Wall clock time and date at job start Wed Apr 1 2020 01:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00060 * 2 1 4 4 H 1.08998 * 109.71077 * 180.53968 * 3 2 1 5 5 C 1.53364 * 109.67965 * 301.08422 * 3 2 1 6 6 C 1.53107 * 109.50595 * 169.67402 * 5 3 2 7 7 C 1.53367 * 109.51292 * 289.72143 * 6 5 3 8 8 C 1.50821 * 108.38002 * 49.92853 * 7 6 5 9 9 C 1.35748 * 124.12557 * 343.47484 * 8 7 6 10 10 C 1.39300 * 107.99329 * 179.89978 * 9 8 7 11 11 N 1.31072 * 108.07725 * 0.04444 * 10 9 8 12 12 N 1.34322 * 128.03092 * 163.44893 * 8 7 6 13 13 C 1.46498 * 126.09443 * 0.12283 * 12 8 7 14 14 S 1.65596 * 119.99727 * 180.02562 * 2 1 3 15 15 O 1.42095 * 104.27956 * 26.07255 * 14 2 1 16 16 O 1.42106 * 104.27642 * 153.92910 * 14 2 1 17 17 C 1.81405 * 104.45074 * 269.99669 * 14 2 1 18 18 C 1.52991 * 109.47304 * 179.97438 * 17 14 2 19 19 C 1.53003 * 109.47309 * 179.97438 * 18 17 14 20 20 C 1.50700 * 109.47366 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99997 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99989 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00137 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99762 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47461 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46980 * 119.99797 * 24 22 20 27 27 H 1.48498 * 109.46787 * 239.99335 * 24 22 20 28 28 H 1.09002 * 109.47153 * 89.99727 * 1 2 3 29 29 H 1.08995 * 109.46978 * 209.99992 * 1 2 3 30 30 H 1.09004 * 109.46810 * 330.00047 * 1 2 3 31 31 H 1.09001 * 109.46588 * 49.66267 * 5 3 2 32 32 H 1.08993 * 109.46359 * 289.68462 * 5 3 2 33 33 H 1.09003 * 109.46130 * 169.71032 * 6 5 3 34 34 H 1.08998 * 109.46522 * 49.73830 * 6 5 3 35 35 H 1.09007 * 109.67983 * 169.64808 * 7 6 5 36 36 H 1.08994 * 109.68076 * 290.16669 * 7 6 5 37 37 H 1.07992 * 125.96178 * 180.02562 * 10 9 8 38 38 H 1.09005 * 109.46749 * 89.99964 * 13 12 8 39 39 H 1.09002 * 109.47273 * 210.00161 * 13 12 8 40 40 H 1.09001 * 109.47023 * 330.00032 * 13 12 8 41 41 H 1.09001 * 109.46864 * 300.00534 * 17 14 2 42 42 H 1.08998 * 109.46710 * 60.00097 * 17 14 2 43 43 H 1.08993 * 109.47594 * 300.00457 * 18 17 14 44 44 H 1.09005 * 109.46709 * 60.00605 * 18 17 14 45 45 H 1.09001 * 109.46877 * 300.00652 * 19 18 17 46 46 H 1.08998 * 109.46693 * 60.00212 * 19 18 17 47 47 H 0.96993 * 119.99838 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2699 1.0741 -0.0097 5 6 1.8101 2.0888 -1.2367 6 6 2.3713 3.5073 -1.1059 7 6 1.6087 4.2608 -0.0092 8 6 1.5726 3.3953 1.2254 9 6 1.8366 2.0638 1.2300 10 6 1.7096 1.6044 2.5390 11 7 1.3799 2.6218 3.2968 12 7 1.2875 3.7628 2.4856 13 6 0.9413 5.1141 2.9332 14 16 2.2929 -1.4341 -0.0006 15 8 1.3969 -2.3558 -0.6063 16 8 3.5394 -1.1189 -0.6057 17 6 2.5193 -1.8269 1.7558 18 6 3.2807 -3.1472 1.8892 19 6 3.4722 -3.4782 3.3707 20 6 4.2228 -4.7783 3.5020 21 1 4.5319 -5.3152 2.6174 22 6 4.5139 -5.2831 4.7516 23 7 4.1371 -4.6296 5.8289 24 14 5.4449 -6.8944 4.9144 25 1 5.7526 -7.4271 3.5628 26 1 6.7107 -6.6620 5.6553 27 1 4.6111 -7.8751 5.6546 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.7240 2.1339 -1.3170 32 1 2.2209 1.6165 -2.1290 33 1 2.2565 4.0321 -2.0543 34 1 3.4283 3.4570 -0.8444 35 1 2.1182 5.1982 0.2143 36 1 0.5920 4.4663 -0.3441 37 1 1.8568 0.5875 2.8713 38 1 -0.1388 5.2497 2.8774 39 1 1.2722 5.2517 3.9626 40 1 1.4330 5.8461 2.2925 41 1 3.0866 -1.0297 2.2362 42 1 1.5451 -1.9197 2.2358 43 1 2.7131 -3.9441 1.4089 44 1 4.2550 -3.0548 1.4091 45 1 4.0401 -2.6811 3.8505 46 1 2.4982 -3.5703 3.8511 47 1 4.3422 -4.9845 6.7080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125550671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:14 Heat of formation + Delta-G solvation = -7.011413 kcal Electronic energy + Delta-G solvation = -28609.593505 eV Core-core repulsion = 24727.821074 eV Total energy + Delta-G solvation = -3881.772431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77687 -37.77338 -36.88688 -35.70557 -35.11983 -34.63348 -33.40461 -32.14974 -29.84227 -29.45572 -27.80084 -26.84018 -26.29856 -23.76683 -23.10178 -22.08582 -21.01703 -20.52941 -18.89190 -18.72188 -17.58819 -17.11256 -16.59515 -16.13345 -15.84601 -15.70837 -14.94433 -14.72740 -14.50027 -14.40156 -14.22582 -14.03160 -13.90681 -13.41095 -13.20989 -13.14726 -12.74217 -12.60338 -12.49967 -12.23581 -12.18411 -11.92454 -11.89512 -11.72638 -11.60720 -11.30617 -11.23121 -11.17437 -10.91058 -10.82623 -10.78777 -10.71652 -10.37070 -9.91424 -9.49299 -9.43971 -9.18827 -8.89786 -8.45277 -8.37773 -6.02317 -4.05217 0.47887 1.65417 2.28320 2.55291 2.88494 3.31734 3.39190 3.44180 4.04220 4.18109 4.25748 4.33419 4.44629 4.46653 4.56609 4.66574 4.80683 4.85902 4.91808 5.04266 5.12295 5.16056 5.21087 5.23256 5.26095 5.33624 5.34688 5.43422 5.50382 5.55014 5.73233 5.77148 5.84815 5.89533 5.94452 5.97605 6.16975 6.30055 6.47404 6.51097 6.58667 6.81613 6.91512 7.55589 7.61408 7.71405 7.95967 8.36568 9.01343 9.59389 11.08881 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.003043 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.654947 B = 9200.630627 C =10522.866445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.997 5.997 3 C 0.228 3.772 4 H 0.109 0.891 5 C -0.125 4.125 6 C -0.112 4.112 7 C -0.056 4.056 8 C 0.093 3.907 9 C -0.251 4.251 10 C 0.066 3.934 11 N -0.295 5.295 12 N -0.370 5.370 13 C 0.101 3.899 14 S 2.596 3.404 15 O -0.958 6.958 16 O -0.959 6.959 17 C -0.613 4.613 18 C -0.104 4.104 19 C 0.030 3.970 20 C -0.525 4.525 21 H 0.058 0.942 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.271 1.271 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.182 0.818 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.835 23.552 -12.541 28.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.832 5.832 3 C 0.121 3.879 4 H 0.126 0.874 5 C -0.165 4.165 6 C -0.150 4.150 7 C -0.094 4.094 8 C -0.037 4.037 9 C -0.264 4.264 10 C -0.119 4.119 11 N -0.116 5.116 12 N -0.151 5.151 13 C -0.041 4.041 14 S 2.693 3.307 15 O -0.949 6.949 16 O -0.950 6.950 17 C -0.745 4.745 18 C -0.144 4.144 19 C -0.008 4.008 20 C -0.563 4.563 21 H 0.077 0.923 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.721 3.279 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.199 0.801 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.919 23.614 -11.893 27.903 hybrid contribution 0.449 -0.882 0.429 1.079 sum -8.470 22.731 -11.464 26.830 Atomic orbital electron populations 1.21329 0.78700 1.02806 1.01805 1.57654 1.15065 1.20730 1.89795 1.19172 0.96246 0.81854 0.90620 0.87379 1.21926 1.01919 0.94710 0.97909 1.21539 1.00352 0.95285 0.97852 1.20374 1.01920 0.96875 0.90271 1.20881 1.00302 0.95312 0.87194 1.20143 1.17051 0.93289 0.95938 1.23662 0.98170 0.98757 0.91356 1.77645 1.24807 0.91600 1.17523 1.48279 1.53521 1.08412 1.04928 1.21827 1.01562 0.78176 1.02489 1.05532 0.73768 0.72793 0.78592 1.93564 1.64692 1.62170 1.74449 1.93554 1.44000 1.82864 1.74540 1.30665 1.10608 1.09503 1.23725 1.21483 0.98122 0.90542 1.04221 1.19066 0.97413 0.96768 0.87539 1.21293 1.36110 1.06550 0.92367 0.92341 1.25021 0.95947 0.97515 0.95922 1.69969 1.46787 1.38907 0.97704 0.86514 0.79592 0.83577 0.78222 1.19599 1.20969 1.20977 0.92647 0.91126 0.91287 0.90991 0.90574 0.90476 0.90834 0.90282 0.89759 0.80082 0.90794 0.89197 0.89687 0.85459 0.85386 0.91651 0.91625 0.96081 0.96109 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.00 9.05 59.85 0.54 1.54 16 2 N -1.00 -11.77 2.89 -115.57 -0.33 -12.10 16 3 C 0.23 2.48 2.82 -68.82 -0.19 2.29 16 4 H 0.11 1.27 6.88 -51.93 -0.36 0.91 16 5 C -0.13 -1.05 5.33 -26.49 -0.14 -1.19 16 6 C -0.11 -0.69 5.90 -26.49 -0.16 -0.85 16 7 C -0.06 -0.33 5.90 -27.63 -0.16 -0.49 16 8 C 0.09 0.88 6.73 -82.33 -0.55 0.33 16 9 C -0.25 -2.80 4.54 -105.05 -0.48 -3.28 16 10 C 0.07 0.85 11.84 -17.48 -0.21 0.64 16 11 N -0.30 -4.00 12.59 30.54 0.38 -3.62 16 12 N -0.37 -3.82 4.00 -63.88 -0.26 -4.08 16 13 C 0.10 0.59 11.32 59.85 0.68 1.27 16 14 S 2.60 39.44 5.37 -107.50 -0.58 38.86 16 15 O -0.96 -17.05 17.09 -57.54 -0.98 -18.04 16 16 O -0.96 -16.78 16.57 -57.54 -0.95 -17.73 16 17 C -0.61 -9.66 5.78 37.15 0.21 -9.45 16 18 C -0.10 -2.14 5.16 -26.73 -0.14 -2.28 16 19 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 20 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 21 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 24 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.70 7.79 -51.93 -0.40 0.29 16 30 H 0.07 0.63 7.28 -51.93 -0.38 0.25 16 31 H 0.07 0.56 7.31 -51.93 -0.38 0.18 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 35 H 0.08 0.34 7.76 -51.93 -0.40 -0.07 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.18 2.22 6.73 -52.49 -0.35 1.87 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.28 7.57 -51.93 -0.39 -0.11 16 41 H 0.13 1.81 7.26 -51.92 -0.38 1.43 16 42 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 388.90 15.07 5.86 5.86 Total: -1.00 -37.00 388.90 -9.95 -46.95 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.66 Total: -2.25 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -1.15 Total: -24.52 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.53 Total: -45.93 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.94 Total: -35.77 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 39.44 SS G_CDS: -0.58 Total: 38.86 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.00 -9.95 -46.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125550671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.939 kcal (2) G-P(sol) polarization free energy of solvation -37.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds