Wall clock time and date at job start Wed Apr 1 2020 01:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00153 * 2 1 4 4 H 1.08998 * 109.67826 * 180.52132 * 3 2 1 5 5 C 1.53360 * 109.67912 * 60.00005 * 3 2 1 6 6 C 1.53110 * 109.50921 * 190.29693 * 5 3 2 7 7 C 1.53366 * 109.50621 * 70.27825 * 6 5 3 8 8 C 1.50824 * 108.38110 * 310.06511 * 7 6 5 9 9 C 1.35745 * 124.12556 * 16.53073 * 8 7 6 10 10 C 1.39292 * 107.99314 * 180.17517 * 9 8 7 11 11 N 1.31074 * 108.07585 * 359.94388 * 10 9 8 12 12 N 1.34324 * 128.03170 * 196.63877 * 8 7 6 13 13 C 1.46506 * 126.08826 * 359.55851 * 12 8 7 14 14 S 1.65604 * 120.00183 * 180.02562 * 2 1 3 15 15 O 1.42099 * 104.27601 * 26.06964 * 14 2 1 16 16 O 1.42100 * 104.27927 * 153.92853 * 14 2 1 17 17 C 1.81405 * 104.44916 * 270.00075 * 14 2 1 18 18 C 1.52999 * 109.47057 * 179.97438 * 17 14 2 19 19 C 1.52994 * 109.47200 * 179.97438 * 18 17 14 20 20 C 1.50701 * 109.47354 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99857 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00213 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99821 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00069 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47361 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47299 * 119.99932 * 24 22 20 27 27 H 1.48502 * 109.47370 * 239.99784 * 24 22 20 28 28 H 1.08995 * 109.46719 * 90.00287 * 1 2 3 29 29 H 1.09002 * 109.47087 * 210.00037 * 1 2 3 30 30 H 1.08993 * 109.46691 * 329.99557 * 1 2 3 31 31 H 1.09000 * 109.46728 * 70.28785 * 5 3 2 32 32 H 1.09001 * 109.46225 * 310.30850 * 5 3 2 33 33 H 1.09000 * 109.46371 * 310.27057 * 6 5 3 34 34 H 1.09000 * 109.46226 * 190.28382 * 6 5 3 35 35 H 1.08996 * 109.68100 * 190.33765 * 7 6 5 36 36 H 1.08998 * 109.67784 * 69.78435 * 7 6 5 37 37 H 1.07998 * 125.96395 * 179.90300 * 10 9 8 38 38 H 1.08997 * 109.47363 * 90.00460 * 13 12 8 39 39 H 1.09007 * 109.46776 * 209.99758 * 13 12 8 40 40 H 1.08994 * 109.47187 * 329.99989 * 13 12 8 41 41 H 1.08996 * 109.46964 * 299.99686 * 17 14 2 42 42 H 1.09001 * 109.46792 * 60.00188 * 17 14 2 43 43 H 1.09000 * 109.47002 * 300.00294 * 18 17 14 44 44 H 1.09005 * 109.47002 * 59.99882 * 18 17 14 45 45 H 1.08994 * 109.47882 * 300.00692 * 19 18 17 46 46 H 1.09005 * 109.46900 * 60.00235 * 19 18 17 47 47 H 0.97001 * 120.00111 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2699 1.0734 -0.0093 5 6 1.8305 2.0770 1.2506 6 6 2.3903 3.4965 1.1244 7 6 1.6104 4.2607 0.0475 8 6 1.5541 3.4071 -1.1947 9 6 1.8175 2.0757 -1.2164 10 6 1.6710 1.6293 -2.5277 11 7 1.3303 2.6542 -3.2705 12 7 1.2505 3.7871 -2.4469 13 6 0.8933 5.1419 -2.8749 14 16 2.2931 -1.4341 -0.0006 15 8 1.3970 -2.3559 -0.6062 16 8 3.5396 -1.1189 -0.6057 17 6 2.5194 -1.8269 1.7559 18 6 3.2809 -3.1472 1.8892 19 6 3.4724 -3.4782 3.3706 20 6 4.2219 -4.7790 3.5019 21 1 4.5312 -5.3157 2.6172 22 6 4.5129 -5.2839 4.7515 23 7 4.1358 -4.6305 5.8288 24 14 5.4426 -6.8958 4.9143 25 1 5.7507 -7.4282 3.5628 26 1 6.7086 -6.6644 5.6550 27 1 4.6081 -7.8760 5.6546 28 1 -0.3632 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8899 0.5139 31 1 2.2554 1.5960 2.1316 32 1 0.7459 2.1216 1.3487 33 1 3.4428 3.4484 0.8453 34 1 2.2909 4.0123 2.0795 35 1 2.1163 5.2001 -0.1751 36 1 0.5990 4.4625 0.4003 37 1 1.8139 0.6159 -2.8725 38 1 1.7958 5.6829 -3.1593 39 1 0.2184 5.0869 -3.7291 40 1 0.4000 5.6638 -2.0550 41 1 3.0867 -1.0298 2.2362 42 1 1.5452 -1.9198 2.2358 43 1 2.7133 -3.9442 1.4088 44 1 4.2552 -3.0548 1.4090 45 1 4.0401 -2.6812 3.8506 46 1 2.4983 -3.5705 3.8511 47 1 4.3401 -4.9859 6.7080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125550467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:11 Heat of formation + Delta-G solvation = -6.071662 kcal Electronic energy + Delta-G solvation = -28336.439896 eV Core-core repulsion = 24454.708216 eV Total energy + Delta-G solvation = -3881.731680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.78186 -37.80519 -36.88237 -35.71058 -35.09416 -34.63811 -33.43644 -32.16914 -29.85266 -29.47099 -27.79252 -26.87068 -26.32069 -23.74199 -23.17607 -22.07433 -21.04508 -20.48450 -18.92231 -18.74285 -17.57877 -17.13033 -16.62527 -16.11225 -15.83040 -15.70492 -14.99114 -14.79030 -14.53085 -14.39092 -14.26034 -14.04737 -13.84526 -13.44233 -13.22345 -13.14032 -12.77236 -12.61636 -12.53934 -12.27026 -12.20808 -11.94067 -11.85617 -11.74200 -11.55943 -11.30813 -11.30050 -11.19621 -10.92787 -10.84111 -10.81156 -10.70490 -10.37434 -9.93782 -9.48850 -9.44885 -9.20730 -8.93615 -8.44297 -8.40260 -6.05091 -4.07798 0.46993 1.63311 2.26068 2.55267 2.88845 3.30078 3.37647 3.42831 4.04378 4.17527 4.22307 4.32551 4.42598 4.44920 4.59052 4.67152 4.76297 4.82781 4.92410 5.00830 5.11056 5.15740 5.18800 5.22232 5.24897 5.31414 5.33194 5.45509 5.46748 5.54177 5.72812 5.77794 5.82620 5.90438 5.92271 5.94616 6.19971 6.28381 6.47441 6.48326 6.58115 6.80207 6.89141 7.53062 7.58334 7.68205 7.93352 8.34041 8.98731 9.56918 11.06175 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.002495 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.629898 B =11219.051856 C =11818.956407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.998 5.998 3 C 0.227 3.773 4 H 0.109 0.891 5 C -0.136 4.136 6 C -0.111 4.111 7 C -0.056 4.056 8 C 0.091 3.909 9 C -0.240 4.240 10 C 0.073 3.927 11 N -0.303 5.303 12 N -0.371 5.371 13 C 0.102 3.898 14 S 2.593 3.407 15 O -0.958 6.958 16 O -0.958 6.958 17 C -0.609 4.609 18 C -0.106 4.106 19 C 0.031 3.969 20 C -0.525 4.525 21 H 0.059 0.941 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.894 3.106 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.179 0.821 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.021 0.979 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.919 23.493 -11.440 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.833 5.833 3 C 0.120 3.880 4 H 0.126 0.874 5 C -0.175 4.175 6 C -0.150 4.150 7 C -0.095 4.095 8 C -0.039 4.039 9 C -0.253 4.253 10 C -0.112 4.112 11 N -0.124 5.124 12 N -0.153 5.153 13 C -0.040 4.040 14 S 2.691 3.309 15 O -0.949 6.949 16 O -0.948 6.948 17 C -0.741 4.741 18 C -0.145 4.145 19 C -0.008 4.008 20 C -0.563 4.563 21 H 0.077 0.923 22 C -0.144 4.144 23 N -0.535 5.535 24 Si 0.722 3.278 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.196 0.804 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.018 23.564 -13.318 28.529 hybrid contribution 0.475 -0.898 1.584 1.881 sum -8.542 22.666 -11.734 26.915 Atomic orbital electron populations 1.21333 0.78729 1.02483 1.02047 1.57654 1.15046 1.20712 1.89908 1.19175 0.96229 0.81858 0.90734 0.87367 1.22069 1.02364 0.95161 0.97869 1.21529 1.00207 0.95165 0.98116 1.20375 1.01858 0.97031 0.90199 1.20891 1.00377 0.95203 0.87387 1.19997 1.16306 0.93034 0.95930 1.23523 0.97720 0.98327 0.91622 1.77575 1.25506 0.91893 1.17409 1.48223 1.53467 1.08372 1.05191 1.21814 1.01777 0.78199 1.02191 1.05606 0.73823 0.72826 0.78652 1.93567 1.64678 1.62195 1.74433 1.93564 1.43970 1.82791 1.74482 1.30602 1.10556 1.09393 1.23520 1.21498 0.98176 0.90670 1.04190 1.19064 0.97394 0.96758 0.87557 1.21301 1.36088 1.06513 0.92388 0.92317 1.25022 0.95947 0.97554 0.95913 1.69968 1.46849 1.38944 0.97706 0.86503 0.79572 0.83528 0.78243 1.19594 1.20955 1.20958 0.92773 0.91087 0.91282 0.90360 0.90691 0.90832 0.90311 0.90252 0.89770 0.80407 0.90811 0.89301 0.89692 0.85463 0.85490 0.91659 0.91613 0.96106 0.96139 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.00 9.54 59.85 0.57 1.57 16 2 N -1.00 -11.64 2.90 -115.58 -0.33 -11.98 16 3 C 0.23 2.44 2.82 -68.83 -0.19 2.25 16 4 H 0.11 1.26 6.88 -51.93 -0.36 0.90 16 5 C -0.14 -1.07 5.34 -26.49 -0.14 -1.21 16 6 C -0.11 -0.69 5.90 -26.48 -0.16 -0.85 16 7 C -0.06 -0.33 5.83 -27.63 -0.16 -0.49 16 8 C 0.09 0.86 6.73 -82.33 -0.55 0.31 16 9 C -0.24 -2.73 5.04 -105.05 -0.53 -3.26 16 10 C 0.07 0.95 11.84 -17.48 -0.21 0.74 16 11 N -0.30 -3.94 12.59 30.54 0.38 -3.55 16 12 N -0.37 -3.71 4.00 -63.88 -0.26 -3.97 16 13 C 0.10 0.55 11.32 59.85 0.68 1.23 16 14 S 2.59 39.08 5.37 -107.50 -0.58 38.50 16 15 O -0.96 -17.05 17.09 -57.54 -0.98 -18.04 16 16 O -0.96 -16.78 16.57 -57.54 -0.95 -17.73 16 17 C -0.61 -9.35 6.18 37.16 0.23 -9.12 16 18 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 19 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 20 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 21 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.90 -26.50 13.29 55.43 0.74 -25.77 16 24 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.67 7.79 -51.93 -0.40 0.27 16 30 H 0.07 0.55 6.29 -51.93 -0.33 0.22 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.54 6.31 -51.93 -0.33 0.21 16 33 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.25 7.90 -51.93 -0.41 -0.16 16 41 H 0.13 1.72 8.14 -51.93 -0.42 1.29 16 42 H 0.13 1.74 8.14 -51.92 -0.42 1.31 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -36.78 391.14 -9.97 -46.75 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -7.71 Total: -2.63 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -1.15 Total: -24.06 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.53 Total: -45.27 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.94 Total: -35.77 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 39.08 SS G_CDS: -0.58 Total: 38.50 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.78 -9.97 -46.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125550467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.683 kcal (2) G-P(sol) polarization free energy of solvation -36.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds