Wall clock time and date at job start Wed Apr 1 2020 01:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00060 * 2 1 4 4 H 1.08998 * 109.71077 * 180.53968 * 3 2 1 5 5 C 1.53364 * 109.67965 * 301.08422 * 3 2 1 6 6 C 1.53107 * 109.50595 * 169.67402 * 5 3 2 7 7 C 1.53367 * 109.51292 * 289.72143 * 6 5 3 8 8 C 1.50821 * 108.38002 * 49.92853 * 7 6 5 9 9 C 1.35748 * 124.12557 * 343.47484 * 8 7 6 10 10 C 1.39300 * 107.99329 * 179.89978 * 9 8 7 11 11 N 1.31072 * 108.07725 * 0.04444 * 10 9 8 12 12 N 1.34322 * 128.03092 * 163.44893 * 8 7 6 13 13 C 1.46498 * 126.09443 * 0.12283 * 12 8 7 14 14 S 1.65596 * 119.99727 * 180.02562 * 2 1 3 15 15 O 1.42095 * 104.27956 * 26.07255 * 14 2 1 16 16 O 1.42106 * 104.27642 * 153.92910 * 14 2 1 17 17 C 1.81405 * 104.45074 * 269.99669 * 14 2 1 18 18 C 1.52991 * 109.47304 * 179.97438 * 17 14 2 19 19 C 1.53003 * 109.47309 * 179.97438 * 18 17 14 20 20 C 1.50700 * 109.47366 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99997 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99989 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00137 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99762 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47461 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46980 * 119.99797 * 24 22 20 27 27 H 1.48498 * 109.46787 * 239.99335 * 24 22 20 28 28 H 1.09002 * 109.47153 * 89.99727 * 1 2 3 29 29 H 1.08995 * 109.46978 * 209.99992 * 1 2 3 30 30 H 1.09004 * 109.46810 * 330.00047 * 1 2 3 31 31 H 1.09001 * 109.46588 * 49.66267 * 5 3 2 32 32 H 1.08993 * 109.46359 * 289.68462 * 5 3 2 33 33 H 1.09003 * 109.46130 * 169.71032 * 6 5 3 34 34 H 1.08998 * 109.46522 * 49.73830 * 6 5 3 35 35 H 1.09007 * 109.67983 * 169.64808 * 7 6 5 36 36 H 1.08994 * 109.68076 * 290.16669 * 7 6 5 37 37 H 1.07992 * 125.96178 * 180.02562 * 10 9 8 38 38 H 1.09005 * 109.46749 * 89.99964 * 13 12 8 39 39 H 1.09002 * 109.47273 * 210.00161 * 13 12 8 40 40 H 1.09001 * 109.47023 * 330.00032 * 13 12 8 41 41 H 1.09001 * 109.46864 * 300.00534 * 17 14 2 42 42 H 1.08998 * 109.46710 * 60.00097 * 17 14 2 43 43 H 1.08993 * 109.47594 * 300.00457 * 18 17 14 44 44 H 1.09005 * 109.46709 * 60.00605 * 18 17 14 45 45 H 1.09001 * 109.46877 * 300.00652 * 19 18 17 46 46 H 1.08998 * 109.46693 * 60.00212 * 19 18 17 47 47 H 0.96993 * 119.99838 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2699 1.0741 -0.0097 5 6 1.8101 2.0888 -1.2367 6 6 2.3713 3.5073 -1.1059 7 6 1.6087 4.2608 -0.0092 8 6 1.5726 3.3953 1.2254 9 6 1.8366 2.0638 1.2300 10 6 1.7096 1.6044 2.5390 11 7 1.3799 2.6218 3.2968 12 7 1.2875 3.7628 2.4856 13 6 0.9413 5.1141 2.9332 14 16 2.2929 -1.4341 -0.0006 15 8 1.3969 -2.3558 -0.6063 16 8 3.5394 -1.1189 -0.6057 17 6 2.5193 -1.8269 1.7558 18 6 3.2807 -3.1472 1.8892 19 6 3.4722 -3.4782 3.3707 20 6 4.2228 -4.7783 3.5020 21 1 4.5319 -5.3152 2.6174 22 6 4.5139 -5.2831 4.7516 23 7 4.1371 -4.6296 5.8289 24 14 5.4449 -6.8944 4.9144 25 1 5.7526 -7.4271 3.5628 26 1 6.7107 -6.6620 5.6553 27 1 4.6111 -7.8751 5.6546 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.7240 2.1339 -1.3170 32 1 2.2209 1.6165 -2.1290 33 1 2.2565 4.0321 -2.0543 34 1 3.4283 3.4570 -0.8444 35 1 2.1182 5.1982 0.2143 36 1 0.5920 4.4663 -0.3441 37 1 1.8568 0.5875 2.8713 38 1 -0.1388 5.2497 2.8774 39 1 1.2722 5.2517 3.9626 40 1 1.4330 5.8461 2.2925 41 1 3.0866 -1.0297 2.2362 42 1 1.5451 -1.9197 2.2358 43 1 2.7131 -3.9441 1.4089 44 1 4.2550 -3.0548 1.4091 45 1 4.0401 -2.6811 3.8505 46 1 2.4982 -3.5703 3.8511 47 1 4.3422 -4.9845 6.7080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125550671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:13 Heat of formation + Delta-G solvation = -32.453892 kcal Electronic energy + Delta-G solvation = -28610.696774 eV Core-core repulsion = 24727.821074 eV Total energy + Delta-G solvation = -3882.875700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.55204 -38.59309 -38.20009 -37.04724 -36.48092 -35.83261 -34.21750 -34.09369 -30.51751 -30.19807 -29.68066 -27.47196 -27.15301 -25.62295 -23.94069 -22.77139 -22.31563 -21.83141 -19.90941 -19.55807 -18.77197 -18.55285 -17.89659 -17.23442 -17.15400 -16.65164 -16.48341 -15.98615 -15.57754 -15.33776 -15.21939 -14.90985 -14.62055 -14.48348 -14.14702 -14.06807 -13.81304 -13.71720 -13.56918 -13.52891 -13.33844 -13.17906 -13.10936 -12.99851 -12.78594 -12.71490 -12.61800 -12.60086 -12.16213 -11.92444 -11.80458 -11.76960 -11.58680 -11.48416 -11.36432 -11.08555 -10.59064 -10.20990 -9.98205 -9.24993 -8.23233 -6.34614 -0.77323 0.89542 1.39029 1.39239 1.53060 1.55139 1.64562 1.88183 2.39204 2.78097 3.10095 3.13556 3.53927 3.61009 3.66804 3.81671 3.87142 4.01956 4.09414 4.24793 4.25612 4.35300 4.41277 4.45049 4.52310 4.59542 4.62559 4.69991 4.73348 4.75308 4.84747 4.91095 4.93911 4.99920 5.04461 5.12849 5.20869 5.28109 5.28927 5.44440 5.49936 5.61259 5.62664 5.69752 5.78546 6.16984 6.18676 6.72137 6.81290 7.34816 8.88506 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.003043 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.654947 B = 9200.630627 C =10522.866445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.987 5.987 3 C 0.224 3.776 4 H 0.093 0.907 5 C -0.125 4.125 6 C -0.109 4.109 7 C -0.051 4.051 8 C 0.105 3.895 9 C -0.268 4.268 10 C 0.047 3.953 11 N -0.339 5.339 12 N -0.370 5.370 13 C 0.090 3.910 14 S 2.622 3.378 15 O -0.982 6.982 16 O -0.982 6.982 17 C -0.616 4.616 18 C -0.103 4.103 19 C 0.032 3.968 20 C -0.551 4.551 21 H 0.061 0.939 22 C 0.001 3.999 23 N -0.931 5.931 24 Si 0.964 3.036 25 H -0.262 1.262 26 H -0.277 1.277 27 H -0.276 1.276 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.173 0.827 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.001 0.999 46 H 0.002 0.998 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.368 25.530 -14.254 30.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.824 5.824 3 C 0.117 3.883 4 H 0.111 0.889 5 C -0.164 4.164 6 C -0.147 4.147 7 C -0.090 4.090 8 C -0.026 4.026 9 C -0.281 4.281 10 C -0.138 4.138 11 N -0.161 5.161 12 N -0.151 5.151 13 C -0.050 4.050 14 S 2.718 3.282 15 O -0.973 6.973 16 O -0.972 6.972 17 C -0.746 4.746 18 C -0.142 4.142 19 C -0.006 4.006 20 C -0.589 4.589 21 H 0.079 0.921 22 C -0.197 4.197 23 N -0.571 5.571 24 Si 0.789 3.211 25 H -0.186 1.186 26 H -0.202 1.202 27 H -0.202 1.202 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.190 0.810 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.136 0.864 41 H 0.156 0.844 42 H 0.161 0.839 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.019 0.981 46 H 0.020 0.980 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.450 25.588 -13.593 30.476 hybrid contribution 0.564 -1.357 0.982 1.768 sum -8.886 24.231 -12.610 28.725 Atomic orbital electron populations 1.21520 0.77269 1.03416 1.02891 1.57371 1.15805 1.19922 1.89334 1.19338 0.95385 0.81468 0.92116 0.88882 1.21955 1.02713 0.95660 0.96059 1.21564 0.99787 0.94018 0.99360 1.20570 1.03512 0.96901 0.88012 1.21480 0.97942 0.95206 0.88012 1.20171 1.18517 0.94321 0.95130 1.23689 0.98970 0.98642 0.92454 1.77550 1.26499 0.92919 1.19137 1.48619 1.52576 1.08890 1.04987 1.22214 1.02991 0.76655 1.03114 1.04556 0.73095 0.73058 0.77488 1.93526 1.65222 1.63789 1.74727 1.93517 1.45492 1.83423 1.74790 1.30653 1.10922 1.07323 1.25731 1.21284 0.99081 0.93201 1.00638 1.18951 0.95653 0.95358 0.90669 1.21765 1.36571 1.07767 0.92782 0.92077 1.25963 0.96826 1.01348 0.95537 1.70090 1.47903 1.40771 0.98296 0.85407 0.78239 0.78905 0.78588 1.18637 1.20218 1.20191 0.91260 0.91201 0.90074 0.89921 0.90940 0.87745 0.91585 0.87753 0.87525 0.80995 0.89279 0.89594 0.86417 0.84398 0.83923 0.91498 0.91586 0.98110 0.97990 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.77 9.05 127.77 1.16 2.93 16 2 N -0.99 -22.78 2.89 -519.56 -1.50 -24.28 16 3 C 0.22 4.69 2.82 44.41 0.13 4.81 16 4 H 0.09 2.21 6.88 -2.39 -0.02 2.19 16 5 C -0.12 -1.80 5.33 30.75 0.16 -1.63 16 6 C -0.11 -0.98 5.90 30.75 0.18 -0.80 16 7 C -0.05 -0.39 5.90 30.01 0.18 -0.21 16 8 C 0.10 1.76 6.73 41.64 0.28 2.04 16 9 C -0.27 -5.78 4.54 -20.14 -0.09 -5.87 16 10 C 0.05 1.23 11.84 85.06 1.01 2.24 16 11 N -0.34 -9.30 12.59 -57.28 -0.72 -10.02 16 12 N -0.37 -7.04 4.00 -356.01 -1.42 -8.47 16 13 C 0.09 0.83 11.32 127.77 1.45 2.28 16 14 S 2.62 80.24 5.37 -56.49 -0.30 79.94 16 15 O -0.98 -34.88 17.09 -127.65 -2.18 -37.06 16 16 O -0.98 -34.68 16.57 -127.65 -2.12 -36.79 16 17 C -0.62 -20.06 5.78 71.98 0.42 -19.65 16 18 C -0.10 -4.37 5.16 30.59 0.16 -4.21 16 19 C 0.03 1.70 4.97 29.85 0.15 1.85 16 20 C -0.55 -32.12 9.11 25.60 0.23 -31.88 16 21 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 22 C 0.00 0.08 5.46 84.65 0.46 0.54 16 23 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 24 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 25 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.34 7.79 -2.39 -0.02 1.32 16 30 H 0.08 1.36 7.28 -2.38 -0.02 1.34 16 31 H 0.08 1.02 7.31 -2.39 -0.02 1.00 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.72 8.11 -2.39 -0.02 0.70 16 35 H 0.10 0.35 7.76 -2.38 -0.02 0.33 16 36 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.17 4.55 6.73 -2.91 -0.02 4.53 16 38 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.12 0.31 7.57 -2.39 -0.02 0.29 16 41 H 0.14 4.14 7.26 -2.39 -0.02 4.13 16 42 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 43 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.07 2.74 8.14 -2.38 -0.02 2.73 16 45 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -81.79 388.90 0.88 -80.92 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.95 Total: 13.07 kcal Atomic # 6 Polarization: -53.43 SS G_CDS: 5.86 Total: -47.57 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -3.37 Total: -99.66 kcal Atomic # 8 Polarization: -69.55 SS G_CDS: -4.30 Total: -73.85 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 80.24 SS G_CDS: -0.30 Total: 79.94 kcal Total: -81.79 0.88 -80.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125550671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.464 kcal (2) G-P(sol) polarization free energy of solvation -81.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds