Wall clock time and date at job start Wed Apr 1 2020 01:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46896 * 109.47153 * 2 1 4 4 C 1.46898 * 111.00710 * 60.11498 * 3 2 1 5 5 C 1.50697 * 109.46980 * 66.04653 * 4 3 2 6 6 H 1.08000 * 120.00306 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00213 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99688 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00314 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46810 * 90.00296 * 9 7 5 11 11 H 1.48498 * 109.47122 * 209.99948 * 9 7 5 12 12 H 1.48494 * 109.47065 * 330.00422 * 9 7 5 13 13 C 1.46905 * 110.99717 * 296.16015 * 3 2 1 14 14 C 1.50698 * 109.47047 * 294.37145 * 13 3 2 15 15 C 1.33448 * 122.71652 * 95.33661 * 14 13 3 16 16 S 1.76171 * 108.06098 * 179.97438 * 15 14 13 17 17 C 1.70959 * 90.34266 * 0.27486 * 16 15 14 18 18 N 1.39003 * 124.94670 * 179.87139 * 17 16 15 19 19 C 1.46497 * 119.99593 * 5.55926 * 18 17 16 20 20 C 1.52996 * 109.47579 * 85.14007 * 19 18 17 21 21 O 1.42906 * 109.47216 * 64.99733 * 20 19 18 22 22 C 1.42896 * 114.00012 * 180.02562 * 21 20 19 23 23 C 1.34778 * 120.00266 * 185.55254 * 18 17 16 24 24 C 1.50698 * 120.00171 * 184.93022 * 23 18 17 25 25 O 1.21283 * 119.99614 * 4.94015 * 23 18 17 26 26 N 1.29627 * 110.11189 * 359.83934 * 17 16 15 27 27 H 1.08998 * 109.47652 * 301.43324 * 1 2 3 28 28 H 1.09001 * 109.46807 * 61.43982 * 1 2 3 29 29 H 1.09006 * 109.47291 * 181.43560 * 1 2 3 30 30 H 1.08992 * 109.47917 * 239.99250 * 2 1 3 31 31 H 1.09003 * 109.46946 * 119.99244 * 2 1 3 32 32 H 1.08995 * 109.47395 * 186.04869 * 4 3 2 33 33 H 1.09004 * 109.46577 * 306.04770 * 4 3 2 34 34 H 0.97000 * 120.00316 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46992 * 54.37045 * 13 3 2 36 36 H 1.09006 * 109.47250 * 174.37359 * 13 3 2 37 37 H 1.08000 * 125.96702 * 0.03969 * 15 14 13 38 38 H 1.09004 * 109.46918 * 205.13809 * 19 18 17 39 39 H 1.08994 * 109.47528 * 325.13530 * 19 18 17 40 40 H 1.08995 * 109.47357 * 184.99768 * 20 19 18 41 41 H 1.09002 * 109.47184 * 304.99778 * 20 19 18 42 42 H 1.08997 * 109.46985 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47002 * 299.99921 * 22 21 20 44 44 H 1.08998 * 109.47484 * 59.99280 * 22 21 20 45 45 H 1.09006 * 109.46777 * 94.50078 * 24 23 18 46 46 H 1.08997 * 109.47626 * 214.50275 * 24 23 18 47 47 H 1.09005 * 109.47000 * 334.50594 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5509 2.1092 1.1890 5 6 2.1754 1.5082 2.4218 6 1 2.8524 0.6716 2.3312 7 6 1.8817 2.0257 3.6656 8 7 1.0562 3.0434 3.7761 9 14 2.6552 1.2803 5.1938 10 1 3.9385 1.9685 5.4849 11 1 1.7329 1.4448 6.3459 12 1 2.9093 -0.1648 4.9654 13 6 1.6250 2.0828 -1.2310 14 6 2.3154 1.4490 -2.4111 15 6 1.7403 0.5091 -3.1639 16 16 2.8805 0.0456 -4.4243 17 6 4.0259 1.1568 -3.8112 18 7 5.2932 1.3682 -4.3418 19 6 5.6878 0.6999 -5.5843 20 6 5.2125 1.5261 -6.7811 21 8 5.8946 2.7818 -6.7941 22 6 5.5211 3.6348 -7.8780 23 6 6.1587 2.1882 -3.7133 24 6 7.4900 2.5050 -4.3443 25 8 5.8662 2.6708 -2.6398 26 7 3.5404 1.7740 -2.7799 27 1 -0.3634 0.5359 0.8768 28 1 -0.3633 0.4913 -0.9026 29 1 -0.3634 -1.0274 0.0257 30 1 1.8934 -0.5139 -0.8898 31 1 1.8932 -0.5137 0.8901 32 1 1.8365 3.1582 1.1115 33 1 0.4657 2.0322 1.2570 34 1 0.8492 3.4073 4.6511 35 1 0.5450 2.0099 -1.3597 36 1 1.9127 3.1319 -1.1621 37 1 0.7487 0.1043 -3.0253 38 1 6.7732 0.6047 -5.6166 39 1 5.2349 -0.2907 -5.6238 40 1 5.4273 0.9864 -7.7034 41 1 4.1389 1.6966 -6.7015 42 1 6.0830 4.5668 -7.8170 43 1 5.7420 3.1390 -8.8233 44 1 4.4539 3.8490 -7.8208 45 1 7.4123 3.4338 -4.9095 46 1 8.2442 2.6159 -3.5652 47 1 7.7765 1.6946 -5.0147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:27 Heat of formation + Delta-G solvation = -1.112456 kcal Electronic energy + Delta-G solvation = -28179.478060 eV Core-core repulsion = 24297.961427 eV Total energy + Delta-G solvation = -3881.516633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.68976 -39.22356 -38.22805 -36.85771 -35.83168 -32.56560 -31.32313 -30.19619 -29.59018 -29.03167 -27.22271 -26.74767 -25.20122 -24.08919 -23.62675 -22.99624 -20.67474 -19.26239 -19.05204 -17.97584 -17.10197 -16.81105 -16.39409 -16.31244 -16.09183 -15.68632 -15.13516 -14.79673 -14.74090 -14.23806 -14.17670 -13.79545 -13.70183 -13.40586 -13.24969 -12.92738 -12.75916 -12.67105 -12.36490 -12.17533 -12.02155 -11.79935 -11.62297 -11.51384 -11.19143 -11.01146 -10.83804 -10.56246 -10.49524 -10.22553 -10.17421 -10.08823 -9.96235 -9.69527 -9.17891 -9.05831 -9.02117 -8.32916 -8.00160 -7.04983 -5.92547 -3.92304 0.91582 1.12529 1.77849 2.48503 2.61937 3.19776 3.30730 3.39830 3.45246 3.49298 4.27646 4.36248 4.45535 4.52622 4.69430 4.76230 4.92364 4.94598 4.95515 5.10309 5.21232 5.22806 5.29467 5.41826 5.42937 5.44193 5.66887 5.75428 5.83958 5.93089 5.97814 6.09060 6.22627 6.25122 6.44805 6.54573 6.63522 6.76371 6.94814 6.98180 7.42906 7.50052 7.90912 8.01483 8.19483 8.24852 8.33290 8.66259 9.14731 9.70786 11.18438 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.002869 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.834660 B = 9756.739374 C =10697.085169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 N -0.524 5.524 4 C 0.191 3.809 5 C -0.500 4.500 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.121 3.879 14 C 0.129 3.871 15 C -0.275 4.275 16 S 0.076 5.924 17 C 0.273 3.727 18 N -0.526 5.526 19 C 0.102 3.898 20 C 0.039 3.961 21 O -0.385 6.385 22 C 0.032 3.968 23 C 0.508 3.492 24 C -0.160 4.160 25 O -0.465 6.465 26 N -0.450 5.450 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.001 0.999 34 H 0.260 0.740 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.176 0.824 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.753 -5.859 -28.460 30.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.070 4.070 3 N -0.247 5.247 4 C 0.066 3.934 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.010 4.010 14 C -0.003 4.003 15 C -0.415 4.415 16 S 0.326 5.674 17 C -0.095 4.095 18 N -0.258 5.258 19 C -0.020 4.020 20 C -0.039 4.039 21 O -0.304 6.304 22 C -0.064 4.064 23 C 0.294 3.706 24 C -0.219 4.219 25 O -0.332 6.332 26 N -0.170 5.170 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.193 0.807 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.121 0.879 46 H 0.110 0.890 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.585 -5.683 -28.103 29.929 hybrid contribution -1.199 -0.068 1.170 1.677 sum 7.386 -5.751 -26.932 28.512 Atomic orbital electron populations 1.22398 0.99457 1.00966 1.01921 1.21997 0.91987 0.91665 1.01313 1.62265 1.59442 1.01772 1.01263 1.19798 0.94054 0.93921 0.85585 1.21138 1.26449 1.16076 0.90183 0.92012 1.24958 0.95419 0.95207 0.99031 1.69958 1.35566 1.24567 1.23943 0.86519 0.79049 0.79532 0.82438 1.20664 1.21416 1.19949 1.20634 0.94971 0.98414 0.86954 1.20234 0.88355 0.94632 0.97069 1.26563 1.05612 1.07552 1.01808 1.83414 1.08633 1.41756 1.33646 1.23745 0.92177 0.97770 0.95806 1.45302 1.09689 1.46319 1.24474 1.22036 1.03472 0.95378 0.81140 1.23035 0.97185 0.85868 0.97839 1.87895 1.65127 1.27786 1.49551 1.22750 1.00205 0.94454 0.89006 1.21183 0.86210 0.77919 0.85246 1.21940 0.93127 1.04465 1.02398 1.90932 1.75875 1.46946 1.19459 1.66342 1.11905 1.26948 1.11805 0.90986 0.93911 0.93471 0.93121 0.90211 0.95232 0.98157 0.93053 0.93591 0.89665 0.80716 0.86859 0.88178 0.91271 0.92378 0.89415 0.93956 0.93994 0.87859 0.88981 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 9.25 37.15 0.34 -3.11 16 2 C 0.06 1.22 5.61 -3.83 -0.02 1.20 16 3 N -0.52 -12.33 4.70 -237.52 -1.12 -13.44 16 4 C 0.19 5.21 4.48 -4.98 -0.02 5.19 16 5 C -0.50 -14.71 8.51 -34.44 -0.29 -15.01 16 6 H 0.06 1.83 7.10 -52.49 -0.37 1.46 16 7 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 9 Si 0.90 22.65 29.54 -169.99 -5.02 17.63 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 13 C 0.12 2.47 5.22 -4.97 -0.03 2.45 16 14 C 0.13 2.38 5.55 -84.20 -0.47 1.91 16 15 C -0.28 -4.05 9.78 29.06 0.28 -3.77 16 16 S 0.08 0.90 21.76 -107.50 -2.34 -1.44 16 17 C 0.27 4.23 7.63 -87.34 -0.67 3.57 16 18 N -0.53 -6.64 2.64 -117.40 -0.31 -6.95 16 19 C 0.10 0.71 5.40 -4.05 -0.02 0.69 16 20 C 0.04 0.24 6.26 37.16 0.23 0.47 16 21 O -0.38 -2.97 8.76 -35.23 -0.31 -3.28 16 22 C 0.03 0.18 11.01 101.05 1.11 1.29 16 23 C 0.51 7.40 7.55 -10.99 -0.08 7.32 16 24 C -0.16 -1.44 8.84 36.00 0.32 -1.13 16 25 O -0.46 -9.62 15.77 5.55 0.09 -9.53 16 26 N -0.45 -8.91 8.69 -11.28 -0.10 -9.00 16 27 H 0.07 1.53 6.20 -51.93 -0.32 1.20 16 28 H 0.04 0.70 6.44 -51.93 -0.33 0.37 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.96 6.25 -51.93 -0.32 0.63 16 31 H 0.08 1.80 6.85 -51.93 -0.36 1.44 16 32 H 0.03 0.88 7.94 -51.93 -0.41 0.47 16 33 H 0.00 0.02 5.97 -51.93 -0.31 -0.29 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.05 0.85 6.13 -51.93 -0.32 0.53 16 36 H 0.09 1.86 7.94 -51.93 -0.41 1.44 16 37 H 0.18 2.22 8.06 -52.49 -0.42 1.79 16 38 H 0.11 0.52 5.64 -51.93 -0.29 0.23 16 39 H 0.10 0.54 7.15 -51.93 -0.37 0.17 16 40 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 44 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 0.89 7.55 -51.93 -0.39 0.50 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.08 0.48 5.59 -51.93 -0.29 0.19 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -37.85 387.14 -8.97 -46.82 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -7.03 Total: -2.37 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 0.59 Total: 2.59 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.79 Total: -56.25 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.22 Total: -12.81 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.34 Total: -1.44 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.85 -8.97 -46.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.705 kcal (2) G-P(sol) polarization free energy of solvation -37.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds