Wall clock time and date at job start Wed Apr 1 2020 00:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47301 * 2 1 4 4 C 1.50706 * 109.46580 * 119.99499 * 2 1 3 5 5 H 1.08002 * 119.99694 * 120.00080 * 4 2 1 6 6 C 1.37879 * 120.00095 * 300.00081 * 4 2 1 7 7 N 1.31516 * 119.99634 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00067 * 359.97438 * 6 4 2 9 9 H 1.48508 * 109.46816 * 90.00257 * 8 6 4 10 10 H 1.48501 * 109.47435 * 209.99786 * 8 6 4 11 11 H 1.48496 * 109.47247 * 330.00355 * 8 6 4 12 12 N 1.46899 * 109.47438 * 239.99243 * 2 1 3 13 13 C 1.46896 * 111.00197 * 306.05284 * 12 2 1 14 14 C 1.46896 * 110.99724 * 70.00667 * 12 2 1 15 15 C 1.50697 * 109.47289 * 169.99730 * 14 12 2 16 16 N 1.30442 * 126.42413 * 96.82690 * 15 14 12 17 17 N 1.28528 * 110.10958 * 179.82325 * 16 15 14 18 18 C 1.31488 * 109.89426 * 0.45039 * 17 16 15 19 19 N 1.36459 * 106.77751 * 359.73321 * 18 17 16 20 20 C 1.38911 * 120.92711 * 179.97438 * 19 18 17 21 21 C 1.38668 * 121.31214 * 179.97438 * 20 19 18 22 22 C 1.38062 * 119.87790 * 180.02562 * 21 20 19 23 23 C 1.38612 * 120.59448 * 0.03905 * 22 21 20 24 24 C 1.37892 * 120.34855 * 0.02562 * 23 22 21 25 25 C 1.39362 * 119.60732 * 359.97438 * 24 23 22 26 26 C 1.47417 * 121.32650 * 180.02562 * 25 24 23 27 27 O 1.21637 * 120.57947 * 359.95134 * 26 25 24 28 28 N 1.34944 * 118.85033 * 179.97438 * 26 25 24 29 29 C 1.46499 * 119.51015 * 180.02562 * 28 26 25 30 30 H 1.08997 * 109.47538 * 300.00911 * 1 2 3 31 31 H 1.09000 * 109.46516 * 60.00226 * 1 2 3 32 32 H 1.09000 * 109.47301 * 180.02562 * 1 2 3 33 33 H 0.96999 * 119.99530 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46955 * 59.99667 * 13 12 2 35 35 H 1.08997 * 109.47145 * 179.97438 * 13 12 2 36 36 H 1.09005 * 109.47135 * 299.99773 * 13 12 2 37 37 H 1.09004 * 109.47073 * 289.99930 * 14 12 2 38 38 H 1.08999 * 109.47331 * 49.99776 * 14 12 2 39 39 H 1.08005 * 120.06258 * 0.06039 * 21 20 19 40 40 H 1.07995 * 119.70630 * 180.02562 * 22 21 20 41 41 H 1.08007 * 119.82892 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.19555 * 179.97438 * 24 23 22 43 43 H 1.09005 * 109.46613 * 269.97598 * 29 28 26 44 44 H 1.08996 * 109.47172 * 29.97388 * 29 28 26 45 45 H 1.08995 * 109.47136 * 149.98138 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6990 -0.2392 2.4828 7 7 2.1369 -0.8595 3.5567 8 14 0.6257 1.2800 2.6541 9 1 -0.8022 0.8747 2.6992 10 1 0.9769 1.9956 3.9070 11 1 0.8491 2.1774 1.4922 12 7 2.0197 -0.6926 -1.1993 13 6 1.4343 -2.0355 -1.3077 14 6 1.7531 0.0970 -2.4089 15 6 2.4777 -0.5165 -3.5792 16 7 1.9728 -1.3362 -4.4594 17 7 2.8667 -1.6620 -5.3236 18 6 4.0049 -1.0704 -5.0348 19 7 3.7872 -0.3235 -3.9137 20 6 4.8082 0.4302 -3.3487 21 6 4.5957 1.1925 -2.2099 22 6 5.6316 1.9310 -1.6735 23 6 6.8858 1.9192 -2.2635 24 6 7.1155 1.1682 -3.3970 25 6 6.0781 0.4185 -3.9482 26 6 6.2816 -0.3980 -5.1585 27 8 7.3675 -0.4336 -5.7056 28 7 5.2423 -1.1050 -5.6494 29 6 5.4286 -1.9218 -6.8512 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.9028 -0.5278 4.4376 34 1 0.3491 -1.9549 -1.3693 35 1 1.8134 -2.5259 -2.2043 36 1 1.7058 -2.6222 -0.4299 37 1 0.6816 0.1051 -2.6087 38 1 2.1027 1.1187 -2.2603 39 1 3.6219 1.2081 -1.7432 40 1 5.4632 2.5233 -0.7863 41 1 7.6872 2.5018 -1.8337 42 1 8.0936 1.1612 -3.8549 43 1 5.2064 -1.3237 -7.7350 44 1 6.4606 -2.2694 -6.8979 45 1 4.7574 -2.7798 -6.8150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129569309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:59 Heat of formation + Delta-G solvation = 123.425471 kcal Electronic energy + Delta-G solvation = -30554.234078 eV Core-core repulsion = 26574.966614 eV Total energy + Delta-G solvation = -3979.267463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.73937 -40.76178 -39.02425 -37.77163 -36.54533 -35.07874 -33.03727 -31.90483 -31.07363 -30.18753 -29.38535 -27.91210 -27.36689 -25.42741 -24.63631 -24.08794 -23.35764 -23.10858 -20.80032 -19.82298 -19.60102 -19.08810 -17.44535 -17.29546 -16.82604 -16.63008 -16.02455 -15.69542 -15.30009 -15.00058 -14.71916 -14.52382 -14.47450 -14.03273 -13.90973 -13.76044 -13.19766 -13.02149 -12.87694 -12.67188 -12.40281 -12.31484 -11.91866 -11.70112 -11.69654 -11.54389 -11.38370 -11.28635 -11.02566 -10.98256 -10.84046 -10.50031 -10.31074 -10.16536 -9.66353 -9.44215 -9.23992 -8.85739 -8.70662 -8.50102 -7.66548 -6.17591 -4.17324 0.27390 0.64901 1.57729 1.67917 2.26858 2.31425 2.74815 3.16191 3.23285 3.29119 3.49641 3.72190 3.89423 4.24700 4.27521 4.43710 4.51658 4.73101 4.79020 4.90193 4.94524 5.04386 5.09970 5.13796 5.15258 5.35949 5.39807 5.45457 5.60272 5.72512 5.83733 5.91965 5.93033 6.01545 6.10370 6.12532 6.14956 6.17565 6.28688 6.38014 6.44458 6.55282 6.78162 6.82169 7.00469 7.36908 7.39967 7.65540 7.77528 8.46750 8.49203 8.90508 9.42714 10.95211 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014396 B = 0.003931 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.573249 B = 7121.786144 C = 8400.638881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.184 3.816 3 H 0.040 0.960 4 C -0.503 4.503 5 H 0.083 0.917 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.884 3.116 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.268 1.268 12 N -0.520 5.520 13 C 0.031 3.969 14 C 0.122 3.878 15 C 0.221 3.779 16 N -0.257 5.257 17 N -0.293 5.293 18 C 0.399 3.601 19 N -0.426 5.426 20 C 0.173 3.827 21 C -0.123 4.123 22 C -0.053 4.053 23 C -0.131 4.131 24 C -0.032 4.032 25 C -0.166 4.166 26 C 0.569 3.431 27 O -0.503 6.503 28 N -0.509 5.509 29 C 0.083 3.917 30 H 0.047 0.953 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.265 0.735 34 H 0.029 0.971 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.603 5.984 -15.121 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.077 3.923 3 H 0.057 0.943 4 C -0.542 4.542 5 H 0.101 0.899 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.245 5.245 13 C -0.117 4.117 14 C -0.008 4.008 15 C -0.045 4.045 16 N -0.095 5.095 17 N -0.139 5.139 18 C 0.046 3.954 19 N -0.116 5.116 20 C 0.077 3.923 21 C -0.142 4.142 22 C -0.072 4.072 23 C -0.150 4.150 24 C -0.051 4.051 25 C -0.171 4.171 26 C 0.360 3.640 27 O -0.377 6.377 28 N -0.238 5.238 29 C -0.058 4.058 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.177 0.823 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.165 0.835 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.682 4.969 -15.969 18.010 hybrid contribution -0.709 1.483 0.852 1.852 sum 5.973 6.452 -15.117 17.488 Atomic orbital electron populations 1.22863 1.01208 1.01649 0.99181 1.19834 0.89166 0.94997 0.88343 0.94251 1.20834 1.31882 1.13981 0.87458 0.89938 1.24896 0.95754 0.96553 0.95770 1.69871 1.45377 1.40139 0.97942 0.86926 0.80766 0.83805 0.77002 1.20659 1.22382 1.19357 1.62308 1.59110 1.02940 1.00130 1.22330 0.96978 0.90378 1.01972 1.20716 0.97450 0.96664 0.86001 1.24856 0.79367 1.00078 1.00197 1.74234 1.22114 1.11453 1.01670 1.74663 0.94404 1.23020 1.21848 1.21341 0.90328 0.96220 0.87557 1.43518 1.10273 1.35765 1.22026 1.17814 0.85719 0.93767 0.95010 1.21374 1.02766 0.96336 0.93746 1.21443 0.91708 0.95636 0.98422 1.21324 0.97813 1.00039 0.95821 1.21026 0.97738 0.92159 0.94217 1.19450 0.93663 1.05378 0.98650 1.18089 0.82998 0.78926 0.83996 1.90843 1.22932 1.63395 1.60509 1.44318 1.05122 1.46013 1.28387 1.22001 1.04592 0.95269 0.83904 0.93419 0.95098 0.91937 0.92499 0.95254 0.93286 0.89933 0.90577 0.88842 0.82345 0.83670 0.84139 0.83496 0.90825 0.88803 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.70 7.92 37.16 0.29 -3.40 16 2 C 0.18 3.79 1.90 -68.86 -0.13 3.66 16 3 H 0.04 0.81 6.99 -51.93 -0.36 0.44 16 4 C -0.50 -12.81 8.55 -34.44 -0.29 -13.10 16 5 H 0.08 2.36 7.35 -52.49 -0.39 1.97 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 7 N -0.90 -25.76 13.96 55.43 0.77 -24.99 16 8 Si 0.88 20.11 24.37 -169.99 -4.14 15.96 16 9 H -0.28 -6.31 6.87 56.52 0.39 -5.92 16 10 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -5.65 6.53 56.52 0.37 -5.29 16 12 N -0.52 -9.56 4.42 -237.74 -1.05 -10.61 16 13 C 0.03 0.58 8.64 60.06 0.52 1.10 16 14 C 0.12 1.88 4.02 -4.98 -0.02 1.86 16 15 C 0.22 3.57 6.59 -154.09 -1.02 2.55 16 16 N -0.26 -4.43 11.73 32.97 0.39 -4.05 16 17 N -0.29 -4.88 11.99 30.29 0.36 -4.52 16 18 C 0.40 6.18 8.28 -319.06 -2.64 3.54 16 19 N -0.43 -6.63 3.01 -58.27 -0.18 -6.81 16 20 C 0.17 2.46 6.65 -83.67 -0.56 1.90 16 21 C -0.12 -1.60 9.46 -39.49 -0.37 -1.97 16 22 C -0.05 -0.56 10.02 -39.51 -0.40 -0.95 16 23 C -0.13 -1.19 10.03 -39.57 -0.40 -1.59 16 24 C -0.03 -0.34 9.64 -39.29 -0.38 -0.72 16 25 C -0.17 -2.19 5.88 -104.91 -0.62 -2.81 16 26 C 0.57 7.93 7.64 -12.45 -0.10 7.84 16 27 O -0.50 -7.44 16.10 5.24 0.08 -7.36 16 28 N -0.51 -6.90 3.06 -125.29 -0.38 -7.28 16 29 C 0.08 0.84 10.35 59.85 0.62 1.46 16 30 H 0.05 0.98 3.27 -51.93 -0.17 0.81 16 31 H 0.03 0.50 6.91 -51.93 -0.36 0.15 16 32 H 0.06 1.22 6.33 -51.93 -0.33 0.89 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.03 0.51 6.21 -51.93 -0.32 0.19 16 35 H 0.05 0.89 6.81 -51.93 -0.35 0.53 16 36 H 0.08 1.68 6.86 -51.93 -0.36 1.33 16 37 H 0.08 1.11 7.06 -51.93 -0.37 0.75 16 38 H 0.09 1.27 5.72 -51.93 -0.30 0.97 16 39 H 0.16 2.20 4.40 -52.48 -0.23 1.97 16 40 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 42 H 0.15 1.32 7.76 -52.48 -0.41 0.92 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.86 7.41 -51.93 -0.38 0.48 16 45 H 0.09 0.88 7.88 -51.93 -0.41 0.48 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -31.04 353.69 -9.58 -40.62 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.18 Total: 2.51 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -5.58 Total: 1.18 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.09 Total: -58.25 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.08 Total: -7.36 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.14 Total: 15.96 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.04 -9.58 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129569309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.048 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds