Wall clock time and date at job start Wed Apr 1 2020 00:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46826 * 2 1 4 4 C 1.50699 * 109.47000 * 240.00288 * 2 1 3 5 5 H 1.08006 * 119.99728 * 239.99535 * 4 2 1 6 6 C 1.37876 * 120.00179 * 60.00299 * 4 2 1 7 7 N 1.31512 * 119.99937 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00031 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46797 * 269.99700 * 8 6 4 10 10 H 1.48503 * 109.46995 * 29.99507 * 8 6 4 11 11 H 1.48499 * 109.47215 * 149.99456 * 8 6 4 12 12 N 1.46896 * 109.47105 * 119.99894 * 2 1 3 13 13 C 1.46897 * 110.99788 * 58.95966 * 12 2 1 14 14 C 1.46896 * 111.00293 * 295.00258 * 12 2 1 15 15 C 1.50700 * 109.47164 * 190.00288 * 14 12 2 16 16 N 1.30445 * 126.42299 * 262.54643 * 15 14 12 17 17 N 1.28527 * 110.10527 * 179.85697 * 16 15 14 18 18 C 1.31483 * 109.89923 * 0.42005 * 17 16 15 19 19 N 1.36463 * 106.77848 * 359.74832 * 18 17 16 20 20 C 1.38908 * 120.92541 * 179.97438 * 19 18 17 21 21 C 1.38669 * 121.31439 * 180.02562 * 20 19 18 22 22 C 1.38064 * 119.87603 * 179.97438 * 21 20 19 23 23 C 1.38615 * 120.59730 * 0.02562 * 22 21 20 24 24 C 1.37886 * 120.34419 * 0.02703 * 23 22 21 25 25 C 1.39362 * 119.61210 * 359.97223 * 24 23 22 26 26 C 1.47417 * 121.32618 * 180.02562 * 25 24 23 27 27 O 1.21632 * 120.57829 * 359.97438 * 26 25 24 28 28 N 1.34932 * 118.85099 * 179.97438 * 26 25 24 29 29 C 1.46500 * 119.51347 * 179.97438 * 28 26 25 30 30 H 1.09000 * 109.47499 * 60.00127 * 1 2 3 31 31 H 1.09007 * 109.47012 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47603 * 299.99996 * 1 2 3 33 33 H 0.97001 * 119.99975 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47748 * 59.99867 * 13 12 2 35 35 H 1.08998 * 109.47312 * 180.02562 * 13 12 2 36 36 H 1.09004 * 109.47309 * 299.99463 * 13 12 2 37 37 H 1.09008 * 109.46979 * 310.00243 * 14 12 2 38 38 H 1.08997 * 109.47332 * 69.99603 * 14 12 2 39 39 H 1.07998 * 120.06095 * 359.97438 * 21 20 19 40 40 H 1.07997 * 119.70020 * 180.02562 * 22 21 20 41 41 H 1.07995 * 119.82545 * 179.97438 * 23 22 21 42 42 H 1.08008 * 120.19416 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.46995 * 0.02562 * 29 28 26 44 44 H 1.09000 * 109.46954 * 120.00079 * 29 28 26 45 45 H 1.08993 * 109.47612 * 240.00581 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.6297 -0.5457 -4.4124 10 1 2.4858 -2.5661 -3.7120 11 1 1.3431 -0.9491 -5.1121 12 7 2.0196 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6487 0.0391 2.4180 15 6 2.3679 -0.5571 3.6005 16 7 1.8844 -1.4284 4.4423 17 7 2.7677 -1.7244 5.3279 18 6 3.8712 -1.0456 5.1037 19 7 3.6458 -0.2823 3.9951 20 6 4.6315 0.5590 3.4951 21 6 4.4110 1.3385 2.3697 22 6 5.4118 2.1648 1.8985 23 6 6.6390 2.2234 2.5404 24 6 6.8768 1.4548 3.6602 25 6 5.8748 0.6167 4.1457 26 6 6.0880 -0.2207 5.3400 27 8 7.1512 -0.1974 5.9303 28 7 5.0832 -1.0136 5.7671 29 6 5.2795 -1.8523 6.9521 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7082 1.1610 -3.4844 34 1 1.8763 -2.6150 0.3646 35 1 1.9053 -2.5655 2.1438 36 1 0.4385 -2.0743 1.2639 37 1 1.9296 1.0870 2.3124 38 1 0.5722 -0.0345 2.5725 39 1 3.4583 1.2993 1.8626 40 1 5.2368 2.7709 1.0220 41 1 7.4131 2.8738 2.1609 42 1 7.8341 1.5021 4.1582 43 1 6.2853 -1.6991 7.3431 44 1 4.5487 -1.5814 7.7140 45 1 5.1505 -2.9001 6.6812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129569549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:02 Heat of formation + Delta-G solvation = 113.981757 kcal Electronic energy + Delta-G solvation = -30477.478862 eV Core-core repulsion = 26497.801888 eV Total energy + Delta-G solvation = -3979.676973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.67918 -40.73641 -38.99140 -37.52154 -36.49769 -35.02084 -33.08882 -31.85264 -30.77643 -30.14665 -28.64748 -27.87206 -27.28836 -25.31065 -24.55421 -24.04342 -23.29742 -23.07123 -20.77686 -19.80482 -19.53085 -19.01327 -17.40028 -17.23873 -16.70229 -16.34149 -15.87689 -15.62676 -15.07572 -14.95192 -14.67665 -14.49905 -14.20866 -14.13239 -13.90605 -13.57248 -13.01492 -12.91231 -12.76156 -12.61164 -12.33283 -11.91606 -11.66320 -11.56943 -11.51220 -11.25024 -11.16993 -10.99725 -10.89702 -10.80700 -10.75585 -10.63699 -10.29504 -10.14782 -10.00893 -9.41275 -9.06112 -8.81148 -8.51200 -8.45307 -7.46430 -6.13797 -4.17934 0.30393 0.68772 1.62776 1.72147 2.31941 2.35365 2.80329 3.23617 3.31076 3.34638 3.52860 3.75560 3.95130 4.28375 4.37078 4.51815 4.58345 4.80506 4.93766 4.95533 4.99363 5.09781 5.13597 5.19678 5.22813 5.40257 5.47425 5.49812 5.73381 5.80643 5.90701 5.97489 6.06040 6.10866 6.17017 6.31656 6.35208 6.47931 6.54190 6.69656 6.80997 6.86998 6.92260 7.23729 7.39477 7.56537 7.65720 7.86243 8.17491 8.36391 8.53569 8.87101 9.47857 10.93052 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.003783 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.579102 B = 7400.674993 C = 8575.528625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.213 3.787 3 H 0.041 0.959 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.532 5.532 13 C 0.034 3.966 14 C 0.125 3.875 15 C 0.225 3.775 16 N -0.260 5.260 17 N -0.292 5.292 18 C 0.396 3.604 19 N -0.427 5.427 20 C 0.174 3.826 21 C -0.122 4.122 22 C -0.053 4.053 23 C -0.133 4.133 24 C -0.033 4.033 25 C -0.167 4.167 26 C 0.570 3.430 27 O -0.506 6.506 28 N -0.509 5.509 29 C 0.081 3.919 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.009 0.991 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.028 0.972 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.161 0.839 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.511 3.161 12.812 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.108 3.892 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.257 5.257 13 C -0.114 4.114 14 C -0.006 4.006 15 C -0.041 4.041 16 N -0.097 5.097 17 N -0.138 5.138 18 C 0.042 3.958 19 N -0.117 5.117 20 C 0.078 3.922 21 C -0.142 4.142 22 C -0.072 4.072 23 C -0.151 4.151 24 C -0.052 4.052 25 C -0.173 4.173 26 C 0.361 3.639 27 O -0.380 6.380 28 N -0.238 5.238 29 C -0.060 4.060 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.179 0.821 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.120 0.880 44 H 0.098 0.902 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.518 2.247 13.693 16.282 hybrid contribution 0.185 0.267 -1.444 1.480 sum 8.703 2.514 12.249 15.234 Atomic orbital electron populations 1.22446 1.00377 0.99923 1.00822 1.19369 0.90167 0.94348 0.85319 0.94129 1.21038 1.30923 1.12681 0.89363 0.91877 1.24882 0.95054 0.95073 0.98945 1.69865 1.36682 1.22972 1.23611 0.86527 0.78518 0.80086 0.82467 1.20679 1.19939 1.21297 1.62498 1.59723 1.02724 1.00748 1.22260 0.97910 0.89978 1.01297 1.20684 0.96999 0.97265 0.85621 1.25033 0.80428 0.98718 0.99965 1.74250 1.21640 1.12045 1.01806 1.74664 0.95751 1.22041 1.21360 1.21318 0.90966 0.95484 0.88011 1.43552 1.12642 1.32920 1.22566 1.17828 0.86552 0.92341 0.95495 1.21425 1.02888 0.95699 0.94177 1.21452 0.91816 0.95554 0.98392 1.21315 0.97907 1.00201 0.95708 1.21015 0.97622 0.91858 0.94714 1.19443 0.94557 1.04511 0.98749 1.18085 0.82762 0.78903 0.84148 1.90831 1.23762 1.65825 1.57579 1.44252 1.08304 1.42456 1.28833 1.22006 1.04595 0.94509 0.84918 0.89039 0.94611 0.97170 0.92869 0.90502 0.93790 0.95351 0.88953 0.90577 0.82125 0.83660 0.84204 0.83554 0.87961 0.90226 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.83 8.28 37.16 0.31 -3.53 16 2 C 0.21 4.71 2.34 -68.87 -0.16 4.55 16 3 H 0.04 0.95 8.03 -51.92 -0.42 0.53 16 4 C -0.50 -12.50 7.94 -34.44 -0.27 -12.77 16 5 H 0.06 1.61 6.75 -52.48 -0.35 1.26 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -23.39 11.32 55.43 0.63 -22.77 16 8 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.53 -10.22 4.46 -237.73 -1.06 -11.28 16 13 C 0.03 0.65 8.72 60.06 0.52 1.18 16 14 C 0.12 2.06 3.89 -4.98 -0.02 2.04 16 15 C 0.22 3.80 6.58 -154.08 -1.01 2.78 16 16 N -0.26 -4.68 11.76 32.98 0.39 -4.29 16 17 N -0.29 -5.04 12.14 30.29 0.37 -4.67 16 18 C 0.40 6.31 8.32 -319.07 -2.65 3.66 16 19 N -0.43 -6.86 3.01 -58.27 -0.18 -7.04 16 20 C 0.17 2.54 6.65 -83.67 -0.56 1.98 16 21 C -0.12 -1.65 9.46 -39.49 -0.37 -2.02 16 22 C -0.05 -0.57 10.02 -39.51 -0.40 -0.97 16 23 C -0.13 -1.22 10.03 -39.57 -0.40 -1.62 16 24 C -0.03 -0.35 9.64 -39.29 -0.38 -0.73 16 25 C -0.17 -2.25 5.88 -104.91 -0.62 -2.86 16 26 C 0.57 8.07 7.65 -12.45 -0.10 7.97 16 27 O -0.51 -7.54 15.85 5.25 0.08 -7.45 16 28 N -0.51 -7.06 3.06 -125.29 -0.38 -7.44 16 29 C 0.08 0.83 10.54 59.85 0.63 1.46 16 30 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 31 H 0.03 0.77 6.39 -51.93 -0.33 0.44 16 32 H 0.01 0.18 6.75 -51.93 -0.35 -0.17 16 33 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.08 1.57 6.53 -51.93 -0.34 1.23 16 35 H 0.04 0.83 6.84 -51.93 -0.36 0.47 16 36 H 0.03 0.54 6.28 -51.93 -0.33 0.21 16 37 H 0.09 1.38 5.79 -51.92 -0.30 1.08 16 38 H 0.08 1.25 6.94 -51.93 -0.36 0.89 16 39 H 0.16 2.36 4.40 -52.49 -0.23 2.13 16 40 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.15 1.34 7.76 -52.48 -0.41 0.93 16 43 H 0.10 0.96 6.88 -51.93 -0.36 0.61 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -29.19 359.80 -10.59 -39.78 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.27 Total: 1.97 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -5.57 Total: 2.61 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.24 Total: -57.49 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.08 Total: -7.45 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.19 -10.59 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129569549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.766 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds