Wall clock time and date at job start Wed Apr 1 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47637 * 2 1 4 4 C 1.46494 * 120.00444 * 269.72749 * 3 2 1 5 5 C 1.50694 * 109.47248 * 270.27463 * 4 3 2 6 6 H 1.07999 * 119.99904 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00385 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00419 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99411 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47279 * 90.00270 * 9 7 5 11 11 H 1.48505 * 109.46775 * 209.99777 * 9 7 5 12 12 H 1.48495 * 109.47628 * 329.99523 * 9 7 5 13 13 C 1.34784 * 119.99864 * 90.00039 * 3 2 1 14 14 O 1.21279 * 119.99925 * 179.72608 * 13 3 2 15 15 C 1.50700 * 119.99961 * 359.72839 * 13 3 2 16 16 N 1.46497 * 109.47128 * 180.02562 * 15 13 3 17 17 N 1.40588 * 127.45500 * 90.02248 * 16 15 13 18 18 N 1.28855 * 106.97851 * 179.97438 * 17 16 15 19 19 N 1.28396 * 110.62510 * 0.02562 * 18 17 16 20 20 C 1.32017 * 110.46749 * 359.75592 * 19 18 17 21 21 C 1.46836 * 126.58254 * 180.24710 * 20 19 18 22 22 C 1.34497 * 120.00258 * 0.15863 * 21 20 19 23 23 C 1.47315 * 120.00325 * 180.02562 * 22 21 20 24 24 C 1.39774 * 120.16273 * 359.72083 * 23 22 21 25 25 C 1.37915 * 119.83148 * 179.72347 * 24 23 22 26 26 C 1.38387 * 120.16218 * 0.58190 * 25 24 23 27 27 C 1.38386 * 120.33519 * 359.69161 * 26 25 24 28 28 C 1.37912 * 120.16555 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46747 * 300.00171 * 1 2 3 31 31 H 1.08996 * 109.47074 * 59.99445 * 1 2 3 32 32 H 1.09002 * 109.46747 * 239.99829 * 2 1 3 33 33 H 1.08996 * 109.47074 * 120.00555 * 2 1 3 34 34 H 1.09003 * 109.47006 * 30.27410 * 4 3 2 35 35 H 1.09004 * 109.47665 * 150.27102 * 4 3 2 36 36 H 0.96993 * 119.99970 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.46932 * 300.00223 * 15 13 3 38 38 H 1.08997 * 109.47392 * 59.99562 * 15 13 3 39 39 H 1.08005 * 120.00252 * 180.15969 * 21 20 19 40 40 H 1.08001 * 119.99988 * 0.02562 * 22 21 20 41 41 H 1.08003 * 120.08599 * 0.03008 * 24 23 22 42 42 H 1.07998 * 119.91837 * 180.29833 * 25 24 23 43 43 H 1.08001 * 119.82687 * 179.72178 * 26 25 24 44 44 H 1.07996 * 119.91670 * 180.02562 * 27 26 25 45 45 H 1.07997 * 120.08050 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2684 2.0697 -1.2686 5 6 3.6916 1.8266 -1.7003 6 1 4.3447 1.2202 -1.0904 7 6 4.1599 2.3784 -2.8739 8 7 5.4021 2.1667 -3.2503 9 14 3.0303 3.4280 -3.9283 10 1 3.1389 4.8481 -3.5081 11 1 3.4259 3.3021 -5.3542 12 1 1.6283 2.9681 -3.7613 13 6 2.2431 2.0164 1.1673 14 8 2.6522 3.1581 1.1673 15 6 1.9861 1.3081 2.4724 16 7 2.3041 2.2053 3.5859 17 7 1.4388 3.1047 4.2331 18 7 2.1251 3.6919 5.1521 19 7 3.3349 3.2618 5.1575 20 6 3.5032 2.3453 4.2224 21 6 4.7432 1.6181 3.9228 22 6 5.8554 1.8616 4.6388 23 6 7.0996 1.1325 4.3379 24 6 7.1266 0.1826 3.3129 25 6 8.2966 -0.4919 3.0333 26 6 9.4387 -0.2389 3.7726 27 6 9.4182 0.6960 4.7927 28 6 8.2572 1.3826 5.0802 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5876 1.6880 -2.0295 35 1 2.1056 3.1398 -1.1395 36 1 5.7316 2.5552 -4.0757 37 1 0.9367 1.0183 2.5279 38 1 2.6123 0.4180 2.5322 39 1 4.7622 0.8876 3.1275 40 1 5.8364 2.5918 5.4344 41 1 6.2348 -0.0191 2.7380 42 1 8.3203 -1.2226 2.2384 43 1 10.3508 -0.7735 3.5519 44 1 10.3136 0.8884 5.3651 45 1 8.2429 2.1122 5.8763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126783418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:44 Heat of formation + Delta-G solvation = 129.946366 kcal Electronic energy + Delta-G solvation = -28910.561905 eV Core-core repulsion = 24931.577209 eV Total energy + Delta-G solvation = -3978.984696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.71853 -39.54668 -39.34423 -35.85472 -35.37983 -34.59301 -32.84336 -32.03856 -31.14631 -30.61141 -29.71981 -29.01517 -27.31794 -24.59434 -23.59429 -23.21405 -22.79060 -22.36436 -21.66310 -19.65146 -18.96537 -17.67089 -17.22811 -17.09427 -16.88957 -16.00743 -15.82540 -15.42552 -15.32226 -15.15857 -14.60379 -14.21789 -13.93909 -13.77284 -13.62722 -13.53361 -13.16995 -13.14434 -12.73807 -12.61337 -12.44198 -12.23128 -12.07331 -11.93755 -11.61864 -11.42742 -11.41530 -11.16475 -11.13374 -10.95634 -10.83800 -10.77307 -10.62622 -10.29175 -9.89241 -9.69194 -9.32435 -9.11425 -8.70307 -8.26498 -8.02892 -6.20725 -4.20836 0.18225 1.22061 1.25851 1.77730 2.06906 2.81569 2.84909 3.20709 3.26261 3.29773 3.44304 3.74208 3.90417 4.16062 4.29209 4.45747 4.49157 4.63947 4.71231 4.79987 4.90591 4.94430 5.02772 5.12821 5.16647 5.25564 5.28898 5.33347 5.39201 5.48240 5.56994 5.73877 5.75828 5.81481 5.94121 5.94846 6.04148 6.17295 6.21061 6.33337 6.35412 6.47162 6.50563 6.76387 6.78759 7.04253 7.45756 7.87546 8.29427 8.54851 8.57702 8.80041 9.38755 10.92177 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007651 B = 0.003872 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3658.870820 B = 7229.646452 C = 9499.672759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 N -0.583 5.583 4 C 0.217 3.783 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.493 3.507 14 O -0.518 6.518 15 C 0.101 3.899 16 N -0.360 5.360 17 N -0.074 5.074 18 N -0.044 5.044 19 N -0.332 5.332 20 C 0.297 3.703 21 C -0.117 4.117 22 C -0.019 4.019 23 C -0.073 4.073 24 C -0.097 4.097 25 C -0.118 4.118 26 C -0.110 4.110 27 C -0.125 4.125 28 C -0.095 4.095 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.037 0.963 36 H 0.266 0.734 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.559 -10.722 13.993 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.023 4.023 3 N -0.315 5.315 4 C 0.097 3.903 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.190 1.190 13 C 0.276 3.724 14 O -0.393 6.393 15 C -0.025 4.025 16 N -0.156 5.156 17 N -0.059 5.059 18 N -0.039 5.039 19 N -0.185 5.185 20 C 0.024 3.976 21 C -0.138 4.138 22 C -0.042 4.042 23 C -0.074 4.074 24 C -0.115 4.115 25 C -0.136 4.136 26 C -0.128 4.128 27 C -0.143 4.143 28 C -0.113 4.113 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.043 -9.094 14.525 17.138 hybrid contribution -0.199 -0.156 -1.606 1.626 sum -0.156 -9.250 12.919 15.890 Atomic orbital electron populations 1.22262 0.96255 1.02047 1.02585 1.21577 0.93832 0.83377 1.03554 1.47936 1.63456 1.13582 1.06570 1.19733 0.97663 0.93453 0.79417 1.21237 0.95163 1.33410 1.07362 0.90689 1.24823 0.94966 0.95625 0.97307 1.69873 1.14933 1.44656 1.23639 0.86890 0.81384 0.81734 0.79934 1.19868 1.20902 1.19048 1.20140 0.79952 0.87438 0.84852 1.90786 1.44509 1.17557 1.86480 1.22006 1.05993 0.91263 0.83252 1.51345 1.08012 1.30390 1.25864 1.82437 1.14927 1.02743 1.05826 1.77824 0.98129 1.16117 1.11858 1.74804 1.10878 1.11911 1.20900 1.23756 0.88508 0.94878 0.90456 1.20840 0.88079 1.01880 1.02978 1.22264 0.90123 0.95199 0.96617 1.18935 0.93343 0.97650 0.97424 1.21474 0.98765 0.95104 0.96141 1.21161 0.92749 1.00084 0.99647 1.21326 0.98347 0.97655 0.95441 1.21098 0.98030 0.96940 0.98259 1.21346 0.92043 0.99007 0.98901 0.91500 0.92921 0.91830 0.88892 0.91466 0.94781 0.94514 0.92411 0.85017 0.85311 0.83915 0.84164 0.85381 0.85456 0.85903 0.85765 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 10.24 37.16 0.38 -1.39 16 2 C 0.10 1.25 5.93 -4.05 -0.02 1.22 16 3 N -0.58 -10.51 2.46 -175.07 -0.43 -10.94 16 4 C 0.22 4.94 4.23 -5.20 -0.02 4.92 16 5 C -0.53 -14.35 9.94 -34.44 -0.34 -14.69 16 6 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 7 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 9 Si 0.87 20.90 27.47 -169.99 -4.67 16.23 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 13 C 0.49 9.09 7.74 -10.98 -0.09 9.00 16 14 O -0.52 -12.43 16.01 5.56 0.09 -12.35 16 15 C 0.10 1.31 5.42 -5.20 -0.03 1.28 16 16 N -0.36 -5.73 3.21 -60.05 -0.19 -5.92 16 17 N -0.07 -1.33 13.92 60.35 0.84 -0.49 16 18 N -0.04 -0.82 13.36 60.35 0.81 -0.01 16 19 N -0.33 -5.76 11.77 32.27 0.38 -5.38 16 20 C 0.30 4.67 7.88 -154.61 -1.22 3.45 16 21 C -0.12 -1.49 9.20 -37.43 -0.34 -1.84 16 22 C -0.02 -0.22 9.55 -37.21 -0.36 -0.57 16 23 C -0.07 -0.81 5.87 -105.06 -0.62 -1.43 16 24 C -0.10 -1.07 9.41 -39.13 -0.37 -1.44 16 25 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 26 C -0.11 -1.00 10.04 -39.47 -0.40 -1.40 16 27 C -0.13 -1.11 10.03 -39.65 -0.40 -1.51 16 28 C -0.09 -0.92 9.79 -39.13 -0.38 -1.30 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.50 7.20 -51.93 -0.37 0.13 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.23 8.07 -51.93 -0.42 0.81 16 33 H 0.07 0.60 6.44 -51.93 -0.33 0.27 16 34 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 35 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.13 1.31 7.17 -51.93 -0.37 0.93 16 38 H 0.13 1.16 6.85 -51.93 -0.36 0.80 16 39 H 0.14 1.60 5.66 -52.48 -0.30 1.30 16 40 H 0.14 1.54 7.75 -52.49 -0.41 1.13 16 41 H 0.13 1.32 6.17 -52.48 -0.32 1.00 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -36.48 387.84 -6.99 -43.48 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.74 Total: 0.50 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -4.70 Total: -5.28 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 2.18 Total: -48.42 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.48 -6.99 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126783418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.421 kcal (2) G-P(sol) polarization free energy of solvation -36.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds