Wall clock time and date at job start Wed Apr 1 2020 01:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46896 * 109.47153 * 2 1 4 4 C 1.46898 * 111.00710 * 60.11498 * 3 2 1 5 5 C 1.50697 * 109.46980 * 66.04653 * 4 3 2 6 6 H 1.08000 * 120.00306 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00213 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99688 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00314 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46810 * 90.00296 * 9 7 5 11 11 H 1.48498 * 109.47122 * 209.99948 * 9 7 5 12 12 H 1.48494 * 109.47065 * 330.00422 * 9 7 5 13 13 C 1.46905 * 110.99717 * 296.16015 * 3 2 1 14 14 C 1.50698 * 109.47047 * 294.37145 * 13 3 2 15 15 C 1.33448 * 122.71652 * 95.33661 * 14 13 3 16 16 S 1.76171 * 108.06098 * 179.97438 * 15 14 13 17 17 C 1.70959 * 90.34266 * 0.27486 * 16 15 14 18 18 N 1.39003 * 124.94670 * 179.87139 * 17 16 15 19 19 C 1.46497 * 119.99593 * 5.55926 * 18 17 16 20 20 C 1.52996 * 109.47579 * 85.14007 * 19 18 17 21 21 O 1.42906 * 109.47216 * 64.99733 * 20 19 18 22 22 C 1.42896 * 114.00012 * 180.02562 * 21 20 19 23 23 C 1.34778 * 120.00266 * 185.55254 * 18 17 16 24 24 C 1.50698 * 120.00171 * 184.93022 * 23 18 17 25 25 O 1.21283 * 119.99614 * 4.94015 * 23 18 17 26 26 N 1.29627 * 110.11189 * 359.83934 * 17 16 15 27 27 H 1.08998 * 109.47652 * 301.43324 * 1 2 3 28 28 H 1.09001 * 109.46807 * 61.43982 * 1 2 3 29 29 H 1.09006 * 109.47291 * 181.43560 * 1 2 3 30 30 H 1.08992 * 109.47917 * 239.99250 * 2 1 3 31 31 H 1.09003 * 109.46946 * 119.99244 * 2 1 3 32 32 H 1.08995 * 109.47395 * 186.04869 * 4 3 2 33 33 H 1.09004 * 109.46577 * 306.04770 * 4 3 2 34 34 H 0.97000 * 120.00316 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46992 * 54.37045 * 13 3 2 36 36 H 1.09006 * 109.47250 * 174.37359 * 13 3 2 37 37 H 1.08000 * 125.96702 * 0.03969 * 15 14 13 38 38 H 1.09004 * 109.46918 * 205.13809 * 19 18 17 39 39 H 1.08994 * 109.47528 * 325.13530 * 19 18 17 40 40 H 1.08995 * 109.47357 * 184.99768 * 20 19 18 41 41 H 1.09002 * 109.47184 * 304.99778 * 20 19 18 42 42 H 1.08997 * 109.46985 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47002 * 299.99921 * 22 21 20 44 44 H 1.08998 * 109.47484 * 59.99280 * 22 21 20 45 45 H 1.09006 * 109.46777 * 94.50078 * 24 23 18 46 46 H 1.08997 * 109.47626 * 214.50275 * 24 23 18 47 47 H 1.09005 * 109.47000 * 334.50594 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5509 2.1092 1.1890 5 6 2.1754 1.5082 2.4218 6 1 2.8524 0.6716 2.3312 7 6 1.8817 2.0257 3.6656 8 7 1.0562 3.0434 3.7761 9 14 2.6552 1.2803 5.1938 10 1 3.9385 1.9685 5.4849 11 1 1.7329 1.4448 6.3459 12 1 2.9093 -0.1648 4.9654 13 6 1.6250 2.0828 -1.2310 14 6 2.3154 1.4490 -2.4111 15 6 1.7403 0.5091 -3.1639 16 16 2.8805 0.0456 -4.4243 17 6 4.0259 1.1568 -3.8112 18 7 5.2932 1.3682 -4.3418 19 6 5.6878 0.6999 -5.5843 20 6 5.2125 1.5261 -6.7811 21 8 5.8946 2.7818 -6.7941 22 6 5.5211 3.6348 -7.8780 23 6 6.1587 2.1882 -3.7133 24 6 7.4900 2.5050 -4.3443 25 8 5.8662 2.6708 -2.6398 26 7 3.5404 1.7740 -2.7799 27 1 -0.3634 0.5359 0.8768 28 1 -0.3633 0.4913 -0.9026 29 1 -0.3634 -1.0274 0.0257 30 1 1.8934 -0.5139 -0.8898 31 1 1.8932 -0.5137 0.8901 32 1 1.8365 3.1582 1.1115 33 1 0.4657 2.0322 1.2570 34 1 0.8492 3.4073 4.6511 35 1 0.5450 2.0099 -1.3597 36 1 1.9127 3.1319 -1.1621 37 1 0.7487 0.1043 -3.0253 38 1 6.7732 0.6047 -5.6166 39 1 5.2349 -0.2907 -5.6238 40 1 5.4273 0.9864 -7.7034 41 1 4.1389 1.6966 -6.7015 42 1 6.0830 4.5668 -7.8170 43 1 5.7420 3.1390 -8.8233 44 1 4.4539 3.8490 -7.8208 45 1 7.4123 3.4338 -4.9095 46 1 8.2442 2.6159 -3.5652 47 1 7.7765 1.6946 -5.0147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:27 Heat of formation + Delta-G solvation = -29.277986 kcal Electronic energy + Delta-G solvation = -28180.699409 eV Core-core repulsion = 24297.961427 eV Total energy + Delta-G solvation = -3882.737982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.75732 -40.45910 -38.85929 -38.53812 -36.83392 -34.77686 -32.43950 -31.17736 -30.93648 -30.28281 -28.97238 -27.20863 -26.79446 -25.37389 -24.97010 -24.23999 -22.06434 -20.78934 -20.12471 -19.01536 -18.38050 -17.97238 -17.68764 -17.23130 -17.16131 -16.88157 -16.52989 -16.27698 -16.01008 -15.57142 -15.49821 -15.09345 -14.79195 -14.65256 -14.45390 -14.06300 -13.95336 -13.62172 -13.48413 -13.35450 -13.16146 -13.03744 -12.93613 -12.74693 -12.67636 -12.57450 -12.51211 -12.26844 -12.10495 -11.82372 -11.55410 -11.39674 -11.24465 -11.21745 -10.62305 -10.61424 -10.25561 -10.13086 -9.13148 -8.87897 -8.20472 -6.29938 -0.24262 0.06284 0.63193 1.36491 1.39910 1.46538 1.50524 1.65231 2.02890 2.39614 2.82214 3.11149 3.29131 3.48638 3.68867 3.87333 3.96346 4.19891 4.21676 4.27228 4.30823 4.45341 4.47957 4.48826 4.49643 4.51594 4.61924 4.63994 4.67586 4.73187 4.80822 4.89513 4.92468 4.93938 5.00599 5.10056 5.19138 5.29620 5.34352 5.48831 5.65349 5.98321 6.05544 6.20482 6.38993 6.62609 6.84878 6.92273 7.16817 7.38516 8.90426 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.002869 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.834660 B = 9756.739374 C =10697.085169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.064 3.936 3 N -0.544 5.544 4 C 0.209 3.791 5 C -0.519 4.519 6 H 0.055 0.945 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.968 3.032 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.264 1.264 13 C 0.128 3.872 14 C 0.095 3.905 15 C -0.274 4.274 16 S 0.198 5.802 17 C 0.245 3.755 18 N -0.524 5.524 19 C 0.091 3.909 20 C 0.038 3.962 21 O -0.405 6.405 22 C 0.029 3.971 23 C 0.500 3.500 24 C -0.147 4.147 25 O -0.543 6.543 26 N -0.515 5.515 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.054 0.946 32 H -0.012 1.012 33 H -0.011 1.011 34 H 0.265 0.735 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.199 0.801 38 H 0.142 0.858 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.462 -9.033 -31.519 33.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.064 4.064 3 N -0.268 5.268 4 C 0.084 3.916 5 C -0.558 4.558 6 H 0.073 0.927 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.201 1.201 12 H -0.189 1.189 13 C -0.002 4.002 14 C -0.037 4.037 15 C -0.415 4.415 16 S 0.448 5.552 17 C -0.123 4.123 18 N -0.255 5.255 19 C -0.029 4.029 20 C -0.040 4.040 21 O -0.325 6.325 22 C -0.067 4.067 23 C 0.289 3.711 24 C -0.206 4.206 25 O -0.416 6.416 26 N -0.236 5.236 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.006 0.994 33 H 0.006 0.994 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.216 0.784 38 H 0.160 0.840 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.062 0.938 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.128 0.872 46 H 0.110 0.890 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.303 -8.904 -31.256 33.805 hybrid contribution -1.411 0.879 1.909 2.531 sum 7.891 -8.026 -29.347 31.432 Atomic orbital electron populations 1.22256 0.97396 1.02631 1.01231 1.21954 0.93664 0.89686 1.01104 1.62094 1.60418 1.03090 1.01175 1.19385 0.93032 0.92012 0.87213 1.21392 1.26696 1.16184 0.91506 0.92728 1.25879 0.95751 0.95509 1.02409 1.70082 1.36611 1.25697 1.25012 0.85407 0.78112 0.79012 0.78229 1.20360 1.20101 1.18855 1.20462 0.96229 0.96647 0.86891 1.19795 0.89049 0.97060 0.97747 1.26947 1.07067 1.05659 1.01827 1.82856 1.04423 1.37975 1.29919 1.24208 0.93805 0.98643 0.95596 1.45657 1.08441 1.45790 1.25587 1.22562 1.05572 0.95860 0.78912 1.23129 0.96211 0.85729 0.98918 1.87860 1.65423 1.28623 1.50584 1.22841 0.99673 0.94700 0.89474 1.22220 0.87723 0.76763 0.84366 1.21958 0.89882 1.06079 1.02694 1.90899 1.77704 1.50033 1.23008 1.66240 1.13113 1.29680 1.14605 0.94535 0.91817 0.90344 0.90818 0.92704 0.99376 0.99363 0.92666 0.91865 0.93099 0.78355 0.84047 0.86093 0.87475 0.93836 0.89220 0.91775 0.94925 0.87219 0.88958 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.36 9.25 71.98 0.67 -5.69 16 2 C 0.06 2.67 5.61 86.30 0.48 3.15 16 3 N -0.54 -27.03 4.70 -905.39 -4.25 -31.28 16 4 C 0.21 12.24 4.48 85.56 0.38 12.62 16 5 C -0.52 -32.04 8.51 25.60 0.22 -31.82 16 6 H 0.05 3.37 7.10 -2.91 -0.02 3.35 16 7 C 0.00 0.14 5.46 84.65 0.46 0.60 16 8 N -0.93 -59.24 13.29 21.45 0.28 -58.96 16 9 Si 0.97 47.42 29.54 68.60 2.03 49.45 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.26 -12.41 7.11 99.48 0.71 -11.71 16 13 C 0.13 5.54 5.22 85.56 0.45 5.99 16 14 C 0.10 3.59 5.55 41.45 0.23 3.82 16 15 C -0.27 -7.49 9.78 66.73 0.65 -6.84 16 16 S 0.20 4.01 21.76 -56.49 -1.23 2.78 16 17 C 0.24 7.41 7.63 179.20 1.37 8.78 16 18 N -0.52 -12.61 2.64 -643.74 -1.70 -14.31 16 19 C 0.09 0.94 5.40 86.38 0.47 1.41 16 20 C 0.04 0.34 6.26 71.98 0.45 0.79 16 21 O -0.41 -5.26 8.76 -148.98 -1.31 -6.56 16 22 C 0.03 0.27 11.01 113.37 1.25 1.52 16 23 C 0.50 14.77 7.55 87.66 0.66 15.43 16 24 C -0.15 -2.46 8.84 71.24 0.63 -1.83 16 25 O -0.54 -24.07 15.77 -3.04 -0.05 -24.12 16 26 N -0.51 -21.14 8.69 -189.59 -1.65 -22.78 16 27 H 0.04 1.57 6.20 -2.39 -0.01 1.56 16 28 H 0.06 2.00 6.44 -2.39 -0.02 1.98 16 29 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.07 2.72 6.25 -2.39 -0.01 2.70 16 31 H 0.05 2.53 6.85 -2.39 -0.02 2.52 16 32 H -0.01 -0.78 7.94 -2.39 -0.02 -0.79 16 33 H -0.01 -0.66 5.97 -2.38 -0.01 -0.68 16 34 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.06 2.42 6.13 -2.39 -0.01 2.41 16 36 H 0.05 2.47 7.94 -2.38 -0.02 2.45 16 37 H 0.20 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.14 0.65 5.64 -2.38 -0.01 0.63 16 39 H 0.12 0.73 7.15 -2.39 -0.02 0.72 16 40 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.11 1.75 7.55 -2.38 -0.02 1.73 16 46 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.12 0.98 5.59 -2.38 -0.01 0.97 16 Total: -1.00 -91.36 387.14 1.48 -89.88 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.98 Total: 7.99 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 8.37 Total: 7.91 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -7.31 Total: -127.33 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.35 Total: -30.68 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.23 Total: 2.78 kcal Total: -91.36 1.48 -89.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.601 kcal (2) G-P(sol) polarization free energy of solvation -91.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds