Wall clock time and date at job start Wed Apr 1 2020 00:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47301 * 2 1 4 4 C 1.50706 * 109.46580 * 119.99499 * 2 1 3 5 5 H 1.08002 * 119.99694 * 120.00080 * 4 2 1 6 6 C 1.37879 * 120.00095 * 300.00081 * 4 2 1 7 7 N 1.31516 * 119.99634 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00067 * 359.97438 * 6 4 2 9 9 H 1.48508 * 109.46816 * 90.00257 * 8 6 4 10 10 H 1.48501 * 109.47435 * 209.99786 * 8 6 4 11 11 H 1.48496 * 109.47247 * 330.00355 * 8 6 4 12 12 N 1.46899 * 109.47438 * 239.99243 * 2 1 3 13 13 C 1.46896 * 111.00197 * 306.05284 * 12 2 1 14 14 C 1.46896 * 110.99724 * 70.00667 * 12 2 1 15 15 C 1.50697 * 109.47289 * 169.99730 * 14 12 2 16 16 N 1.30442 * 126.42413 * 96.82690 * 15 14 12 17 17 N 1.28528 * 110.10958 * 179.82325 * 16 15 14 18 18 C 1.31488 * 109.89426 * 0.45039 * 17 16 15 19 19 N 1.36459 * 106.77751 * 359.73321 * 18 17 16 20 20 C 1.38911 * 120.92711 * 179.97438 * 19 18 17 21 21 C 1.38668 * 121.31214 * 179.97438 * 20 19 18 22 22 C 1.38062 * 119.87790 * 180.02562 * 21 20 19 23 23 C 1.38612 * 120.59448 * 0.03905 * 22 21 20 24 24 C 1.37892 * 120.34855 * 0.02562 * 23 22 21 25 25 C 1.39362 * 119.60732 * 359.97438 * 24 23 22 26 26 C 1.47417 * 121.32650 * 180.02562 * 25 24 23 27 27 O 1.21637 * 120.57947 * 359.95134 * 26 25 24 28 28 N 1.34944 * 118.85033 * 179.97438 * 26 25 24 29 29 C 1.46499 * 119.51015 * 180.02562 * 28 26 25 30 30 H 1.08997 * 109.47538 * 300.00911 * 1 2 3 31 31 H 1.09000 * 109.46516 * 60.00226 * 1 2 3 32 32 H 1.09000 * 109.47301 * 180.02562 * 1 2 3 33 33 H 0.96999 * 119.99530 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46955 * 59.99667 * 13 12 2 35 35 H 1.08997 * 109.47145 * 179.97438 * 13 12 2 36 36 H 1.09005 * 109.47135 * 299.99773 * 13 12 2 37 37 H 1.09004 * 109.47073 * 289.99930 * 14 12 2 38 38 H 1.08999 * 109.47331 * 49.99776 * 14 12 2 39 39 H 1.08005 * 120.06258 * 0.06039 * 21 20 19 40 40 H 1.07995 * 119.70630 * 180.02562 * 22 21 20 41 41 H 1.08007 * 119.82892 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.19555 * 179.97438 * 24 23 22 43 43 H 1.09005 * 109.46613 * 269.97598 * 29 28 26 44 44 H 1.08996 * 109.47172 * 29.97388 * 29 28 26 45 45 H 1.08995 * 109.47136 * 149.98138 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6990 -0.2392 2.4828 7 7 2.1369 -0.8595 3.5567 8 14 0.6257 1.2800 2.6541 9 1 -0.8022 0.8747 2.6992 10 1 0.9769 1.9956 3.9070 11 1 0.8491 2.1774 1.4922 12 7 2.0197 -0.6926 -1.1993 13 6 1.4343 -2.0355 -1.3077 14 6 1.7531 0.0970 -2.4089 15 6 2.4777 -0.5165 -3.5792 16 7 1.9728 -1.3362 -4.4594 17 7 2.8667 -1.6620 -5.3236 18 6 4.0049 -1.0704 -5.0348 19 7 3.7872 -0.3235 -3.9137 20 6 4.8082 0.4302 -3.3487 21 6 4.5957 1.1925 -2.2099 22 6 5.6316 1.9310 -1.6735 23 6 6.8858 1.9192 -2.2635 24 6 7.1155 1.1682 -3.3970 25 6 6.0781 0.4185 -3.9482 26 6 6.2816 -0.3980 -5.1585 27 8 7.3675 -0.4336 -5.7056 28 7 5.2423 -1.1050 -5.6494 29 6 5.4286 -1.9218 -6.8512 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.9028 -0.5278 4.4376 34 1 0.3491 -1.9549 -1.3693 35 1 1.8134 -2.5259 -2.2043 36 1 1.7058 -2.6222 -0.4299 37 1 0.6816 0.1051 -2.6087 38 1 2.1027 1.1187 -2.2603 39 1 3.6219 1.2081 -1.7432 40 1 5.4632 2.5233 -0.7863 41 1 7.6872 2.5018 -1.8337 42 1 8.0936 1.1612 -3.8549 43 1 5.2064 -1.3237 -7.7350 44 1 6.4606 -2.2694 -6.8979 45 1 4.7574 -2.7798 -6.8150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129569309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:59 Heat of formation + Delta-G solvation = 105.747538 kcal Electronic energy + Delta-G solvation = -30555.000650 eV Core-core repulsion = 26574.966614 eV Total energy + Delta-G solvation = -3980.034036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.89635 -41.80493 -39.99505 -39.24476 -37.63052 -36.14097 -34.82392 -33.04523 -32.39707 -31.15532 -30.85362 -28.81257 -28.69845 -27.19280 -26.02203 -25.06741 -24.62168 -24.13255 -21.98340 -21.22334 -20.75721 -20.15746 -18.68541 -18.47550 -18.39859 -17.74688 -17.28642 -16.86616 -16.60257 -16.03008 -15.92624 -15.91382 -15.52999 -15.36903 -15.06125 -14.84273 -14.59690 -14.37270 -14.00643 -13.99571 -13.52326 -13.49544 -13.24842 -13.07755 -12.95572 -12.86432 -12.67732 -12.55597 -12.34208 -12.27558 -12.04068 -11.93184 -11.86919 -11.46900 -11.36698 -11.08136 -10.70961 -10.35409 -9.84607 -9.61555 -9.12555 -8.21032 -6.24787 -0.68258 -0.32097 0.51224 0.62629 1.17437 1.25558 1.38958 1.41720 1.52838 1.62714 2.38074 2.58145 2.69707 2.81658 3.07596 3.14325 3.28849 3.49110 3.58186 3.76447 4.05414 4.12584 4.17813 4.19768 4.32901 4.33997 4.38308 4.40037 4.48855 4.56022 4.63549 4.64854 4.66324 4.78046 4.81602 4.84502 4.95022 5.01801 5.10922 5.19544 5.27460 5.31132 5.44294 5.58280 5.63345 5.76324 5.96802 6.19127 6.31657 6.61579 6.82112 7.25221 7.39566 8.95748 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014396 B = 0.003931 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.573249 B = 7121.786144 C = 8400.638881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.189 3.811 3 H 0.055 0.945 4 C -0.498 4.498 5 H 0.034 0.966 6 C 0.015 3.985 7 N -0.951 5.951 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.304 1.304 11 H -0.232 1.232 12 N -0.530 5.530 13 C 0.043 3.957 14 C 0.127 3.873 15 C 0.216 3.784 16 N -0.276 5.276 17 N -0.310 5.310 18 C 0.398 3.602 19 N -0.428 5.428 20 C 0.147 3.853 21 C -0.136 4.136 22 C -0.051 4.051 23 C -0.113 4.113 24 C -0.030 4.030 25 C -0.182 4.182 26 C 0.566 3.434 27 O -0.516 6.516 28 N -0.511 5.511 29 C 0.078 3.922 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.264 0.736 34 H 0.040 0.960 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.149 0.851 40 H 0.169 0.831 41 H 0.180 0.820 42 H 0.164 0.836 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.822 8.813 -16.128 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.082 3.918 3 H 0.073 0.927 4 C -0.536 4.536 5 H 0.052 0.948 6 C -0.182 4.182 7 N -0.592 5.592 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.233 1.233 11 H -0.156 1.156 12 N -0.254 5.254 13 C -0.105 4.105 14 C -0.003 4.003 15 C -0.051 4.051 16 N -0.114 5.114 17 N -0.157 5.157 18 C 0.044 3.956 19 N -0.118 5.118 20 C 0.052 3.948 21 C -0.156 4.156 22 C -0.070 4.070 23 C -0.131 4.131 24 C -0.049 4.049 25 C -0.188 4.188 26 C 0.358 3.642 27 O -0.391 6.391 28 N -0.240 5.240 29 C -0.062 4.062 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.167 0.833 40 H 0.186 0.814 41 H 0.198 0.802 42 H 0.181 0.819 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.910 7.802 -17.023 19.960 hybrid contribution -0.614 0.539 1.128 1.393 sum 6.296 8.340 -15.895 19.022 Atomic orbital electron populations 1.22777 0.99684 1.01703 1.00557 1.19645 0.90161 0.94922 0.87092 0.92704 1.21044 1.30376 1.12420 0.89768 0.94788 1.25729 0.97327 0.99940 0.95250 1.70047 1.47907 1.42601 0.98604 0.85907 0.78682 0.80266 0.77765 1.20231 1.23258 1.15560 1.62104 1.59485 1.02949 1.00888 1.22144 0.97574 0.90427 1.00390 1.20780 0.98323 0.97044 0.84156 1.24891 0.79815 1.00120 1.00268 1.74160 1.22832 1.12078 1.02284 1.74581 0.94887 1.23881 1.22341 1.21487 0.90653 0.95831 0.87638 1.43607 1.10409 1.35775 1.21968 1.18050 0.85810 0.94901 0.96086 1.21432 1.03276 0.97179 0.93702 1.21805 0.91524 0.94845 0.98803 1.21758 0.98181 0.98716 0.94451 1.21358 0.97686 0.91398 0.94490 1.19647 0.94128 1.06232 0.98752 1.18292 0.82825 0.78898 0.84215 1.90827 1.23200 1.64041 1.61046 1.44541 1.04390 1.46144 1.28932 1.22223 1.05227 0.95378 0.83348 0.94203 0.91348 0.92750 0.92727 0.94119 0.93265 0.93026 0.89171 0.86598 0.83329 0.81378 0.80221 0.81878 0.89257 0.87952 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.78 7.92 71.98 0.57 -6.21 16 2 C 0.19 7.49 1.90 44.17 0.08 7.58 16 3 H 0.06 2.05 6.99 -2.39 -0.02 2.03 16 4 C -0.50 -25.70 8.55 25.60 0.22 -25.49 16 5 H 0.03 2.04 7.35 -2.91 -0.02 2.02 16 6 C 0.01 0.78 5.45 84.65 0.46 1.24 16 7 N -0.95 -56.45 13.96 21.45 0.30 -56.15 16 8 Si 0.95 40.40 24.37 68.60 1.67 42.07 16 9 H -0.28 -11.54 6.87 99.48 0.68 -10.85 16 10 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.23 -8.51 6.53 99.48 0.65 -7.86 16 12 N -0.53 -19.00 4.42 -906.06 -4.00 -23.00 16 13 C 0.04 1.60 8.64 127.69 1.10 2.70 16 14 C 0.13 3.64 4.02 85.56 0.34 3.98 16 15 C 0.22 6.79 6.59 137.66 0.91 7.70 16 16 N -0.28 -9.41 11.73 -49.59 -0.58 -9.99 16 17 N -0.31 -10.33 11.99 -58.09 -0.70 -11.03 16 18 C 0.40 12.26 8.28 260.18 2.16 14.42 16 19 N -0.43 -13.12 3.01 -338.27 -1.02 -14.14 16 20 C 0.15 4.03 6.65 38.66 0.26 4.28 16 21 C -0.14 -3.31 9.46 22.33 0.21 -3.10 16 22 C -0.05 -0.91 10.02 22.32 0.22 -0.68 16 23 C -0.11 -1.62 10.03 22.28 0.22 -1.39 16 24 C -0.03 -0.56 9.64 22.46 0.22 -0.34 16 25 C -0.18 -4.58 5.88 -20.05 -0.12 -4.70 16 26 C 0.57 15.35 7.64 86.63 0.66 16.01 16 27 O -0.52 -14.74 16.10 -4.15 -0.07 -14.81 16 28 N -0.51 -13.62 3.06 -668.45 -2.04 -15.67 16 29 C 0.08 1.52 10.35 127.77 1.32 2.84 16 30 H 0.04 1.50 3.27 -2.39 -0.01 1.49 16 31 H 0.07 1.95 6.91 -2.39 -0.02 1.94 16 32 H 0.05 2.02 6.33 -2.39 -0.02 2.01 16 33 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.04 1.40 6.21 -2.39 -0.01 1.38 16 35 H 0.05 1.81 6.81 -2.39 -0.02 1.79 16 36 H 0.05 2.21 6.86 -2.38 -0.02 2.19 16 37 H 0.09 2.36 7.06 -2.39 -0.02 2.35 16 38 H 0.12 2.81 5.72 -2.39 -0.01 2.80 16 39 H 0.15 3.85 4.40 -2.91 -0.01 3.84 16 40 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.16 2.46 7.76 -2.91 -0.02 2.44 16 43 H 0.09 1.44 8.14 -2.38 -0.02 1.43 16 44 H 0.10 1.81 7.41 -2.39 -0.02 1.79 16 45 H 0.10 1.80 7.88 -2.39 -0.02 1.78 16 Total: -1.00 -69.98 353.69 3.38 -66.59 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.98 Total: 17.29 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 8.84 Total: 18.84 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -8.04 Total: -129.98 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.07 Total: -14.81 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.67 Total: 42.07 kcal Total: -69.98 3.38 -66.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129569309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.342 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds