Wall clock time and date at job start Wed Apr 1 2020 00:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46826 * 2 1 4 4 C 1.50699 * 109.47000 * 240.00288 * 2 1 3 5 5 H 1.08006 * 119.99728 * 239.99535 * 4 2 1 6 6 C 1.37876 * 120.00179 * 60.00299 * 4 2 1 7 7 N 1.31512 * 119.99937 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00031 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46797 * 269.99700 * 8 6 4 10 10 H 1.48503 * 109.46995 * 29.99507 * 8 6 4 11 11 H 1.48499 * 109.47215 * 149.99456 * 8 6 4 12 12 N 1.46896 * 109.47105 * 119.99894 * 2 1 3 13 13 C 1.46897 * 110.99788 * 58.95966 * 12 2 1 14 14 C 1.46896 * 111.00293 * 295.00258 * 12 2 1 15 15 C 1.50700 * 109.47164 * 190.00288 * 14 12 2 16 16 N 1.30445 * 126.42299 * 262.54643 * 15 14 12 17 17 N 1.28527 * 110.10527 * 179.85697 * 16 15 14 18 18 C 1.31483 * 109.89923 * 0.42005 * 17 16 15 19 19 N 1.36463 * 106.77848 * 359.74832 * 18 17 16 20 20 C 1.38908 * 120.92541 * 179.97438 * 19 18 17 21 21 C 1.38669 * 121.31439 * 180.02562 * 20 19 18 22 22 C 1.38064 * 119.87603 * 179.97438 * 21 20 19 23 23 C 1.38615 * 120.59730 * 0.02562 * 22 21 20 24 24 C 1.37886 * 120.34419 * 0.02703 * 23 22 21 25 25 C 1.39362 * 119.61210 * 359.97223 * 24 23 22 26 26 C 1.47417 * 121.32618 * 180.02562 * 25 24 23 27 27 O 1.21632 * 120.57829 * 359.97438 * 26 25 24 28 28 N 1.34932 * 118.85099 * 179.97438 * 26 25 24 29 29 C 1.46500 * 119.51347 * 179.97438 * 28 26 25 30 30 H 1.09000 * 109.47499 * 60.00127 * 1 2 3 31 31 H 1.09007 * 109.47012 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47603 * 299.99996 * 1 2 3 33 33 H 0.97001 * 119.99975 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47748 * 59.99867 * 13 12 2 35 35 H 1.08998 * 109.47312 * 180.02562 * 13 12 2 36 36 H 1.09004 * 109.47309 * 299.99463 * 13 12 2 37 37 H 1.09008 * 109.46979 * 310.00243 * 14 12 2 38 38 H 1.08997 * 109.47332 * 69.99603 * 14 12 2 39 39 H 1.07998 * 120.06095 * 359.97438 * 21 20 19 40 40 H 1.07997 * 119.70020 * 180.02562 * 22 21 20 41 41 H 1.07995 * 119.82545 * 179.97438 * 23 22 21 42 42 H 1.08008 * 120.19416 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.46995 * 0.02562 * 29 28 26 44 44 H 1.09000 * 109.46954 * 120.00079 * 29 28 26 45 45 H 1.08993 * 109.47612 * 240.00581 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.6297 -0.5457 -4.4124 10 1 2.4858 -2.5661 -3.7120 11 1 1.3431 -0.9491 -5.1121 12 7 2.0196 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6487 0.0391 2.4180 15 6 2.3679 -0.5571 3.6005 16 7 1.8844 -1.4284 4.4423 17 7 2.7677 -1.7244 5.3279 18 6 3.8712 -1.0456 5.1037 19 7 3.6458 -0.2823 3.9951 20 6 4.6315 0.5590 3.4951 21 6 4.4110 1.3385 2.3697 22 6 5.4118 2.1648 1.8985 23 6 6.6390 2.2234 2.5404 24 6 6.8768 1.4548 3.6602 25 6 5.8748 0.6167 4.1457 26 6 6.0880 -0.2207 5.3400 27 8 7.1512 -0.1974 5.9303 28 7 5.0832 -1.0136 5.7671 29 6 5.2795 -1.8523 6.9521 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7082 1.1610 -3.4844 34 1 1.8763 -2.6150 0.3646 35 1 1.9053 -2.5655 2.1438 36 1 0.4385 -2.0743 1.2639 37 1 1.9296 1.0870 2.3124 38 1 0.5722 -0.0345 2.5725 39 1 3.4583 1.2993 1.8626 40 1 5.2368 2.7709 1.0220 41 1 7.4131 2.8738 2.1609 42 1 7.8341 1.5021 4.1582 43 1 6.2853 -1.6991 7.3431 44 1 4.5487 -1.5814 7.7140 45 1 5.1505 -2.9001 6.6812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129569549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:01 Heat of formation + Delta-G solvation = 100.107904 kcal Electronic energy + Delta-G solvation = -30478.080477 eV Core-core repulsion = 26497.801888 eV Total energy + Delta-G solvation = -3980.278589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.89258 -41.81189 -39.98727 -39.08737 -37.61918 -36.12821 -34.87033 -32.91397 -32.13260 -31.15283 -30.28207 -28.80870 -28.70945 -27.18481 -25.94499 -25.05584 -24.61346 -24.13583 -22.02333 -21.21533 -20.74360 -20.13578 -18.49876 -18.42860 -18.22104 -17.69645 -17.17910 -16.83838 -16.48760 -16.05248 -15.95569 -15.68746 -15.59971 -15.40790 -14.86603 -14.83636 -14.42059 -14.34282 -14.01626 -13.62878 -13.46838 -13.27268 -13.01330 -12.92259 -12.86214 -12.65611 -12.63850 -12.56234 -12.43125 -12.30785 -12.09432 -11.99035 -11.91542 -11.78185 -11.43410 -10.90744 -10.44870 -10.35388 -9.84317 -9.61517 -9.04042 -8.07877 -6.16608 -0.68338 -0.31694 0.51821 0.62573 1.18282 1.25312 1.44281 1.47865 1.55430 1.62935 2.45345 2.58636 2.70584 2.83159 3.13156 3.22852 3.32679 3.54980 3.59242 3.78786 4.07638 4.12989 4.19184 4.21296 4.34533 4.36633 4.41467 4.49099 4.53065 4.67076 4.73595 4.78197 4.83687 4.84754 4.95518 4.97632 5.11036 5.14490 5.16561 5.27599 5.31927 5.52476 5.58653 5.72592 5.75967 5.81630 6.10975 6.31732 6.39626 6.59661 6.93327 7.25893 7.51865 8.97617 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.003783 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.579102 B = 7400.674993 C = 8575.528625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.222 3.778 3 H 0.030 0.970 4 C -0.511 4.511 5 H 0.052 0.948 6 C 0.023 3.977 7 N -0.913 5.913 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.287 1.287 12 N -0.533 5.533 13 C 0.044 3.956 14 C 0.131 3.869 15 C 0.219 3.781 16 N -0.279 5.279 17 N -0.309 5.309 18 C 0.398 3.602 19 N -0.428 5.428 20 C 0.147 3.853 21 C -0.137 4.137 22 C -0.050 4.050 23 C -0.112 4.112 24 C -0.029 4.029 25 C -0.182 4.182 26 C 0.568 3.432 27 O -0.516 6.516 28 N -0.510 5.510 29 C 0.076 3.924 30 H 0.066 0.934 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.261 0.739 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.029 0.971 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.145 0.855 40 H 0.166 0.834 41 H 0.182 0.818 42 H 0.166 0.834 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.295 4.115 12.880 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.116 3.884 3 H 0.048 0.952 4 C -0.550 4.550 5 H 0.070 0.930 6 C -0.176 4.176 7 N -0.552 5.552 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.213 1.213 12 N -0.258 5.258 13 C -0.104 4.104 14 C 0.001 3.999 15 C -0.048 4.048 16 N -0.116 5.116 17 N -0.156 5.156 18 C 0.044 3.956 19 N -0.118 5.118 20 C 0.052 3.948 21 C -0.156 4.156 22 C -0.069 4.069 23 C -0.130 4.130 24 C -0.048 4.048 25 C -0.187 4.187 26 C 0.360 3.640 27 O -0.391 6.391 28 N -0.240 5.240 29 C -0.064 4.064 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.162 0.838 40 H 0.184 0.816 41 H 0.199 0.801 42 H 0.183 0.817 43 H 0.131 0.869 44 H 0.109 0.891 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.319 3.201 13.776 17.508 hybrid contribution -0.269 0.023 -1.425 1.451 sum 10.050 3.224 12.351 16.247 Atomic orbital electron populations 1.22282 1.00114 0.99465 1.00658 1.19120 0.90151 0.93553 0.85620 0.95242 1.21254 1.30629 1.12388 0.90710 0.93008 1.25456 0.95351 0.95686 1.01111 1.69962 1.37456 1.23867 1.23964 0.85722 0.78094 0.78972 0.79778 1.20198 1.20152 1.21273 1.62331 1.59805 1.02638 1.00999 1.22120 0.97799 0.89945 1.00551 1.20648 0.97155 0.97728 0.84319 1.24878 0.81038 0.98922 0.99978 1.74177 1.22422 1.12655 1.02381 1.74580 0.96257 1.22968 1.21768 1.21457 0.91277 0.94930 0.87977 1.43608 1.12630 1.33034 1.22493 1.18055 0.86807 0.93316 0.96634 1.21420 1.03208 0.96792 0.94213 1.21777 0.91661 0.94681 0.98794 1.21752 0.97935 0.99123 0.94155 1.21365 0.97565 0.90907 0.94954 1.19643 0.94892 1.05380 0.98776 1.18267 0.82588 0.78874 0.84321 1.90818 1.23957 1.66310 1.58044 1.44488 1.07485 1.42704 1.29316 1.22236 1.05551 0.94477 0.84148 0.91554 0.95126 0.94868 0.92948 0.92102 0.93523 0.95278 0.87444 0.90307 0.83757 0.81643 0.80104 0.81693 0.86948 0.89085 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.19 8.28 71.98 0.60 -6.60 16 2 C 0.22 9.80 2.34 44.17 0.10 9.91 16 3 H 0.03 1.38 8.03 -2.38 -0.02 1.36 16 4 C -0.51 -25.58 7.94 25.60 0.20 -25.37 16 5 H 0.05 2.67 6.75 -2.91 -0.02 2.65 16 6 C 0.02 1.19 5.30 84.65 0.45 1.63 16 7 N -0.91 -47.89 11.32 21.45 0.24 -47.65 16 8 Si 0.95 41.21 29.54 68.60 2.03 43.23 16 9 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.53 -20.51 4.46 -906.06 -4.04 -24.55 16 13 C 0.04 1.72 8.72 127.69 1.11 2.83 16 14 C 0.13 4.33 3.89 85.56 0.33 4.66 16 15 C 0.22 7.41 6.58 137.66 0.91 8.31 16 16 N -0.28 -10.08 11.76 -49.58 -0.58 -10.67 16 17 N -0.31 -10.71 12.14 -58.09 -0.71 -11.41 16 18 C 0.40 12.64 8.32 260.18 2.16 14.81 16 19 N -0.43 -13.73 3.01 -338.27 -1.02 -14.75 16 20 C 0.15 4.19 6.65 38.66 0.26 4.45 16 21 C -0.14 -3.54 9.46 22.33 0.21 -3.33 16 22 C -0.05 -0.95 10.02 22.32 0.22 -0.72 16 23 C -0.11 -1.62 10.03 22.28 0.22 -1.40 16 24 C -0.03 -0.53 9.64 22.46 0.22 -0.32 16 25 C -0.18 -4.63 5.88 -20.05 -0.12 -4.75 16 26 C 0.57 15.47 7.65 86.64 0.66 16.13 16 27 O -0.52 -14.62 15.85 -4.13 -0.07 -14.69 16 28 N -0.51 -13.84 3.06 -668.47 -2.04 -15.88 16 29 C 0.08 1.49 10.54 127.77 1.35 2.84 16 30 H 0.07 3.24 6.07 -2.39 -0.01 3.23 16 31 H 0.03 1.32 6.39 -2.38 -0.02 1.30 16 32 H 0.03 1.24 6.75 -2.39 -0.02 1.23 16 33 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 34 H 0.06 2.53 6.53 -2.39 -0.02 2.51 16 35 H 0.05 1.77 6.84 -2.39 -0.02 1.75 16 36 H 0.03 1.11 6.28 -2.39 -0.01 1.09 16 37 H 0.11 3.19 5.79 -2.38 -0.01 3.18 16 38 H 0.08 2.55 6.94 -2.39 -0.02 2.53 16 39 H 0.14 4.20 4.40 -2.91 -0.01 4.18 16 40 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 42 H 0.17 2.44 7.76 -2.91 -0.02 2.42 16 43 H 0.11 1.98 6.88 -2.39 -0.02 1.97 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -62.55 359.80 3.76 -58.80 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 1.05 Total: 14.49 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 8.89 Total: 23.08 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -8.15 Total: -124.91 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.07 Total: -14.69 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -62.55 3.76 -58.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129569549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.905 kcal (2) G-P(sol) polarization free energy of solvation -62.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds