0.012 1.012 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.033 0.967 44 H 0.058 0.942 45 H 0.030 0.970 46 H 0.093 0.907 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 -19.974 7.743 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.033 4.033 3 N -0.259 5.259 4 C 0.280 3.720 5 C -0.218 4.218 6 O -0.409 6.409 7 C -0.121 4.121 8 N -0.220 5.220 9 C -0.036 4.036 10 C -0.002 4.002 11 N -0.260 5.260 12 C 0.048 3.952 13 C -0.552 4.552 14 H 0.055 0.945 15 C -0.187 4.187 16 N -0.587 5.587 17 Si 0.760 3.240 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.169 1.169 21 C -0.062 4.062 22 C 0.002 3.998 23 O -0.323 6.323 24 C -0.066 4.066 25 C -0.431 4.431 26 S 0.424 5.576 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.160 0.840 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.006 0.994 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.112 0.888 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 10.336 -20.188 8.280 24.144 hybrid contribution -0.050 1.354 -1.340 1.905 sum 10.286 -18.835 6.940 22.554 Atomic orbital electron populations 1.22325 0.93941 1.04909 1.02486 1.22417 0.96146 0.77552 1.07180 1.45900 1.63063 1.15826 1.01160 1.22397 0.77127 0.85879 0.86644 1.22092 1.05789 1.03260 0.90643 1.90868 1.41234 1.21697 1.87129 1.24217 1.00766 0.93405 0.93664 1.66294 1.19680 1.10852 1.25213 1.20057 0.99790 0.97822 0.85972 1.20799 0.93568 0.85333 1.00451 1.61777 1.09056 1.01529 1.53588 1.19946 0.89672 0.96226 0.89405 1.21252 0.97581 1.15333 1.21031 0.94511 1.25787 0.95087 0.98529 0.99250 1.70047 1.04720 1.40154 1.43813 0.85852 0.79399 0.79586 0.79142 1.19243 1.20268 1.16942 1.22067 0.97319 0.91069 0.95779 1.22508 0.86601 0.93593 0.97133 1.87821 1.40782 1.57008 1.46695 1.22813 0.95551 1.01132 0.87074 1.26947 1.12349 0.98546 1.05250 1.83012 1.60734 1.18193 0.95613 0.91508 0.94302 0.87050 0.88505 0.83979 0.86224 0.86440 0.88080 0.88043 0.93259 0.99415 0.95587 0.92462 0.93626 0.90077 0.90850 0.94829 0.92392 0.95139 0.88813 0.79555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 10.04 71.98 0.72 -1.46 16 2 C 0.09 1.10 5.33 86.38 0.46 1.56 16 3 N -0.53 -13.68 2.67 -643.73 -1.72 -15.40 16 4 C 0.49 13.97 7.73 87.66 0.68 14.64 16 5 C -0.16 -2.18 9.83 71.24 0.70 -1.48 16 6 O -0.54 -22.50 15.75 -3.07 -0.05 -22.55 16 7 C 0.25 8.45 7.66 179.20 1.37 9.82 16 8 N -0.50 -21.50 8.65 -189.60 -1.64 -23.14 16 9 C 0.10 3.95 5.30 41.45 0.22 4.17 16 10 C 0.13 5.37 5.17 85.56 0.44 5.82 16 11 N -0.53 -25.51 4.48 -905.40 -4.05 -29.56 16 12 C 0.17 9.03 3.48 85.56 0.30 9.33 16 13 C -0.51 -31.30 8.85 25.60 0.23 -31.07 16 14 H 0.04 2.49 7.36 -2.91 -0.02 2.47 16 15 C 0.01 0.64 5.47 84.66 0.46 1.11 16 16 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 17 Si 0.94 45.26 27.38 68.60 1.88 47.14 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.25 -10.96 6.67 99.48 0.66 -10.30 16 21 C 0.07 2.78 5.36 86.30 0.46 3.24 16 22 C 0.08 2.91 6.27 71.98 0.45 3.37 16 23 O -0.40 -14.48 7.90 -148.98 -1.18 -15.66 16 24 C 0.03 0.84 11.01 113.37 1.25 2.09 16 25 C -0.29 -10.12 9.54 66.73 0.64 -9.48 16 26 S 0.17 4.83 21.78 -56.49 -1.23 3.60 16 27 H 0.07 0.83 7.60 -2.39 -0.02 0.81 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 1.05 7.18 -2.39 -0.02 1.04 16 31 H 0.14 0.62 6.32 -2.39 -0.02 0.61 16 32 H 0.12 0.68 5.08 -2.39 -0.01 0.67 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 35 H 0.10 4.39 5.45 -2.38 -0.01 4.37 16 36 H 0.05 1.87 8.06 -2.39 -0.02 1.85 16 37 H -0.01 -0.59 7.49 -2.39 -0.02 -0.61 16 38 H 0.03 1.37 4.89 -2.39 -0.01 1.35 16 39 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.05 1.76 7.95 -2.39 -0.02 1.74 16 41 H 0.08 3.80 6.43 -2.39 -0.02 3.78 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.19 5.79 8.06 -2.91 -0.02 5.76 16 Total: -1.00 -89.46 387.93 1.62 -87.84 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.93 Total: 16.59 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 8.38 Total: 11.65 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -7.12 Total: -128.62 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.23 Total: -38.21 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.23 Total: 3.60 kcal Total: -89.46 1.62 -87.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.770 kcal (2) G-P(sol) polarization free energy of solvation -89.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds