Wall clock time and date at job start Wed Apr 1 2020 01:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00153 * 2 1 4 4 H 1.08998 * 109.67826 * 180.52132 * 3 2 1 5 5 C 1.53360 * 109.67912 * 60.00005 * 3 2 1 6 6 C 1.53110 * 109.50921 * 190.29693 * 5 3 2 7 7 C 1.53366 * 109.50621 * 70.27825 * 6 5 3 8 8 C 1.50824 * 108.38110 * 310.06511 * 7 6 5 9 9 C 1.35745 * 124.12556 * 16.53073 * 8 7 6 10 10 C 1.39292 * 107.99314 * 180.17517 * 9 8 7 11 11 N 1.31074 * 108.07585 * 359.94388 * 10 9 8 12 12 N 1.34324 * 128.03170 * 196.63877 * 8 7 6 13 13 C 1.46506 * 126.08826 * 359.55851 * 12 8 7 14 14 S 1.65604 * 120.00183 * 180.02562 * 2 1 3 15 15 O 1.42099 * 104.27601 * 26.06964 * 14 2 1 16 16 O 1.42100 * 104.27927 * 153.92853 * 14 2 1 17 17 C 1.81405 * 104.44916 * 270.00075 * 14 2 1 18 18 C 1.52999 * 109.47057 * 179.97438 * 17 14 2 19 19 C 1.52994 * 109.47200 * 179.97438 * 18 17 14 20 20 C 1.50701 * 109.47354 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99857 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00213 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99821 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00069 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47361 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47299 * 119.99932 * 24 22 20 27 27 H 1.48502 * 109.47370 * 239.99784 * 24 22 20 28 28 H 1.08995 * 109.46719 * 90.00287 * 1 2 3 29 29 H 1.09002 * 109.47087 * 210.00037 * 1 2 3 30 30 H 1.08993 * 109.46691 * 329.99557 * 1 2 3 31 31 H 1.09000 * 109.46728 * 70.28785 * 5 3 2 32 32 H 1.09001 * 109.46225 * 310.30850 * 5 3 2 33 33 H 1.09000 * 109.46371 * 310.27057 * 6 5 3 34 34 H 1.09000 * 109.46226 * 190.28382 * 6 5 3 35 35 H 1.08996 * 109.68100 * 190.33765 * 7 6 5 36 36 H 1.08998 * 109.67784 * 69.78435 * 7 6 5 37 37 H 1.07998 * 125.96395 * 179.90300 * 10 9 8 38 38 H 1.08997 * 109.47363 * 90.00460 * 13 12 8 39 39 H 1.09007 * 109.46776 * 209.99758 * 13 12 8 40 40 H 1.08994 * 109.47187 * 329.99989 * 13 12 8 41 41 H 1.08996 * 109.46964 * 299.99686 * 17 14 2 42 42 H 1.09001 * 109.46792 * 60.00188 * 17 14 2 43 43 H 1.09000 * 109.47002 * 300.00294 * 18 17 14 44 44 H 1.09005 * 109.47002 * 59.99882 * 18 17 14 45 45 H 1.08994 * 109.47882 * 300.00692 * 19 18 17 46 46 H 1.09005 * 109.46900 * 60.00235 * 19 18 17 47 47 H 0.97001 * 120.00111 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2699 1.0734 -0.0093 5 6 1.8305 2.0770 1.2506 6 6 2.3903 3.4965 1.1244 7 6 1.6104 4.2607 0.0475 8 6 1.5541 3.4071 -1.1947 9 6 1.8175 2.0757 -1.2164 10 6 1.6710 1.6293 -2.5277 11 7 1.3303 2.6542 -3.2705 12 7 1.2505 3.7871 -2.4469 13 6 0.8933 5.1419 -2.8749 14 16 2.2931 -1.4341 -0.0006 15 8 1.3970 -2.3559 -0.6062 16 8 3.5396 -1.1189 -0.6057 17 6 2.5194 -1.8269 1.7559 18 6 3.2809 -3.1472 1.8892 19 6 3.4724 -3.4782 3.3706 20 6 4.2219 -4.7790 3.5019 21 1 4.5312 -5.3157 2.6172 22 6 4.5129 -5.2839 4.7515 23 7 4.1358 -4.6305 5.8288 24 14 5.4426 -6.8958 4.9143 25 1 5.7507 -7.4282 3.5628 26 1 6.7086 -6.6644 5.6550 27 1 4.6081 -7.8760 5.6546 28 1 -0.3632 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8899 0.5139 31 1 2.2554 1.5960 2.1316 32 1 0.7459 2.1216 1.3487 33 1 3.4428 3.4484 0.8453 34 1 2.2909 4.0123 2.0795 35 1 2.1163 5.2001 -0.1751 36 1 0.5990 4.4625 0.4003 37 1 1.8139 0.6159 -2.8725 38 1 1.7958 5.6829 -3.1593 39 1 0.2184 5.0869 -3.7291 40 1 0.4000 5.6638 -2.0550 41 1 3.0867 -1.0298 2.2362 42 1 1.5452 -1.9198 2.2358 43 1 2.7133 -3.9442 1.4088 44 1 4.2552 -3.0548 1.4090 45 1 4.0401 -2.6812 3.8506 46 1 2.4983 -3.5705 3.8511 47 1 4.3401 -4.9859 6.7080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125550467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:10 Heat of formation + Delta-G solvation = -31.267674 kcal Electronic energy + Delta-G solvation = -28337.532477 eV Core-core repulsion = 24454.708216 eV Total energy + Delta-G solvation = -3882.824261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.54281 -38.59731 -38.18881 -37.03316 -36.45915 -35.78709 -34.15658 -34.13853 -30.50688 -30.19805 -29.63583 -27.45878 -27.16024 -25.59565 -23.93535 -22.78499 -22.31545 -21.73762 -19.93766 -19.54159 -18.75906 -18.52097 -17.90889 -17.28009 -17.03924 -16.59609 -16.47841 -15.99883 -15.58860 -15.34241 -15.21530 -14.92368 -14.57417 -14.44816 -14.18751 -14.03652 -13.82986 -13.67587 -13.56599 -13.49702 -13.31409 -13.18145 -13.12820 -12.98286 -12.76668 -12.67073 -12.59949 -12.58636 -12.15913 -11.93997 -11.79350 -11.74632 -11.62635 -11.42646 -11.33882 -11.02338 -10.56854 -10.19963 -9.98891 -9.23443 -8.21968 -6.32473 -0.76571 0.88236 1.39982 1.40884 1.54010 1.56892 1.63939 1.89522 2.40567 2.82499 3.11477 3.15490 3.54820 3.61033 3.67882 3.83719 3.91547 4.05734 4.10284 4.22644 4.29333 4.40511 4.41523 4.42221 4.57659 4.61815 4.63997 4.67745 4.70743 4.76771 4.83088 4.90565 4.95173 5.02318 5.06642 5.14030 5.24176 5.28990 5.30206 5.46634 5.54190 5.61614 5.64381 5.71740 5.80648 6.17091 6.21093 6.70308 6.82950 7.36617 8.89630 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.002495 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.629898 B =11219.051856 C =11818.956407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.988 5.988 3 C 0.222 3.778 4 H 0.092 0.908 5 C -0.134 4.134 6 C -0.110 4.110 7 C -0.052 4.052 8 C 0.104 3.896 9 C -0.262 4.262 10 C 0.050 3.950 11 N -0.338 5.338 12 N -0.370 5.370 13 C 0.090 3.910 14 S 2.614 3.386 15 O -0.988 6.988 16 O -0.986 6.986 17 C -0.605 4.605 18 C -0.107 4.107 19 C 0.032 3.968 20 C -0.551 4.551 21 H 0.058 0.942 22 C 0.003 3.997 23 N -0.928 5.928 24 Si 0.962 3.038 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.276 1.276 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.164 0.836 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.006 0.994 46 H 0.004 0.996 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 25.704 -10.506 29.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.825 5.825 3 C 0.116 3.884 4 H 0.110 0.890 5 C -0.173 4.173 6 C -0.149 4.149 7 C -0.090 4.090 8 C -0.027 4.027 9 C -0.275 4.275 10 C -0.134 4.134 11 N -0.160 5.160 12 N -0.151 5.151 13 C -0.049 4.049 14 S 2.711 3.289 15 O -0.979 6.979 16 O -0.976 6.976 17 C -0.736 4.736 18 C -0.146 4.146 19 C -0.006 4.006 20 C -0.590 4.590 21 H 0.076 0.924 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.786 3.214 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.202 1.202 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.181 0.819 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.166 0.834 42 H 0.165 0.835 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.024 0.976 46 H 0.023 0.977 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.632 25.774 -12.403 30.181 hybrid contribution 0.630 -1.458 1.252 2.022 sum -9.002 24.316 -11.152 28.225 Atomic orbital electron populations 1.21523 0.77379 1.04128 1.02046 1.57329 1.15705 1.19879 1.89613 1.19350 0.95299 0.81461 0.92314 0.88988 1.22102 1.03273 0.95849 0.96085 1.21566 0.99662 0.94184 0.99484 1.20572 1.03466 0.97025 0.87968 1.21471 0.98044 0.94930 0.88295 1.20108 1.17886 0.94259 0.95290 1.23490 0.98953 0.98121 0.92871 1.77477 1.26806 0.93005 1.18750 1.48599 1.52382 1.08951 1.05162 1.22219 1.02780 0.76245 1.03687 1.04748 0.73031 0.73071 0.78019 1.93522 1.65300 1.63963 1.75083 1.93522 1.45650 1.83373 1.75089 1.30528 1.11250 1.07320 1.24483 1.21317 0.99065 0.93416 1.00790 1.18955 0.95806 0.95349 0.90485 1.21763 1.36629 1.07873 0.92687 0.92375 1.25910 0.96810 1.01193 0.95588 1.70069 1.47846 1.40658 0.98252 0.85446 0.78346 0.79124 0.78454 1.18972 1.20143 1.20186 0.93705 0.90531 0.88495 0.89954 0.89477 0.91653 0.87799 0.87901 0.87426 0.81891 0.89529 0.89248 0.86391 0.83414 0.83522 0.91870 0.91756 0.97603 0.97735 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.78 9.54 127.77 1.22 3.00 16 2 N -0.99 -22.63 2.90 -519.58 -1.51 -24.14 16 3 C 0.22 4.61 2.82 44.41 0.13 4.74 16 4 H 0.09 2.18 6.88 -2.39 -0.02 2.16 16 5 C -0.13 -1.76 5.34 30.75 0.16 -1.59 16 6 C -0.11 -0.98 5.90 30.75 0.18 -0.80 16 7 C -0.05 -0.39 5.83 30.01 0.18 -0.21 16 8 C 0.10 1.73 6.73 41.64 0.28 2.01 16 9 C -0.26 -5.84 5.04 -20.14 -0.10 -5.94 16 10 C 0.05 1.34 11.84 85.06 1.01 2.35 16 11 N -0.34 -8.93 12.59 -57.28 -0.72 -9.65 16 12 N -0.37 -6.80 4.00 -356.00 -1.42 -8.22 16 13 C 0.09 0.73 11.32 127.77 1.45 2.18 16 14 S 2.61 79.78 5.37 -56.49 -0.30 79.47 16 15 O -0.99 -35.90 17.09 -127.65 -2.18 -38.08 16 16 O -0.99 -35.64 16.57 -127.65 -2.12 -37.76 16 17 C -0.60 -18.31 6.18 71.98 0.44 -17.87 16 18 C -0.11 -4.40 5.16 30.59 0.16 -4.24 16 19 C 0.03 1.66 4.97 29.85 0.15 1.81 16 20 C -0.55 -31.51 9.11 25.60 0.23 -31.27 16 21 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 22 C 0.00 0.19 5.46 84.65 0.46 0.65 16 23 N -0.93 -55.35 13.29 21.45 0.28 -55.07 16 24 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.37 7.79 -2.39 -0.02 1.35 16 30 H 0.10 1.29 6.29 -2.39 -0.02 1.27 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.94 6.31 -2.39 -0.02 0.92 16 33 H 0.06 0.71 8.11 -2.39 -0.02 0.69 16 34 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.16 4.61 8.06 -2.91 -0.02 4.59 16 38 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 0.73 8.14 -2.38 -0.02 0.72 16 40 H 0.12 0.19 7.90 -2.39 -0.02 0.17 16 41 H 0.15 3.84 8.14 -2.39 -0.02 3.82 16 42 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 43 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 45 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 46 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 47 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -81.65 391.14 0.95 -80.70 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.95 Total: 11.57 kcal Atomic # 6 Polarization: -51.13 SS G_CDS: 5.94 Total: -45.18 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -3.37 Total: -97.07 kcal Atomic # 8 Polarization: -71.54 SS G_CDS: -4.30 Total: -75.84 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 79.78 SS G_CDS: -0.30 Total: 79.47 kcal Total: -81.65 0.95 -80.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125550467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.434 kcal (2) G-P(sol) polarization free energy of solvation -81.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds